Wall clock time and date at job start Tue Mar 31 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99944 * 2 1 4 4 H 1.48494 * 109.46898 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47054 * 299.99803 * 3 2 1 6 6 H 1.48493 * 109.47262 * 59.99663 * 3 2 1 7 7 C 1.37874 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00460 * 181.05284 * 7 2 1 9 9 C 1.50702 * 119.99916 * 1.04605 * 7 2 1 10 10 C 1.53002 * 115.55082 * 325.11379 * 9 7 2 11 11 N 1.46504 * 109.46959 * 305.46939 * 10 9 7 12 12 C 1.34780 * 120.00096 * 184.70902 * 11 10 9 13 13 O 1.21585 * 119.99689 * 5.45339 * 12 11 10 14 14 C 1.47563 * 119.99944 * 185.45952 * 12 11 10 15 15 C 1.39736 * 120.14543 * 354.58514 * 14 12 11 16 16 C 1.37734 * 119.90753 * 180.28206 * 15 14 12 17 17 C 1.38756 * 120.18968 * 359.77003 * 16 15 14 18 18 F 1.35103 * 119.85426 * 179.97438 * 17 16 15 19 19 C 1.38496 * 120.28967 * 359.95206 * 17 16 15 20 20 C 1.38192 * 120.08894 * 0.02562 * 19 17 16 21 21 F 1.35102 * 120.09603 * 179.97438 * 20 19 17 22 22 C 1.52997 * 117.50019 * 110.77867 * 9 7 2 23 23 C 1.52996 * 117.50217 * 179.43903 * 9 7 2 24 24 H 0.97001 * 119.99840 * 5.01019 * 1 2 3 25 25 H 1.09002 * 109.47573 * 185.47249 * 10 9 7 26 26 H 1.09004 * 109.47505 * 65.46688 * 10 9 7 27 27 H 0.97002 * 120.00034 * 4.70529 * 11 10 9 28 28 H 1.08006 * 120.04277 * 0.02562 * 15 14 12 29 29 H 1.07998 * 119.90558 * 179.74231 * 16 15 14 30 30 H 1.07999 * 119.95564 * 180.02562 * 19 17 16 31 31 H 1.09004 * 117.50145 * 215.00601 * 22 9 7 32 32 H 1.08997 * 117.49741 * 0.02690 * 22 9 7 33 33 H 1.08998 * 117.49687 * 359.97438 * 23 9 7 34 34 H 1.09000 * 117.49977 * 144.97099 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0844 -1.1941 0.0166 9 6 1.2513 -2.4990 -0.0249 10 6 -0.0716 -2.5119 0.7437 11 7 0.1616 -2.0804 2.1242 12 6 -0.8476 -2.1043 3.0173 13 8 -1.9240 -2.5761 2.7057 14 6 -0.6461 -1.5579 4.3731 15 6 0.6192 -1.1188 4.7718 16 6 0.8030 -0.6150 6.0405 17 6 -0.2656 -0.5379 6.9222 18 9 -0.0775 -0.0431 8.1652 19 6 -1.5242 -0.9656 6.5335 20 6 -1.7220 -1.4726 5.2633 21 9 -2.9496 -1.8903 4.8842 22 6 1.3352 -3.3394 -1.3007 23 6 2.0735 -3.7892 -0.0376 24 1 -0.4850 0.8369 -0.0734 25 1 -0.4824 -3.5215 0.7431 26 1 -0.7767 -1.8323 0.2648 27 1 1.0422 -1.7776 2.3955 28 1 1.4526 -1.1781 4.0874 29 1 1.7817 -0.2794 6.3500 30 1 -2.3522 -0.9027 7.2241 31 1 0.4479 -3.9014 -1.5925 32 1 1.9355 -2.9485 -2.1222 33 1 3.1593 -3.6941 -0.0287 34 1 1.6722 -4.6470 0.5021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404133326.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:16 Heat of formation + Delta-G solvation = -74.091483 kcal Electronic energy + Delta-G solvation = -21685.755082 eV Core-core repulsion = 18027.547231 eV Total energy + Delta-G solvation = -3658.207851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.16456 -48.77660 -39.52465 -37.88661 -36.63916 -33.24875 -32.27761 -31.08462 -30.50663 -26.22060 -25.45616 -23.60900 -22.80685 -21.30175 -19.96716 -19.37685 -18.31003 -17.39861 -17.15562 -16.17483 -16.03808 -15.63513 -15.29411 -14.96997 -14.86539 -14.50698 -14.36033 -14.14212 -13.77268 -13.23858 -12.98050 -12.54535 -12.23752 -12.06775 -11.75689 -11.56529 -11.41753 -11.17434 -10.79810 -10.56798 -10.32639 -9.79559 -9.26448 -9.20167 -9.02927 -8.94026 -8.77767 -8.36359 -7.92357 -6.09103 -4.28755 0.60484 0.94988 2.96006 3.14306 3.25763 3.27377 3.71689 3.83433 4.02137 4.22372 4.33066 4.48167 4.71675 4.84528 5.00919 5.20577 5.41953 5.65654 5.68738 5.84675 5.96671 5.99932 6.00800 6.25349 6.47669 6.57258 6.62861 6.66809 6.84590 7.02376 7.20815 7.47089 7.53881 7.88937 8.23129 8.42137 8.74106 9.00948 9.35029 10.80811 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.016841 B = 0.005757 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.205395 B = 4862.560717 C = 5651.317042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.497 4.497 8 H 0.063 0.937 9 C 0.033 3.967 10 C 0.163 3.837 11 N -0.672 5.672 12 C 0.545 3.455 13 O -0.548 6.548 14 C -0.165 4.165 15 C -0.029 4.029 16 C -0.172 4.172 17 C 0.143 3.857 18 F -0.132 7.132 19 C -0.206 4.206 20 C 0.184 3.816 21 F -0.107 7.107 22 C -0.197 4.197 23 C -0.212 4.212 24 H 0.263 0.737 25 H 0.027 0.973 26 H 0.116 0.884 27 H 0.399 0.601 28 H 0.152 0.848 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.389 -0.659 11.378 11.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.534 4.534 8 H 0.081 0.919 9 C 0.033 3.967 10 C 0.041 3.959 11 N -0.319 5.319 12 C 0.329 3.671 13 O -0.428 6.428 14 C -0.170 4.170 15 C -0.047 4.047 16 C -0.191 4.191 17 C 0.123 3.877 18 F -0.110 7.110 19 C -0.226 4.226 20 C 0.163 3.837 21 F -0.085 7.085 22 C -0.235 4.235 23 C -0.249 4.249 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.134 0.866 27 H 0.234 0.766 28 H 0.169 0.831 29 H 0.165 0.835 30 H 0.169 0.831 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.427 -0.843 11.191 11.231 hybrid contribution 0.749 1.116 0.149 1.352 sum 1.176 0.273 11.340 11.404 Atomic orbital electron populations 1.69858 1.05720 1.26804 1.48079 1.25017 0.94860 0.99125 0.94127 0.86536 0.80091 0.83535 0.77941 1.19666 1.20819 1.20812 1.20570 0.92563 0.88473 1.51781 0.91920 1.19247 0.93133 0.89792 0.94577 1.21178 0.98301 0.97061 0.79400 1.45594 1.11855 1.63441 1.10962 1.17705 0.85079 0.80457 0.83814 1.90775 1.25567 1.47056 1.79412 1.20494 0.93726 1.06123 0.96624 1.21221 0.96162 0.92257 0.95106 1.21117 0.99262 1.04735 0.93975 1.17457 0.93539 0.96421 0.80297 1.91527 1.95820 1.84849 1.38825 1.20943 0.98074 1.06691 0.96882 1.17287 0.80475 0.94497 0.91473 1.91619 1.39049 1.86573 1.91251 1.22934 1.01344 1.06507 0.92741 1.22962 0.98082 1.00480 1.03362 0.92605 0.95515 0.86627 0.76606 0.83082 0.83538 0.83130 0.91398 0.90163 0.90579 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.23 10.22 55.43 0.57 -21.66 16 2 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 3 Si 0.89 19.19 29.54 -169.99 -5.02 14.17 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.50 -11.98 8.32 -34.44 -0.29 -12.26 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.03 0.75 2.06 -155.66 -0.32 0.43 16 10 C 0.16 3.76 4.63 -4.04 -0.02 3.74 16 11 N -0.67 -13.94 5.12 -61.33 -0.31 -14.25 16 12 C 0.54 11.34 7.75 -12.46 -0.10 11.25 16 13 O -0.55 -13.28 15.34 5.29 0.08 -13.20 16 14 C -0.17 -2.78 5.88 -104.91 -0.62 -3.40 16 15 C -0.03 -0.39 9.53 -39.21 -0.37 -0.76 16 16 C -0.17 -1.97 10.01 -39.57 -0.40 -2.36 16 17 C 0.14 1.71 7.30 -39.29 -0.29 1.42 16 18 F -0.13 -1.52 17.26 2.25 0.04 -1.48 16 19 C -0.21 -2.61 9.99 -39.50 -0.39 -3.00 16 20 C 0.18 2.92 7.28 -38.97 -0.28 2.64 16 21 F -0.11 -1.93 15.56 2.25 0.04 -1.89 16 22 C -0.20 -4.16 9.96 -26.70 -0.27 -4.43 16 23 C -0.21 -4.24 9.92 -26.70 -0.26 -4.50 16 24 H 0.26 6.62 8.32 -40.82 -0.34 6.28 16 25 H 0.03 0.61 8.05 -51.93 -0.42 0.20 16 26 H 0.12 3.04 5.90 -51.93 -0.31 2.73 16 27 H 0.40 7.62 5.99 -40.82 -0.24 7.37 16 28 H 0.15 1.84 6.42 -52.48 -0.34 1.51 16 29 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 303.46 15.07 4.57 4.57 Total: -1.00 -27.74 303.46 -7.13 -34.87 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -3.39 Total: 8.43 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -3.70 Total: -9.56 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.25 Total: -35.91 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.07 Total: -3.38 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.74 -7.13 -34.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404133326.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.224 kcal (2) G-P(sol) polarization free energy of solvation -27.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds