Wall clock time and date at job start Tue Mar 31 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99944 * 2 1 4 4 H 1.48494 * 109.46898 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47054 * 299.99803 * 3 2 1 6 6 H 1.48493 * 109.47262 * 59.99663 * 3 2 1 7 7 C 1.37874 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00460 * 181.05284 * 7 2 1 9 9 C 1.50702 * 119.99916 * 1.04605 * 7 2 1 10 10 C 1.53002 * 115.55082 * 325.11379 * 9 7 2 11 11 N 1.46504 * 109.46959 * 305.46939 * 10 9 7 12 12 C 1.34780 * 120.00096 * 184.70902 * 11 10 9 13 13 O 1.21585 * 119.99689 * 5.45339 * 12 11 10 14 14 C 1.47563 * 119.99944 * 185.45952 * 12 11 10 15 15 C 1.39736 * 120.14543 * 354.58514 * 14 12 11 16 16 C 1.37734 * 119.90753 * 180.28206 * 15 14 12 17 17 C 1.38756 * 120.18968 * 359.77003 * 16 15 14 18 18 F 1.35103 * 119.85426 * 179.97438 * 17 16 15 19 19 C 1.38496 * 120.28967 * 359.95206 * 17 16 15 20 20 C 1.38192 * 120.08894 * 0.02562 * 19 17 16 21 21 F 1.35102 * 120.09603 * 179.97438 * 20 19 17 22 22 C 1.52997 * 117.50019 * 110.77867 * 9 7 2 23 23 C 1.52996 * 117.50217 * 179.43903 * 9 7 2 24 24 H 0.97001 * 119.99840 * 5.01019 * 1 2 3 25 25 H 1.09002 * 109.47573 * 185.47249 * 10 9 7 26 26 H 1.09004 * 109.47505 * 65.46688 * 10 9 7 27 27 H 0.97002 * 120.00034 * 4.70529 * 11 10 9 28 28 H 1.08006 * 120.04277 * 0.02562 * 15 14 12 29 29 H 1.07998 * 119.90558 * 179.74231 * 16 15 14 30 30 H 1.07999 * 119.95564 * 180.02562 * 19 17 16 31 31 H 1.09004 * 117.50145 * 215.00601 * 22 9 7 32 32 H 1.08997 * 117.49741 * 0.02690 * 22 9 7 33 33 H 1.08998 * 117.49687 * 359.97438 * 23 9 7 34 34 H 1.09000 * 117.49977 * 144.97099 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0844 -1.1941 0.0166 9 6 1.2513 -2.4990 -0.0249 10 6 -0.0716 -2.5119 0.7437 11 7 0.1616 -2.0804 2.1242 12 6 -0.8476 -2.1043 3.0173 13 8 -1.9240 -2.5761 2.7057 14 6 -0.6461 -1.5579 4.3731 15 6 0.6192 -1.1188 4.7718 16 6 0.8030 -0.6150 6.0405 17 6 -0.2656 -0.5379 6.9222 18 9 -0.0775 -0.0431 8.1652 19 6 -1.5242 -0.9656 6.5335 20 6 -1.7220 -1.4726 5.2633 21 9 -2.9496 -1.8903 4.8842 22 6 1.3352 -3.3394 -1.3007 23 6 2.0735 -3.7892 -0.0376 24 1 -0.4850 0.8369 -0.0734 25 1 -0.4824 -3.5215 0.7431 26 1 -0.7767 -1.8323 0.2648 27 1 1.0422 -1.7776 2.3955 28 1 1.4526 -1.1781 4.0874 29 1 1.7817 -0.2794 6.3500 30 1 -2.3522 -0.9027 7.2241 31 1 0.4479 -3.9014 -1.5925 32 1 1.9355 -2.9485 -2.1222 33 1 3.1593 -3.6941 -0.0287 34 1 1.6722 -4.6470 0.5021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404133326.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:16 Heat of formation + Delta-G solvation = -89.080587 kcal Electronic energy + Delta-G solvation = -21686.405058 eV Core-core repulsion = 18027.547231 eV Total energy + Delta-G solvation = -3658.857827 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.12145 -50.05104 -40.96038 -39.24715 -38.33777 -34.93023 -34.12777 -32.23294 -31.64603 -27.94184 -27.25565 -24.80263 -23.95561 -22.95762 -21.47318 -21.13659 -19.51165 -18.82887 -18.36711 -17.77188 -17.15459 -16.81142 -16.72384 -16.47426 -16.40604 -15.93302 -15.73187 -15.49344 -15.23208 -14.77880 -14.33988 -14.01175 -13.69074 -13.48434 -13.35031 -12.98605 -12.91866 -12.56959 -12.53955 -12.24144 -12.02955 -11.54666 -10.99557 -10.82712 -10.66951 -10.26461 -10.15520 -9.97046 -9.61592 -7.94307 -6.19499 -0.54448 -0.09108 1.43630 1.50612 1.58897 1.70918 2.31636 2.43725 2.58277 2.69666 3.06939 3.23227 3.46144 3.62569 3.75627 3.81396 4.04674 4.26681 4.53665 4.60032 4.61511 4.75380 4.80711 4.83429 4.90804 4.95528 4.97664 5.13780 5.30817 5.53519 5.58742 5.61338 5.79664 5.97748 6.38304 6.74376 6.91558 7.39963 7.46354 8.93343 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.016841 B = 0.005757 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.205395 B = 4862.560717 C = 5651.317042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.036 3.964 3 Si 0.948 3.052 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.500 4.500 8 H 0.063 0.937 9 C 0.006 3.994 10 C 0.174 3.826 11 N -0.667 5.667 12 C 0.540 3.460 13 O -0.593 6.593 14 C -0.191 4.191 15 C -0.024 4.024 16 C -0.153 4.153 17 C 0.155 3.845 18 F -0.123 7.123 19 C -0.194 4.194 20 C 0.161 3.839 21 F -0.128 7.128 22 C -0.200 4.200 23 C -0.185 4.185 24 H 0.257 0.743 25 H 0.019 0.981 26 H 0.081 0.919 27 H 0.406 0.594 28 H 0.163 0.837 29 H 0.184 0.816 30 H 0.175 0.825 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.507 0.028 13.265 13.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.166 4.166 3 Si 0.775 3.225 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.537 4.537 8 H 0.081 0.919 9 C 0.006 3.994 10 C 0.050 3.950 11 N -0.314 5.314 12 C 0.327 3.673 13 O -0.477 6.477 14 C -0.195 4.195 15 C -0.043 4.043 16 C -0.172 4.172 17 C 0.135 3.865 18 F -0.101 7.101 19 C -0.213 4.213 20 C 0.140 3.860 21 F -0.106 7.106 22 C -0.238 4.238 23 C -0.222 4.222 24 H 0.067 0.933 25 H 0.037 0.963 26 H 0.099 0.901 27 H 0.243 0.757 28 H 0.180 0.820 29 H 0.201 0.799 30 H 0.192 0.808 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.586 -0.156 13.094 13.348 hybrid contribution 0.117 0.895 -0.377 0.978 sum 2.703 0.739 12.717 13.022 Atomic orbital electron populations 1.70048 1.06930 1.26830 1.49322 1.25598 0.95290 1.01675 0.94028 0.85651 0.79343 0.80179 0.77337 1.18786 1.21885 1.20520 1.20738 0.92555 0.89156 1.51271 0.91888 1.19295 0.93501 0.90687 0.95946 1.20833 0.97974 0.95608 0.80561 1.45475 1.12358 1.63402 1.10176 1.18329 0.84182 0.79489 0.85285 1.90733 1.27201 1.49070 1.80678 1.20273 0.95798 1.08681 0.94789 1.21334 0.94908 0.91778 0.96275 1.21439 1.00665 1.02568 0.92482 1.17488 0.93264 0.95267 0.80492 1.91563 1.95716 1.84520 1.38304 1.21091 0.99388 1.05183 0.95653 1.17561 0.79646 0.96026 0.92745 1.91561 1.40281 1.87148 1.91649 1.22962 1.01898 1.06243 0.92743 1.22952 0.98400 0.99083 1.01803 0.93297 0.96301 0.90138 0.75671 0.81955 0.79880 0.80803 0.90867 0.90249 0.89396 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.66 10.22 21.45 0.22 -46.44 16 2 C 0.04 1.72 5.29 84.65 0.45 2.17 16 3 Si 0.95 38.91 29.54 68.60 2.03 40.94 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 5 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.50 -23.75 8.32 25.60 0.21 -23.54 16 8 H 0.06 2.94 7.81 -2.91 -0.02 2.92 16 9 C 0.01 0.29 2.06 -52.93 -0.11 0.18 16 10 C 0.17 8.23 4.63 86.38 0.40 8.63 16 11 N -0.67 -28.14 5.12 -466.22 -2.39 -30.53 16 12 C 0.54 23.17 7.75 86.70 0.67 23.84 16 13 O -0.59 -30.22 15.34 -3.98 -0.06 -30.29 16 14 C -0.19 -6.39 5.88 -20.05 -0.12 -6.51 16 15 C -0.02 -0.60 9.53 22.51 0.21 -0.39 16 16 C -0.15 -2.90 10.01 22.27 0.22 -2.68 16 17 C 0.15 3.14 7.30 22.46 0.16 3.31 16 18 F -0.12 -2.32 17.26 44.97 0.78 -1.55 16 19 C -0.19 -4.48 9.99 22.32 0.22 -4.25 16 20 C 0.16 5.08 7.28 22.66 0.16 5.25 16 21 F -0.13 -4.78 15.56 44.97 0.70 -4.08 16 22 C -0.20 -8.33 9.96 30.62 0.30 -8.02 16 23 C -0.19 -7.11 9.92 30.62 0.30 -6.80 16 24 H 0.26 13.25 8.32 -92.71 -0.77 12.47 16 25 H 0.02 0.90 8.05 -2.39 -0.02 0.88 16 26 H 0.08 4.43 5.90 -2.39 -0.01 4.41 16 27 H 0.41 15.44 5.99 -92.71 -0.56 14.88 16 28 H 0.16 3.59 6.42 -2.91 -0.02 3.58 16 29 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 30 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 31 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 32 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 33 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -61.02 303.46 4.97 -56.05 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.59 Total: 24.72 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 3.10 Total: -8.83 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -2.17 Total: -76.97 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.06 Total: -30.29 kcal Atomic # 9 Polarization: -7.10 SS G_CDS: 1.48 Total: -5.63 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -61.02 4.97 -56.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404133326.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.032 kcal (2) G-P(sol) polarization free energy of solvation -61.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds