Wall clock time and date at job start Tue Mar 31 2020 05:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30847 * 1 3 3 Si 1.86794 * 120.00402 * 2 1 4 4 H 1.48499 * 109.47204 * 240.00229 * 3 2 1 5 5 H 1.48507 * 109.47081 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47376 * 119.99892 * 3 2 1 7 7 C 1.39969 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99553 * 175.65359 * 7 2 1 9 9 C 1.41070 * 119.99812 * 355.65576 * 7 2 1 10 10 C 1.40734 * 120.30153 * 34.94753 * 9 7 2 11 11 C 1.36467 * 119.94143 * 180.27283 * 10 9 7 12 12 C 1.38856 * 120.57835 * 359.74641 * 11 10 9 13 13 C 1.38225 * 120.61843 * 359.97327 * 12 11 10 14 14 C 1.38647 * 120.02931 * 0.02562 * 13 12 11 15 15 N 1.39127 * 120.28212 * 179.97438 * 14 13 12 16 16 C 1.34776 * 119.99932 * 34.55243 * 15 14 13 17 17 O 1.21282 * 120.00063 * 355.80744 * 16 15 14 18 18 C 1.50697 * 119.99725 * 176.08649 * 16 15 14 19 19 H 1.09003 * 115.55240 * 34.05211 * 18 16 15 20 20 C 1.53001 * 117.49897 * 248.34457 * 18 16 15 21 21 C 1.53002 * 60.00120 * 252.51220 * 20 18 16 22 22 H 1.09001 * 117.49820 * 252.51045 * 21 20 18 23 23 C 1.52999 * 117.52227 * 107.47816 * 21 20 18 24 24 F 1.39887 * 109.47308 * 231.37325 * 23 21 20 25 25 F 1.39899 * 109.46676 * 351.37528 * 23 21 20 26 26 H 0.97003 * 120.00092 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.03060 * 0.02562 * 10 9 7 28 28 H 1.08006 * 119.70945 * 179.72127 * 11 10 9 29 29 H 1.08004 * 119.69730 * 180.02562 * 12 11 10 30 30 H 1.07993 * 119.98918 * 179.97438 * 13 12 11 31 31 H 0.97003 * 119.99742 * 214.54708 * 15 14 13 32 32 H 1.09001 * 117.50068 * 359.97438 * 20 18 16 33 33 H 1.08993 * 117.50242 * 145.02162 * 20 18 16 34 34 H 1.09000 * 109.47135 * 111.36690 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 3.0963 1.6963 -1.2125 5 1 1.2776 2.7464 -0.0006 6 1 3.0963 1.6963 1.2125 7 6 2.0083 -1.2122 -0.0005 8 1 3.0859 -1.2135 -0.0714 9 6 1.3059 -2.4321 0.0915 10 6 0.0454 -2.5735 -0.5183 11 6 -0.6301 -3.7551 -0.4200 12 6 -0.0827 -4.8261 0.2739 13 6 1.1561 -4.7151 0.8768 14 6 1.8646 -3.5262 0.7929 15 7 3.1117 -3.4085 1.3982 16 6 3.9400 -4.4705 1.4471 17 8 3.5695 -5.5481 1.0319 18 6 5.3243 -4.3204 2.0233 19 1 5.4162 -3.6136 2.8481 20 6 6.5073 -4.4407 1.0604 21 6 6.2144 -5.5645 2.0566 22 1 6.8921 -5.6760 2.9030 23 6 5.6306 -6.8658 1.5028 24 9 4.4864 -7.2103 2.2302 25 9 5.2921 -6.6893 0.1569 26 1 -0.4850 0.8401 0.0004 27 1 -0.3887 -1.7463 -1.0603 28 1 -1.5992 -3.8581 -0.8856 29 1 -0.6296 -5.7550 0.3424 30 1 1.5721 -5.5543 1.4143 31 1 3.3850 -2.5619 1.7851 32 1 6.2842 -4.6288 0.0102 33 1 7.3776 -3.8130 1.2514 34 1 6.3701 -7.6618 1.5900 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344335933.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:55 Heat of formation + Delta-G solvation = -86.322209 kcal Electronic energy + Delta-G solvation = -22118.081517 eV Core-core repulsion = 18459.343302 eV Total energy + Delta-G solvation = -3658.738215 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.36060 -46.34675 -39.71835 -37.62563 -36.02468 -33.66284 -33.57365 -29.55620 -28.66169 -27.15924 -25.32586 -23.97929 -21.52280 -21.10749 -20.30558 -19.20791 -17.86948 -17.28100 -16.70134 -16.54554 -16.04716 -15.40760 -15.06845 -14.84722 -14.17367 -14.02510 -13.53106 -13.17655 -12.96708 -12.69233 -12.53090 -12.29483 -12.00814 -11.88468 -11.72407 -11.20107 -11.15839 -11.03881 -10.88052 -10.73048 -10.45258 -10.32428 -10.01260 -9.73798 -9.24991 -9.10680 -8.73367 -7.25768 -6.90558 -6.58578 -4.41349 2.58818 2.87703 3.04696 3.06053 3.20791 3.22493 3.56371 3.92119 3.96404 4.03876 4.45992 4.54358 4.67935 4.72452 4.92187 5.35723 5.46405 5.50721 5.59225 5.65281 5.76000 5.96788 6.37530 6.57938 6.63366 7.00974 7.12131 7.24847 7.34230 7.72020 7.77889 8.04249 8.13965 8.17683 8.47556 8.61944 8.87382 8.90296 9.10272 10.26019 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.019708 B = 0.005867 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.410905 B = 4771.393643 C = 5901.254640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.470 4.470 8 H 0.074 0.926 9 C 0.095 3.905 10 C -0.140 4.140 11 C -0.121 4.121 12 C -0.215 4.215 13 C -0.093 4.093 14 C 0.027 3.973 15 N -0.633 5.633 16 C 0.517 3.483 17 O -0.515 6.515 18 C -0.166 4.166 19 H 0.128 0.872 20 C -0.131 4.131 21 C -0.200 4.200 22 H 0.133 0.867 23 C 0.309 3.691 24 F -0.192 7.192 25 F -0.193 7.193 26 H 0.278 0.722 27 H 0.130 0.870 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.402 0.598 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.899 -4.722 4.394 13.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.142 4.142 3 Si 0.738 3.262 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.501 4.501 8 H 0.092 0.908 9 C 0.091 3.909 10 C -0.160 4.160 11 C -0.140 4.140 12 C -0.235 4.235 13 C -0.113 4.113 14 C -0.067 4.067 15 N -0.275 5.275 16 C 0.303 3.697 17 O -0.391 6.391 18 C -0.188 4.188 19 H 0.146 0.854 20 C -0.169 4.169 21 C -0.219 4.219 22 H 0.151 0.849 23 C 0.255 3.745 24 F -0.174 7.174 25 F -0.174 7.174 26 H 0.089 0.911 27 H 0.148 0.852 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.129 0.871 31 H 0.237 0.763 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.418 -5.317 4.081 13.240 hybrid contribution 0.367 1.344 0.330 1.431 sum 11.784 -3.973 4.411 13.195 Atomic orbital electron populations 1.69759 1.07255 1.28810 1.37779 1.25844 0.94888 1.00965 0.92529 0.86296 0.79836 0.80405 0.79663 1.19124 1.20413 1.19169 1.19249 0.94458 0.90017 1.46419 0.90836 1.17462 0.93201 0.91353 0.88868 1.21166 0.96520 0.96409 1.01879 1.20539 0.98513 0.94381 1.00525 1.20380 0.97337 0.98232 1.07562 1.20686 0.93806 0.96536 1.00252 1.17830 0.87098 0.97676 1.04084 1.42721 1.15410 1.13224 1.56158 1.19468 0.85163 0.84987 0.80125 1.90755 1.75644 1.25672 1.47035 1.22287 0.91566 1.01243 1.03685 0.85421 1.23074 0.97736 0.98669 0.97391 1.23526 1.03875 0.90255 1.04255 0.84891 1.20727 0.84034 0.95240 0.74489 1.93009 1.54005 1.92998 1.77348 1.92997 1.93577 1.96339 1.34459 0.91053 0.85225 0.89369 0.89217 0.87068 0.76250 0.86948 0.87095 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.55 10.62 55.55 0.59 -19.96 16 2 C 0.07 1.79 5.42 -17.32 -0.09 1.69 16 3 Si 0.91 18.20 29.56 -169.99 -5.03 13.18 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 7 C -0.47 -11.92 8.22 -37.86 -0.31 -12.23 16 8 H 0.07 1.77 7.63 -52.49 -0.40 1.37 16 9 C 0.09 2.49 5.56 -106.65 -0.59 1.90 16 10 C -0.14 -3.67 8.61 -39.28 -0.34 -4.01 16 11 C -0.12 -2.94 9.96 -39.99 -0.40 -3.34 16 12 C -0.22 -5.18 10.04 -39.36 -0.39 -5.58 16 13 C -0.09 -2.31 8.69 -39.43 -0.34 -2.65 16 14 C 0.03 0.66 6.34 -83.17 -0.53 0.13 16 15 N -0.63 -13.17 4.96 -9.48 -0.05 -13.22 16 16 C 0.52 9.96 7.28 -10.99 -0.08 9.88 16 17 O -0.51 -11.46 8.32 5.56 0.05 -11.42 16 18 C -0.17 -2.27 6.18 -91.77 -0.57 -2.84 16 19 H 0.13 1.40 8.14 -51.93 -0.42 0.97 16 20 C -0.13 -1.49 9.63 -26.73 -0.26 -1.74 16 21 C -0.20 -2.26 6.16 -90.62 -0.56 -2.82 16 22 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 23 C 0.31 4.23 5.12 37.16 0.19 4.42 16 24 F -0.19 -3.35 14.93 2.25 0.03 -3.32 16 25 F -0.19 -3.35 13.55 2.25 0.03 -3.32 16 26 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 27 H 0.13 3.50 6.16 -52.49 -0.32 3.17 16 28 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 29 H 0.09 1.94 8.06 -52.48 -0.42 1.52 16 30 H 0.11 2.77 6.20 -52.49 -0.33 2.45 16 31 H 0.40 7.51 8.10 -40.82 -0.33 7.18 16 32 H 0.11 1.50 7.22 -51.93 -0.37 1.12 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 292.76 15.07 4.41 4.41 Total: -1.00 -30.89 292.76 -7.66 -38.55 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -3.42 Total: 12.28 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -4.27 Total: -17.18 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.54 Total: -33.19 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.05 Total: -11.42 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 0.06 Total: -6.64 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.89 -7.66 -38.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344335933.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.773 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds