Wall clock time and date at job start Tue Mar 31 2020 06:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42904 * 112.94794 * 48.40868 * 9 7 2 11 11 C 1.53953 * 113.74304 * 276.67772 * 9 7 2 12 12 N 1.47582 * 86.11558 * 222.04955 * 11 9 7 13 13 C 1.34773 * 134.48982 * 204.63927 * 12 11 9 14 14 O 1.21284 * 119.99947 * 179.97438 * 13 12 11 15 15 C 1.50696 * 120.00197 * 359.97438 * 13 12 11 16 16 C 1.53005 * 109.47160 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46927 * 180.02562 * 16 15 13 18 18 C 1.53005 * 109.46927 * 179.97438 * 17 16 15 19 19 F 1.39902 * 109.47117 * 59.99720 * 18 17 16 20 20 F 1.39905 * 109.46900 * 179.97438 * 18 17 16 21 21 F 1.39897 * 109.46733 * 299.99424 * 18 17 16 22 22 C 1.47581 * 91.01664 * 24.63711 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96699 * 113.99284 * 309.66953 * 10 9 7 25 25 H 1.09002 * 113.76657 * 336.34627 * 11 9 7 26 26 H 1.08991 * 113.76978 * 107.74459 * 11 9 7 27 27 H 1.08994 * 109.47139 * 299.99683 * 15 13 12 28 28 H 1.09001 * 109.47137 * 59.99892 * 15 13 12 29 29 H 1.09008 * 109.46756 * 299.99545 * 16 15 13 30 30 H 1.09001 * 109.47279 * 59.99862 * 16 15 13 31 31 H 1.09008 * 109.46834 * 299.99255 * 17 16 15 32 32 H 1.09001 * 109.47451 * 59.99726 * 17 16 15 33 33 H 1.09001 * 113.77016 * 221.05654 * 22 12 11 34 34 H 1.09005 * 113.86980 * 89.67729 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2156 -2.5447 -0.9843 11 6 0.7997 -2.9543 1.3992 12 7 1.2211 -4.3068 0.9853 13 6 0.8828 -5.5570 1.3583 14 8 1.4096 -6.5117 0.8272 15 6 -0.1499 -5.7686 2.4351 16 6 -0.3463 -7.2683 2.6658 17 6 -1.3953 -7.4831 3.7587 18 6 -1.5921 -8.9829 3.9890 19 9 -0.3797 -9.5566 4.3869 20 9 -2.5509 -9.1793 4.9887 21 9 -2.0252 -9.5839 2.8023 22 6 2.1615 -3.7405 -0.0011 23 1 -0.4850 0.8401 0.0004 24 1 -0.3764 -1.7802 -0.9678 25 1 1.3966 -2.5373 2.2104 26 1 -0.2731 -2.8605 1.5670 27 1 0.1879 -5.3004 3.3596 28 1 -1.0946 -5.3215 2.1255 29 1 -0.6840 -7.7370 1.7414 30 1 0.5985 -7.7151 2.9756 31 1 -1.0579 -7.0144 4.6833 32 1 -2.3399 -7.0365 3.4485 33 1 2.1758 -4.2745 -0.9513 34 1 3.1590 -3.5540 0.3970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356578693.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:18 Heat of formation + Delta-G solvation = -241.180886 kcal Electronic energy + Delta-G solvation = -21985.377245 eV Core-core repulsion = 17889.154629 eV Total energy + Delta-G solvation = -4096.222616 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.103 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.05992 -48.56372 -48.55259 -41.17707 -39.19653 -35.95447 -35.75596 -34.11120 -31.38014 -29.71153 -27.22443 -26.96560 -25.05683 -22.74574 -21.63274 -19.93066 -19.51823 -19.28969 -19.21948 -18.41219 -17.67203 -17.16958 -16.99266 -16.42684 -15.96275 -15.83537 -15.47303 -15.26579 -14.98530 -14.80806 -14.71661 -14.69750 -14.38549 -14.06574 -13.78655 -13.62635 -13.36992 -13.04459 -12.94717 -12.74913 -12.69105 -12.39917 -12.22942 -12.18598 -11.86057 -11.37965 -10.91498 -10.60925 -10.21786 -9.54246 -8.25159 -6.41733 1.49263 1.52088 1.58544 1.67829 1.79453 2.03813 2.42356 2.88366 2.97712 3.04990 3.13857 3.50528 3.80346 3.94419 4.04039 4.16391 4.24287 4.43619 4.49459 4.54447 4.62491 4.66661 4.85233 4.94723 4.98653 4.99873 5.19885 5.27833 5.74678 5.95453 6.63085 6.90646 7.17661 7.32159 7.49750 8.80414 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.037966 B = 0.003183 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.323945 B = 8793.977909 C = 9025.408657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.036 3.964 3 Si 0.966 3.034 4 H -0.282 1.282 5 H -0.267 1.267 6 H -0.278 1.278 7 C -0.559 4.559 8 H 0.070 0.930 9 C 0.216 3.784 10 O -0.588 6.588 11 C 0.094 3.906 12 N -0.636 5.636 13 C 0.516 3.484 14 O -0.602 6.602 15 C -0.120 4.120 16 C -0.104 4.104 17 C -0.155 4.155 18 C 0.450 3.550 19 F -0.193 7.193 20 F -0.187 7.187 21 F -0.195 7.195 22 C 0.107 3.893 23 H 0.276 0.724 24 H 0.388 0.612 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.054 0.946 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.583 -8.431 10.690 14.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.165 4.165 3 Si 0.792 3.208 4 H -0.208 1.208 5 H -0.192 1.192 6 H -0.203 1.203 7 C -0.597 4.597 8 H 0.088 0.912 9 C 0.175 3.825 10 O -0.400 6.400 11 C -0.028 4.028 12 N -0.369 5.369 13 C 0.308 3.692 14 O -0.486 6.486 15 C -0.159 4.159 16 C -0.142 4.142 17 C -0.193 4.193 18 C 0.396 3.604 19 F -0.175 7.175 20 F -0.169 7.169 21 F -0.176 7.176 22 C -0.016 4.016 23 H 0.086 0.914 24 H 0.244 0.756 25 H 0.113 0.887 26 H 0.093 0.907 27 H 0.140 0.860 28 H 0.130 0.870 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.072 0.928 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.265 -9.594 10.340 14.736 hybrid contribution 0.172 0.960 -0.178 0.992 sum -4.093 -8.633 10.162 13.948 Atomic orbital electron populations 1.69361 1.06997 1.28966 1.50212 1.25695 0.95752 1.02396 0.92651 0.85477 0.78319 0.78225 0.78817 1.20771 1.19170 1.20339 1.21722 0.94127 0.90971 1.52845 0.91188 1.20139 0.85598 0.91575 0.85182 1.86049 1.45657 1.50330 1.58014 1.24102 1.00471 0.77285 1.00980 1.50240 1.41723 1.05343 1.39570 1.21161 0.83715 0.80470 0.83845 1.90629 1.58144 1.41119 1.58662 1.21524 0.98558 0.97901 0.97929 1.21221 0.99096 0.95401 0.98454 1.22922 1.04576 0.87666 1.04124 1.20916 0.73206 0.93010 0.73291 1.93171 1.45870 1.87514 1.90926 1.93182 1.65014 1.96393 1.62304 1.93172 1.89934 1.86509 1.48007 1.23440 0.94689 0.92003 0.91466 0.91390 0.75650 0.88697 0.90667 0.86004 0.87027 0.91722 0.91131 0.84445 0.84891 0.92783 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.13 11.09 21.45 0.24 -43.89 16 2 C 0.04 1.70 5.40 84.66 0.46 2.15 16 3 Si 0.97 38.01 29.54 68.60 2.03 40.03 16 4 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 6 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 7 C -0.56 -26.92 8.62 25.60 0.22 -26.70 16 8 H 0.07 3.29 7.81 -2.91 -0.02 3.27 16 9 C 0.22 9.94 1.44 -10.88 -0.02 9.93 16 10 O -0.59 -29.63 13.48 -148.98 -2.01 -31.64 16 11 C 0.09 3.64 8.01 86.48 0.69 4.34 16 12 N -0.64 -24.98 3.61 -840.23 -3.03 -28.01 16 13 C 0.52 19.01 8.06 87.66 0.71 19.71 16 14 O -0.60 -26.59 16.71 -3.04 -0.05 -26.64 16 15 C -0.12 -2.86 5.45 29.85 0.16 -2.70 16 16 C -0.10 -2.27 4.26 30.60 0.13 -2.14 16 17 C -0.16 -2.21 5.26 30.60 0.16 -2.05 16 18 C 0.45 8.49 3.16 71.98 0.23 8.72 16 19 F -0.19 -4.23 16.80 44.97 0.76 -3.47 16 20 F -0.19 -3.51 17.32 44.97 0.78 -2.74 16 21 F -0.19 -4.40 16.80 44.97 0.76 -3.64 16 22 C 0.11 4.55 8.22 86.48 0.71 5.26 16 23 H 0.28 12.67 8.31 -92.71 -0.77 11.90 16 24 H 0.39 19.71 6.46 -74.06 -0.48 19.23 16 25 H 0.10 3.43 8.09 -2.39 -0.02 3.41 16 26 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.06 1.67 7.76 -2.38 -0.02 1.65 16 30 H 0.07 1.73 7.76 -2.39 -0.02 1.71 16 31 H 0.14 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.10 3.88 8.09 -2.38 -0.02 3.86 16 Total: -1.00 -59.70 307.66 3.57 -56.13 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.66 Total: 27.36 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: 3.45 Total: 16.52 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: -2.79 Total: -71.90 kcal Atomic # 8 Polarization: -56.23 SS G_CDS: -2.06 Total: -58.29 kcal Atomic # 9 Polarization: -12.14 SS G_CDS: 2.29 Total: -9.85 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.03 kcal Total: -59.70 3.57 -56.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356578693.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.052 kcal (2) G-P(sol) polarization free energy of solvation -59.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds