Wall clock time and date at job start Tue Mar 31 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 C 1.53005 * 109.47160 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46927 * 180.02562 * 16 15 13 18 18 C 1.53005 * 109.46927 * 179.97438 * 17 16 15 19 19 F 1.39902 * 109.47117 * 59.99720 * 18 17 16 20 20 F 1.39905 * 109.46900 * 179.97438 * 18 17 16 21 21 F 1.39897 * 109.46733 * 299.99424 * 18 17 16 22 22 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 25 25 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 26 26 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 27 27 H 1.08994 * 109.47139 * 299.99683 * 15 13 12 28 28 H 1.09001 * 109.47137 * 59.99892 * 15 13 12 29 29 H 1.09008 * 109.46756 * 299.99545 * 16 15 13 30 30 H 1.09001 * 109.47279 * 59.99862 * 16 15 13 31 31 H 1.09008 * 109.46834 * 299.99255 * 17 16 15 32 32 H 1.09001 * 109.47451 * 59.99726 * 17 16 15 33 33 H 1.09001 * 113.77016 * 221.05654 * 22 12 11 34 34 H 1.09005 * 113.86980 * 89.67729 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 6 -0.3463 -7.2683 2.6658 17 6 -1.3953 -7.4831 3.7587 18 6 -1.5921 -8.9829 3.9890 19 9 -0.3797 -9.5566 4.3869 20 9 -2.5509 -9.1793 4.9887 21 9 -2.0252 -9.5839 2.8023 22 6 2.1615 -3.7405 -0.0011 23 1 -0.4850 0.8401 0.0004 24 1 -0.3764 -1.7802 -0.9678 25 1 1.3966 -2.5373 2.2104 26 1 -0.2731 -2.8605 1.5670 27 1 0.1879 -5.3004 3.3596 28 1 -1.0946 -5.3215 2.1255 29 1 -0.6840 -7.7370 1.7414 30 1 0.5985 -7.7151 2.9756 31 1 -1.0579 -7.0144 4.6833 32 1 -2.3399 -7.0365 3.4485 33 1 2.1758 -4.2745 -0.9513 34 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356578693.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:19 Heat of formation + Delta-G solvation = -222.879539 kcal Electronic energy + Delta-G solvation = -21984.583639 eV Core-core repulsion = 17889.154629 eV Total energy + Delta-G solvation = -4095.429010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.103 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.22520 -47.73927 -47.68685 -39.58643 -37.60024 -34.92836 -33.98089 -32.24235 -30.14808 -28.27379 -25.62088 -25.30139 -23.97104 -21.80251 -20.03339 -18.68604 -18.51540 -18.28711 -17.64133 -17.23598 -16.20570 -15.84483 -15.42903 -14.87906 -14.72908 -14.63183 -14.24242 -14.15206 -14.05972 -13.85990 -13.84535 -13.26014 -12.97100 -12.62342 -12.53397 -12.26706 -11.84695 -11.78512 -11.58689 -11.49607 -11.11160 -11.06643 -10.92174 -10.57138 -10.33324 -9.68126 -9.24278 -8.80284 -8.46427 -7.88501 -6.43681 -4.53981 2.62227 3.13278 3.14979 3.19490 3.21945 3.43291 3.70628 3.90764 3.91086 4.15199 4.66838 4.77229 4.81174 4.98814 5.19676 5.26693 5.28502 5.55425 5.64194 5.91240 5.94277 6.09631 6.16916 6.33711 6.46164 6.57993 6.63165 7.05512 7.59017 7.77903 8.44908 8.48998 8.70300 9.17384 9.41581 10.62943 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.037966 B = 0.003183 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.323945 B = 8793.977909 C = 9025.408657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.284 1.284 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.239 3.761 10 O -0.573 6.573 11 C 0.076 3.924 12 N -0.632 5.632 13 C 0.526 3.474 14 O -0.566 6.566 15 C -0.130 4.130 16 C -0.108 4.108 17 C -0.167 4.167 18 C 0.452 3.548 19 F -0.184 7.184 20 F -0.189 7.189 21 F -0.183 7.183 22 C 0.110 3.890 23 H 0.274 0.726 24 H 0.392 0.608 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.129 -9.154 9.032 13.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.089 0.911 9 C 0.197 3.803 10 O -0.386 6.386 11 C -0.047 4.047 12 N -0.366 5.366 13 C 0.316 3.684 14 O -0.446 6.446 15 C -0.170 4.170 16 C -0.146 4.146 17 C -0.205 4.205 18 C 0.398 3.602 19 F -0.165 7.165 20 F -0.170 7.170 21 F -0.164 7.164 22 C -0.011 4.011 23 H 0.084 0.916 24 H 0.248 0.752 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.088 0.912 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.805 -10.307 8.665 13.993 hybrid contribution 0.016 1.234 0.392 1.295 sum -3.789 -9.073 9.057 13.368 Atomic orbital electron populations 1.69305 1.06193 1.28309 1.50130 1.25064 0.95021 0.99876 0.93006 0.86380 0.79504 0.81584 0.79007 1.20989 1.19892 1.19842 1.21488 0.93931 0.90021 1.52195 0.91097 1.19836 0.85460 0.91195 0.83825 1.86062 1.45195 1.50509 1.56785 1.24330 0.99969 0.77747 1.02618 1.50189 1.41899 1.04715 1.39781 1.20090 0.83349 0.81658 0.83328 1.90648 1.56635 1.40222 1.57114 1.21479 0.99867 0.96721 0.98958 1.21329 0.98594 0.96561 0.98092 1.22940 1.04565 0.88888 1.04110 1.20634 0.73598 0.92250 0.73715 1.93188 1.45271 1.87200 1.90866 1.93180 1.65084 1.96339 1.62397 1.93192 1.89829 1.86139 1.47277 1.23457 0.93796 0.92544 0.91349 0.91570 0.75184 0.89980 0.91338 0.88995 0.88765 0.89773 0.89876 0.87176 0.87095 0.91168 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.04 11.09 55.43 0.61 -21.42 16 2 C 0.07 1.76 5.40 -17.82 -0.10 1.66 16 3 Si 0.91 18.93 29.54 -169.99 -5.02 13.91 16 4 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.54 -13.11 8.62 -34.44 -0.30 -13.41 16 8 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.24 5.53 1.44 -90.84 -0.13 5.40 16 10 O -0.57 -14.34 13.48 -35.23 -0.48 -14.82 16 11 C 0.08 1.54 8.01 -2.97 -0.02 1.51 16 12 N -0.63 -12.75 3.61 -178.30 -0.64 -13.39 16 13 C 0.53 9.98 8.06 -10.99 -0.09 9.89 16 14 O -0.57 -12.45 16.71 5.55 0.09 -12.36 16 15 C -0.13 -1.73 5.45 -27.88 -0.15 -1.89 16 16 C -0.11 -1.28 4.26 -26.73 -0.11 -1.40 16 17 C -0.17 -1.45 5.26 -26.73 -0.14 -1.59 16 18 C 0.45 4.68 3.16 37.16 0.12 4.80 16 19 F -0.18 -2.12 16.80 2.25 0.04 -2.08 16 20 F -0.19 -1.96 17.32 2.25 0.04 -1.93 16 21 F -0.18 -2.15 16.80 2.25 0.04 -2.12 16 22 C 0.11 2.35 8.22 -2.97 -0.02 2.33 16 23 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 24 H 0.39 9.88 6.46 45.56 0.29 10.18 16 25 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 26 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.12 7.76 -51.92 -0.40 0.71 16 30 H 0.08 1.07 7.76 -51.93 -0.40 0.66 16 31 H 0.11 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.09 1.66 8.09 -51.93 -0.42 1.24 16 LS Contribution 307.66 15.07 4.64 4.64 Total: -1.00 -27.91 307.66 -5.06 -32.97 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -3.43 Total: 9.29 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -0.95 Total: 7.31 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: -0.03 Total: -34.81 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.38 Total: -27.18 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 0.11 Total: -6.13 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.91 -5.06 -32.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356578693.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.910 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds