Wall clock time and date at job start Tue Mar 31 2020 05:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35783 * 116.99830 * 2 1 4 4 C 1.38020 * 123.47659 * 0.19595 * 3 2 1 5 5 C 1.33613 * 115.08970 * 180.31457 * 4 3 2 6 6 S 1.70575 * 111.14296 * 359.72582 * 5 4 3 7 7 C 1.37272 * 123.47219 * 179.97438 * 3 2 1 8 8 C 1.41731 * 125.47254 * 359.97438 * 7 3 2 9 9 O 1.21765 * 120.00294 * 355.03452 * 8 7 3 10 10 N 1.34783 * 119.99557 * 175.30350 * 8 7 3 11 11 C 1.46501 * 119.99723 * 185.35505 * 10 8 7 12 12 C 1.52991 * 109.46949 * 185.20051 * 11 10 8 13 13 C 1.50699 * 115.55277 * 57.84362 * 12 11 10 14 14 H 1.07998 * 119.99720 * 264.64633 * 13 12 11 15 15 C 1.37874 * 120.00323 * 84.64168 * 13 12 11 16 16 N 1.31520 * 120.00091 * 1.97732 * 15 13 12 17 17 Si 1.86807 * 120.00194 * 181.97251 * 15 13 12 18 18 H 1.48505 * 109.46552 * 60.00442 * 17 15 13 19 19 H 1.48495 * 109.46930 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47213 * 300.00512 * 17 15 13 21 21 C 1.53001 * 117.50216 * 272.16852 * 12 11 10 22 22 C 1.53002 * 117.49837 * 203.50746 * 12 11 10 23 23 H 1.09003 * 109.47149 * 300.00046 * 1 2 3 24 24 H 1.08998 * 109.47092 * 60.00485 * 1 2 3 25 25 H 1.09007 * 109.46973 * 179.97438 * 1 2 3 26 26 H 1.08005 * 122.45214 * 0.04076 * 4 3 2 27 27 H 1.07999 * 124.42659 * 179.74708 * 5 4 3 28 28 H 0.96994 * 120.00152 * 5.36482 * 10 8 7 29 29 H 1.09005 * 109.46920 * 305.20518 * 11 10 8 30 30 H 1.09007 * 109.47039 * 65.19958 * 11 10 8 31 31 H 0.96989 * 119.99991 * 185.01288 * 16 15 13 32 32 H 1.09004 * 117.49552 * 0.02562 * 21 12 11 33 33 H 1.08995 * 117.50026 * 145.02151 * 21 12 11 34 34 H 1.08996 * 117.50446 * 214.97891 * 22 12 11 35 35 H 1.08996 * 117.49927 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.3652 2.4108 0.0039 5 6 2.1389 3.5001 -0.0034 6 16 3.7922 3.0805 -0.0082 7 6 3.4094 1.3646 0.0005 8 6 4.3567 0.3105 0.0016 9 8 3.9823 -0.8445 0.0935 10 7 5.6725 0.5869 -0.0935 11 6 6.6435 -0.5038 -0.2106 12 6 8.0614 0.0694 -0.1720 13 6 8.4059 0.8693 1.0578 14 1 8.3076 1.9448 1.0475 15 6 8.8463 0.2283 2.1963 16 7 9.0030 -1.0776 2.1968 17 14 9.2206 1.2144 3.7380 18 1 7.9949 1.9273 4.1792 19 1 9.6749 0.2973 4.8140 20 1 10.2900 2.2025 3.4462 21 6 8.6809 0.5121 -1.4991 22 6 9.1769 -0.7614 -0.8095 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.2866 2.4660 0.0080 27 1 1.7662 4.5138 -0.0056 28 1 5.9765 1.5079 -0.0844 29 1 6.5100 -1.1996 0.6178 30 1 6.4890 -1.0281 -1.1538 31 1 9.2424 -1.5370 3.0167 32 1 8.0781 0.3953 -2.3997 33 1 9.3378 1.3817 -1.4825 34 1 10.1599 -0.7291 -0.3398 35 1 8.9006 -1.7165 -1.2561 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404147169.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:29 Heat of formation + Delta-G solvation = -34.217153 kcal Electronic energy + Delta-G solvation = -19568.692028 eV Core-core repulsion = 16466.053644 eV Total energy + Delta-G solvation = -3102.638384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27757 -40.09693 -38.40904 -36.91032 -34.93555 -33.95951 -31.38590 -28.63850 -27.67503 -26.94275 -25.39950 -22.97522 -22.21330 -21.35325 -20.56188 -19.61896 -18.24544 -17.66705 -17.08352 -16.92813 -16.62568 -16.21604 -16.01225 -15.83770 -15.20653 -14.73385 -14.68660 -14.29224 -13.96579 -13.55501 -13.50347 -13.33030 -12.90499 -12.78275 -12.49596 -12.39111 -12.01667 -12.00536 -11.87640 -11.42981 -11.03192 -10.93692 -10.41142 -10.13928 -9.95258 -9.64167 -9.05671 -8.09116 -6.22624 -0.46702 0.46938 0.89064 1.37942 1.43291 1.44511 1.51022 2.33203 2.41141 2.48158 2.55443 3.19829 3.50777 3.76192 4.11721 4.22812 4.31795 4.35277 4.39691 4.53836 4.64772 4.67385 4.70474 4.71990 4.88059 4.99880 5.03009 5.17753 5.28551 5.54676 5.61382 5.70854 5.77677 6.32080 6.36660 6.74791 6.85007 7.36479 7.47098 8.98900 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019296 B = 0.005104 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.699984 B = 5484.632807 C = 5791.082917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.313 6.313 3 C 0.181 3.819 4 C -0.221 4.221 5 C -0.172 4.172 6 S 0.253 5.747 7 C -0.375 4.375 8 C 0.579 3.421 9 O -0.590 6.590 10 N -0.700 5.700 11 C 0.181 3.819 12 C -0.002 4.002 13 C -0.502 4.502 14 H 0.065 0.935 15 C 0.023 3.977 16 N -0.909 5.909 17 Si 0.947 3.053 18 H -0.272 1.272 19 H -0.292 1.292 20 H -0.265 1.265 21 C -0.176 4.176 22 C -0.153 4.153 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.109 0.891 26 H 0.184 0.816 27 H 0.219 0.781 28 H 0.404 0.596 29 H 0.026 0.974 30 H 0.038 0.962 31 H 0.258 0.742 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.503 12.264 -5.567 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.225 6.225 3 C 0.119 3.881 4 C -0.253 4.253 5 C -0.310 4.310 6 S 0.518 5.482 7 C -0.495 4.495 8 C 0.369 3.631 9 O -0.474 6.474 10 N -0.350 5.350 11 C 0.057 3.943 12 C -0.003 4.003 13 C -0.539 4.539 14 H 0.083 0.917 15 C -0.177 4.177 16 N -0.547 5.547 17 Si 0.773 3.227 18 H -0.197 1.197 19 H -0.218 1.218 20 H -0.189 1.189 21 C -0.213 4.213 22 C -0.191 4.191 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.127 0.873 26 H 0.201 0.799 27 H 0.236 0.764 28 H 0.239 0.761 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.186 11.925 -5.436 20.059 hybrid contribution -0.925 -0.687 1.092 1.587 sum -16.111 11.238 -4.344 20.118 Atomic orbital electron populations 1.23495 0.75894 1.05595 1.03088 1.86306 1.23730 1.25525 1.86930 1.18768 0.90112 0.86576 0.92618 1.20226 1.03594 0.89316 1.12208 1.25615 0.97781 1.05353 1.02268 1.83100 1.04781 0.92383 1.67948 1.22826 0.95685 1.00045 1.30912 1.16149 0.82399 0.88051 0.76489 1.90769 1.80548 1.22845 1.53250 1.45694 1.05074 1.10733 1.73481 1.20555 0.88238 0.88138 0.97414 1.19098 0.88992 0.99975 0.92220 1.20613 1.44049 0.92960 0.96303 0.91709 1.25726 0.94630 0.95744 1.01632 1.70115 1.47882 1.08964 1.27713 0.85780 0.78837 0.78684 0.79393 1.19714 1.21774 1.18939 1.23045 1.04407 0.98060 0.95833 1.22378 0.99310 0.93597 1.03803 0.90766 0.90432 0.87251 0.79930 0.76431 0.76058 0.95568 0.94396 0.93322 0.89266 0.89335 0.91604 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.94 113.37 1.13 1.37 16 2 O -0.31 -10.15 9.38 -74.50 -0.70 -10.85 16 3 C 0.18 5.47 6.70 21.99 0.15 5.62 16 4 C -0.22 -4.21 9.17 21.17 0.19 -4.02 16 5 C -0.17 -2.72 10.90 66.77 0.73 -1.99 16 6 S 0.25 5.93 22.01 -56.49 -1.24 4.68 16 7 C -0.38 -13.13 6.28 22.91 0.14 -12.99 16 8 C 0.58 26.04 7.59 85.10 0.65 26.69 16 9 O -0.59 -31.46 15.83 12.07 0.19 -31.27 16 10 N -0.70 -30.89 5.36 -472.01 -2.53 -33.42 16 11 C 0.18 8.97 5.57 86.38 0.48 9.45 16 12 C 0.00 -0.10 1.51 -52.93 -0.08 -0.18 16 13 C -0.50 -26.42 8.38 25.60 0.21 -26.20 16 14 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 15 C 0.02 1.26 5.43 84.65 0.46 1.72 16 16 N -0.91 -53.24 12.73 21.45 0.27 -52.97 16 17 Si 0.95 43.25 29.54 68.60 2.03 45.28 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 21 C -0.18 -7.26 9.94 30.62 0.30 -6.96 16 22 C -0.15 -7.22 9.26 30.62 0.28 -6.93 16 23 H 0.07 1.01 7.87 -2.39 -0.02 1.00 16 24 H 0.08 1.00 7.89 -2.39 -0.02 0.98 16 25 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.18 2.08 6.99 -2.91 -0.02 2.06 16 27 H 0.22 1.40 8.06 -2.91 -0.02 1.38 16 28 H 0.40 16.02 7.22 -92.71 -0.67 15.35 16 29 H 0.03 1.52 8.09 -2.38 -0.02 1.50 16 30 H 0.04 1.82 8.11 -2.38 -0.02 1.80 16 31 H 0.26 14.63 8.32 -92.72 -0.77 13.86 16 32 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 33 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 34 H 0.07 3.35 8.14 -2.39 -0.02 3.33 16 35 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -75.01 317.90 3.11 -71.90 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.44 Total: 21.06 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: 4.65 Total: -14.42 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -2.26 Total: -86.39 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -0.51 Total: -42.12 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -1.24 Total: 4.68 kcal Total: -75.01 3.11 -71.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404147169.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.687 kcal (2) G-P(sol) polarization free energy of solvation -75.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds