Wall clock time and date at job start Tue Mar 31 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00116 * 2 1 4 4 H 1.48496 * 109.46963 * 270.00189 * 3 2 1 5 5 H 1.48504 * 109.47009 * 29.99725 * 3 2 1 6 6 H 1.48500 * 109.47152 * 149.99922 * 3 2 1 7 7 C 1.37878 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00233 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99891 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46911 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99865 * 180.02562 * 10 9 7 12 12 O 1.21290 * 119.99919 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99997 * 179.97438 * 11 10 9 14 14 H 1.09000 * 115.56456 * 325.68907 * 13 11 10 15 15 C 1.53003 * 117.49654 * 111.37561 * 13 11 10 16 16 C 1.52995 * 60.00158 * 107.49080 * 15 13 11 17 17 H 1.09003 * 117.49951 * 252.49138 * 16 15 13 18 18 C 1.50701 * 117.50109 * 107.48720 * 16 15 13 19 19 C 1.38252 * 119.99905 * 351.36959 * 18 16 15 20 20 C 1.38212 * 120.07071 * 180.02562 * 19 18 16 21 21 C 1.38261 * 120.07169 * 359.97438 * 20 19 18 22 22 C 1.38370 * 119.99621 * 0.02562 * 21 20 19 23 23 F 1.35101 * 120.03211 * 180.02562 * 22 21 20 24 24 C 1.38375 * 119.99891 * 171.39229 * 18 16 15 25 25 F 1.35094 * 120.03531 * 359.70514 * 24 18 16 26 26 H 0.96999 * 120.00147 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46932 * 60.00840 * 9 7 2 28 28 H 1.09002 * 109.47329 * 300.00286 * 9 7 2 29 29 H 0.97002 * 119.99961 * 359.97438 * 10 9 7 30 30 H 1.08993 * 117.50102 * 0.02562 * 15 13 11 31 31 H 1.09000 * 117.51664 * 214.97072 * 15 13 11 32 32 H 1.08001 * 119.96635 * 0.02727 * 19 18 16 33 33 H 1.08003 * 119.96971 * 179.97438 * 20 19 18 34 34 H 1.07999 * 120.00304 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5614 -5.1050 -0.0011 13 6 2.7331 -6.0288 -0.0016 14 1 3.6561 -5.8583 -0.5559 15 6 2.8163 -6.8877 1.2618 16 6 2.1607 -7.4477 -0.0021 17 1 1.0757 -7.5530 -0.0019 18 6 2.9160 -8.5025 -0.7689 19 6 4.2225 -8.8011 -0.4297 20 6 4.9168 -9.7678 -1.1323 21 6 4.3060 -10.4387 -2.1756 22 6 2.9984 -10.1421 -2.5176 23 9 2.4007 -10.7975 -3.5366 24 6 2.3019 -9.1717 -1.8128 25 9 1.0234 -8.8843 -2.1413 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 0.6247 -2.5571 0.8897 29 1 3.1568 -3.4354 -0.0009 30 1 2.1624 -6.6246 2.0932 31 1 3.7937 -7.2826 1.5389 32 1 4.7012 -8.2785 0.3852 33 1 5.9375 -9.9996 -0.8662 34 1 4.8496 -11.1936 -2.7242 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427626577.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:55 Heat of formation + Delta-G solvation = -84.359706 kcal Electronic energy + Delta-G solvation = -20632.973701 eV Core-core repulsion = 16974.320587 eV Total energy + Delta-G solvation = -3658.653115 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.60293 -48.66736 -40.03908 -38.75935 -36.28548 -34.16999 -32.33092 -30.99881 -30.54337 -27.57932 -24.80723 -24.13082 -22.96195 -21.98325 -20.89639 -19.54193 -18.21108 -17.72480 -17.12910 -16.94394 -16.45399 -15.88860 -15.44452 -15.16066 -15.05973 -14.69177 -14.59064 -14.39087 -14.09323 -13.39627 -13.08804 -12.73947 -12.61477 -12.31432 -12.04482 -11.89327 -11.76184 -11.39407 -11.06814 -10.91391 -10.83181 -10.51618 -10.32288 -9.41859 -9.23399 -9.00740 -8.88878 -8.75470 -7.91642 -6.18001 -4.25246 0.63222 0.65834 2.88337 3.16748 3.23413 3.29357 3.31721 3.47048 3.88439 3.98626 4.14867 4.25998 4.36055 4.42370 4.60968 4.68780 4.79952 4.91141 5.07878 5.18152 5.42634 5.48166 5.50535 5.63392 5.67918 5.74250 5.88653 5.95167 6.18581 6.46209 7.28245 7.39873 7.49355 7.64410 7.95084 8.59482 8.75518 9.06301 9.41387 10.92222 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.030662 B = 0.003117 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.955733 B = 8979.828189 C = 9205.503459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.706 5.706 11 C 0.525 3.475 12 O -0.553 6.553 13 C -0.165 4.165 14 H 0.123 0.877 15 C -0.139 4.139 16 C -0.099 4.099 17 H 0.133 0.867 18 C -0.052 4.052 19 C -0.104 4.104 20 C -0.097 4.097 21 C -0.134 4.134 22 C 0.068 3.932 23 F -0.129 7.129 24 C 0.077 3.923 25 F -0.121 7.121 26 H 0.266 0.734 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.392 0.608 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.557 -20.350 -0.613 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.353 5.353 11 C 0.309 3.691 12 O -0.432 6.432 13 C -0.186 4.186 14 H 0.141 0.859 15 C -0.176 4.176 16 C -0.117 4.117 17 H 0.151 0.849 18 C -0.053 4.053 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.153 4.153 22 C 0.048 3.952 23 F -0.108 7.108 24 C 0.057 3.943 25 F -0.099 7.099 26 H 0.076 0.924 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.224 0.776 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.433 -20.339 -0.668 23.341 hybrid contribution 0.512 0.984 -0.421 1.187 sum 11.945 -19.354 -1.090 22.770 Atomic orbital electron populations 1.69977 1.06123 1.27347 1.48808 1.24961 0.94923 0.99485 0.94672 0.86403 0.79603 0.82591 0.78240 1.20446 1.20990 1.19723 1.21218 0.93274 0.90406 1.53325 0.91852 1.19142 0.88306 0.81895 0.97825 1.46385 1.11229 1.05827 1.71849 1.19439 0.88363 0.83725 0.77603 1.90674 1.16576 1.84796 1.51179 1.22484 1.01403 0.90779 1.03928 0.85870 1.23119 1.02630 1.00698 0.91194 1.20935 1.00405 0.90734 0.99667 0.84914 1.19165 0.94646 0.96825 0.94626 1.21087 0.92818 0.97923 1.00375 1.21048 1.00474 0.95443 0.94599 1.21080 0.92521 1.02154 0.99505 1.17686 0.92774 0.95360 0.89414 1.91533 1.83605 1.79185 1.56467 1.17507 0.80883 0.98328 0.97618 1.91566 1.34385 1.92363 1.91585 0.92410 0.95455 0.95452 0.77566 0.87300 0.87466 0.83946 0.84130 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 7 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.61 5.43 -5.19 -0.03 6.59 16 10 N -0.71 -14.81 5.55 -61.47 -0.34 -15.15 16 11 C 0.52 10.48 7.61 -10.99 -0.08 10.40 16 12 O -0.55 -13.45 16.26 5.55 0.09 -13.36 16 13 C -0.16 -2.30 5.82 -91.77 -0.53 -2.83 16 14 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 15 C -0.14 -1.53 9.56 -26.73 -0.26 -1.78 16 16 C -0.10 -1.30 5.31 -91.77 -0.49 -1.79 16 17 H 0.13 2.08 7.39 -51.93 -0.38 1.69 16 18 C -0.05 -0.58 5.62 -104.57 -0.59 -1.17 16 19 C -0.10 -0.84 9.30 -39.59 -0.37 -1.21 16 20 C -0.10 -0.65 10.04 -39.58 -0.40 -1.04 16 21 C -0.13 -1.06 10.02 -39.52 -0.40 -1.45 16 22 C 0.07 0.75 7.31 -39.37 -0.29 0.47 16 23 F -0.13 -1.58 17.18 2.25 0.04 -1.55 16 24 C 0.08 0.98 7.25 -39.36 -0.29 0.70 16 25 F -0.12 -1.85 16.52 2.25 0.04 -1.82 16 26 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.39 6.96 8.32 -40.82 -0.34 6.62 16 30 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.11 0.80 6.18 -51.93 -0.32 0.48 16 32 H 0.14 0.82 6.02 -52.49 -0.32 0.51 16 33 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 34 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 310.16 15.07 4.67 4.67 Total: -1.00 -33.10 310.16 -7.34 -40.44 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -3.43 Total: 2.92 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -4.13 Total: -6.51 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.40 Total: -40.54 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.08 Total: -3.36 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.10 -7.34 -40.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427626577.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.918 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds