Wall clock time and date at job start Tue Mar 31 2020 05:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35783 * 116.99830 * 2 1 4 4 C 1.38020 * 123.47659 * 0.19595 * 3 2 1 5 5 C 1.33613 * 115.08970 * 180.31457 * 4 3 2 6 6 S 1.70575 * 111.14296 * 359.72582 * 5 4 3 7 7 C 1.37272 * 123.47219 * 179.97438 * 3 2 1 8 8 C 1.41731 * 125.47254 * 359.97438 * 7 3 2 9 9 O 1.21765 * 120.00294 * 355.03452 * 8 7 3 10 10 N 1.34783 * 119.99557 * 175.30350 * 8 7 3 11 11 C 1.46501 * 119.99723 * 185.35505 * 10 8 7 12 12 C 1.52991 * 109.46949 * 185.20051 * 11 10 8 13 13 C 1.50699 * 115.55277 * 57.84362 * 12 11 10 14 14 H 1.07998 * 119.99720 * 264.64633 * 13 12 11 15 15 C 1.37874 * 120.00323 * 84.64168 * 13 12 11 16 16 N 1.31520 * 120.00091 * 1.97732 * 15 13 12 17 17 Si 1.86807 * 120.00194 * 181.97251 * 15 13 12 18 18 H 1.48505 * 109.46552 * 60.00442 * 17 15 13 19 19 H 1.48495 * 109.46930 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47213 * 300.00512 * 17 15 13 21 21 C 1.53001 * 117.50216 * 272.16852 * 12 11 10 22 22 C 1.53002 * 117.49837 * 203.50746 * 12 11 10 23 23 H 1.09003 * 109.47149 * 300.00046 * 1 2 3 24 24 H 1.08998 * 109.47092 * 60.00485 * 1 2 3 25 25 H 1.09007 * 109.46973 * 179.97438 * 1 2 3 26 26 H 1.08005 * 122.45214 * 0.04076 * 4 3 2 27 27 H 1.07999 * 124.42659 * 179.74708 * 5 4 3 28 28 H 0.96994 * 120.00152 * 5.36482 * 10 8 7 29 29 H 1.09005 * 109.46920 * 305.20518 * 11 10 8 30 30 H 1.09007 * 109.47039 * 65.19958 * 11 10 8 31 31 H 0.96989 * 119.99991 * 185.01288 * 16 15 13 32 32 H 1.09004 * 117.49552 * 0.02562 * 21 12 11 33 33 H 1.08995 * 117.50026 * 145.02151 * 21 12 11 34 34 H 1.08996 * 117.50446 * 214.97891 * 22 12 11 35 35 H 1.08996 * 117.49927 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.3652 2.4108 0.0039 5 6 2.1389 3.5001 -0.0034 6 16 3.7922 3.0805 -0.0082 7 6 3.4094 1.3646 0.0005 8 6 4.3567 0.3105 0.0016 9 8 3.9823 -0.8445 0.0935 10 7 5.6725 0.5869 -0.0935 11 6 6.6435 -0.5038 -0.2106 12 6 8.0614 0.0694 -0.1720 13 6 8.4059 0.8693 1.0578 14 1 8.3076 1.9448 1.0475 15 6 8.8463 0.2283 2.1963 16 7 9.0030 -1.0776 2.1968 17 14 9.2206 1.2144 3.7380 18 1 7.9949 1.9273 4.1792 19 1 9.6749 0.2973 4.8140 20 1 10.2900 2.2025 3.4462 21 6 8.6809 0.5121 -1.4991 22 6 9.1769 -0.7614 -0.8095 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2866 2.4660 0.0080 27 1 1.7662 4.5138 -0.0056 28 1 5.9765 1.5079 -0.0844 29 1 6.5100 -1.1996 0.6178 30 1 6.4890 -1.0281 -1.1538 31 1 9.2424 -1.5370 3.0167 32 1 8.0781 0.3953 -2.3997 33 1 9.3378 1.3817 -1.4825 34 1 10.1599 -0.7291 -0.3398 35 1 8.9006 -1.7165 -1.2561 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404147169.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:30 Heat of formation + Delta-G solvation = -12.924721 kcal Electronic energy + Delta-G solvation = -19567.768718 eV Core-core repulsion = 16466.053644 eV Total energy + Delta-G solvation = -3101.715075 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.06058 -38.56730 -36.59061 -35.87336 -33.16226 -31.92166 -30.22192 -27.42113 -26.08051 -25.25378 -24.20540 -21.22469 -20.75543 -19.66337 -19.31654 -18.13850 -16.88878 -16.01843 -15.86353 -15.70339 -14.89263 -14.69788 -14.45445 -14.35438 -13.85680 -13.58474 -13.08515 -12.68098 -12.58613 -12.52372 -11.74787 -11.62646 -11.46717 -11.13076 -10.94882 -10.91984 -10.87877 -10.51463 -10.20085 -9.56294 -9.26493 -9.00514 -8.79925 -8.42763 -8.24003 -8.06356 -7.89157 -6.03270 -4.12309 0.59639 1.50430 1.83604 2.40712 3.30597 3.36370 3.37384 3.51255 3.87772 4.04227 4.40019 4.62986 5.00991 5.03664 5.07019 5.25623 5.35908 5.40315 5.45016 5.69204 5.78607 6.06742 6.17377 6.38135 6.54461 6.59298 6.74971 6.95364 7.15915 7.29897 7.37939 7.46239 7.57615 7.85046 8.37957 8.38855 8.88341 8.99112 9.54728 11.05025 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019296 B = 0.005104 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.699984 B = 5484.632807 C = 5791.082917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.271 6.271 3 C 0.173 3.827 4 C -0.212 4.212 5 C -0.212 4.212 6 S 0.238 5.762 7 C -0.306 4.306 8 C 0.581 3.419 9 O -0.537 6.537 10 N -0.702 5.702 11 C 0.166 3.834 12 C 0.024 3.976 13 C -0.498 4.498 14 H 0.059 0.941 15 C 0.075 3.925 16 N -0.874 5.874 17 Si 0.888 3.112 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.212 4.212 22 C -0.143 4.143 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.101 0.899 26 H 0.146 0.854 27 H 0.171 0.829 28 H 0.395 0.605 29 H 0.073 0.927 30 H 0.036 0.964 31 H 0.262 0.738 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.599 8.873 -5.082 17.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.182 6.182 3 C 0.113 3.887 4 C -0.246 4.246 5 C -0.350 4.350 6 S 0.503 5.497 7 C -0.426 4.426 8 C 0.368 3.632 9 O -0.417 6.417 10 N -0.351 5.351 11 C 0.042 3.958 12 C 0.023 3.977 13 C -0.536 4.536 14 H 0.077 0.923 15 C -0.129 4.129 16 N -0.510 5.510 17 Si 0.715 3.285 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.250 4.250 22 C -0.181 4.181 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.119 0.881 26 H 0.164 0.836 27 H 0.188 0.812 28 H 0.229 0.771 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.278 8.492 -4.939 16.517 hybrid contribution -1.367 0.323 0.983 1.714 sum -14.645 8.815 -3.956 17.545 Atomic orbital electron populations 1.23137 0.78911 1.04156 1.00968 1.86362 1.20364 1.24140 1.87359 1.18254 0.90291 0.85339 0.94838 1.19989 1.01781 0.91033 1.11791 1.25024 0.99686 1.03522 1.06811 1.83248 1.02679 0.95960 1.67785 1.23029 0.95567 0.98401 1.25649 1.15587 0.82108 0.87507 0.78042 1.90824 1.79817 1.20382 1.50684 1.45819 1.05177 1.11045 1.73098 1.20944 0.87469 0.88044 0.99306 1.19052 0.88932 0.98800 0.90923 1.20282 1.45215 0.92526 0.95568 0.92292 1.24968 0.94388 0.94947 0.98642 1.69975 1.46285 1.07433 1.27341 0.86730 0.78784 0.79995 0.82946 1.20162 1.21271 1.20188 1.23051 1.05872 0.99286 0.96745 1.22457 1.00544 0.92170 1.02962 0.92795 0.92857 0.88070 0.83613 0.81154 0.77073 0.90915 0.94611 0.92830 0.91665 0.90376 0.89609 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.94 101.05 1.00 1.24 16 2 O -0.27 -4.42 9.38 -36.45 -0.34 -4.76 16 3 C 0.17 2.71 6.70 -40.01 -0.27 2.44 16 4 C -0.21 -2.44 9.17 -41.28 -0.38 -2.82 16 5 C -0.21 -2.19 10.90 29.11 0.32 -1.87 16 6 S 0.24 3.06 22.01 -107.50 -2.37 0.69 16 7 C -0.31 -5.36 6.28 -38.60 -0.24 -5.60 16 8 C 0.58 12.53 7.59 -14.92 -0.11 12.42 16 9 O -0.54 -13.46 15.83 -12.25 -0.19 -13.65 16 10 N -0.70 -15.00 5.36 -63.19 -0.34 -15.34 16 11 C 0.17 3.93 5.57 -4.05 -0.02 3.91 16 12 C 0.02 0.57 1.51 -155.66 -0.23 0.34 16 13 C -0.50 -13.03 8.38 -34.44 -0.29 -13.32 16 14 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 15 C 0.07 2.02 5.43 -17.82 -0.10 1.92 16 16 N -0.87 -24.74 12.73 55.43 0.71 -24.04 16 17 Si 0.89 20.90 29.54 -169.99 -5.02 15.87 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 C -0.21 -4.50 9.94 -26.69 -0.27 -4.77 16 22 C -0.14 -3.34 9.26 -26.69 -0.25 -3.59 16 23 H 0.05 0.45 7.87 -51.93 -0.41 0.04 16 24 H 0.05 0.42 7.89 -51.93 -0.41 0.02 16 25 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.15 1.23 6.99 -52.48 -0.37 0.86 16 27 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.40 7.75 7.22 -40.82 -0.29 7.46 16 29 H 0.07 1.97 8.09 -51.93 -0.42 1.55 16 30 H 0.04 0.82 8.11 -51.93 -0.42 0.40 16 31 H 0.26 7.16 8.32 -40.82 -0.34 6.82 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 34 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 35 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 317.90 15.07 4.79 4.79 Total: -1.00 -32.40 317.90 -8.00 -40.41 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -4.40 Total: 5.72 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -0.84 Total: -9.70 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.37 Total: -39.38 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.54 Total: -18.41 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -2.37 Total: 0.69 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.40 -8.00 -40.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404147169.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.485 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds