Wall clock time and date at job start Tue Mar 31 2020 05:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99734 * 2 1 4 4 H 1.48494 * 109.47024 * 239.99767 * 3 2 1 5 5 H 1.48496 * 109.47076 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47055 * 119.99826 * 3 2 1 7 7 C 1.37879 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99669 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99924 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47095 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46962 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.46688 * 180.02562 * 11 10 9 13 13 C 1.46756 * 110.99691 * 190.00034 * 12 11 10 14 14 C 1.53423 * 108.59177 * 285.48786 * 13 12 11 15 15 O 1.43141 * 107.89999 * 296.75081 * 14 13 12 16 16 C 1.36178 * 116.67319 * 45.30417 * 15 14 13 17 17 C 1.38878 * 118.73872 * 165.25182 * 16 15 14 18 18 Cl 1.73596 * 119.90876 * 359.72900 * 17 16 15 19 19 C 1.38273 * 120.18202 * 179.75277 * 17 16 15 20 20 C 1.38259 * 120.01267 * 359.95813 * 19 17 16 21 21 C 1.38052 * 120.12213 * 0.33476 * 20 19 17 22 22 C 1.38914 * 121.38710 * 345.06708 * 16 15 14 23 23 H 0.97002 * 120.00339 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47438 * 59.99459 * 9 7 2 25 25 H 1.09000 * 109.47704 * 300.00002 * 9 7 2 26 26 H 1.08999 * 109.46741 * 60.00241 * 10 9 7 27 27 H 1.09003 * 109.46880 * 299.99983 * 10 9 7 28 28 H 1.08999 * 109.47213 * 59.99891 * 11 10 9 29 29 H 1.08997 * 109.47169 * 300.00071 * 11 10 9 30 30 H 1.09002 * 109.62010 * 165.75707 * 13 12 11 31 31 H 1.08996 * 109.62128 * 45.22266 * 13 12 11 32 32 H 1.09010 * 109.77444 * 177.15501 * 14 13 12 33 33 H 1.08998 * 109.82114 * 56.37831 * 14 13 12 34 34 H 1.08002 * 119.98980 * 179.97438 * 19 17 16 35 35 H 1.08002 * 119.93352 * 180.02562 * 20 19 17 36 36 H 1.08005 * 119.85998 * 179.76056 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4350 -6.1036 0.0005 13 6 1.7514 -7.3801 -0.2380 14 6 0.9979 -7.7773 1.0380 15 8 1.9642 -7.9816 2.0741 16 6 2.9428 -7.0419 2.1912 17 6 3.7097 -7.0170 3.3488 18 17 3.4054 -8.1666 4.6135 19 6 4.7146 -6.0789 3.4969 20 6 4.9590 -5.1626 2.4909 21 6 4.1967 -5.1774 1.3400 22 6 3.1857 -6.1204 1.1804 23 1 -0.4851 0.8400 0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6241 -2.5568 0.8903 26 1 2.8720 -3.6043 0.8905 27 1 2.8720 -3.6043 -0.8895 28 1 0.8540 -5.0446 -0.8903 29 1 0.8534 -5.0451 0.8896 30 1 2.4851 -8.1479 -0.4837 31 1 1.0450 -7.2689 -1.0605 32 1 0.4414 -8.6987 0.8660 33 1 0.3119 -6.9805 1.3254 34 1 5.3088 -6.0621 4.3986 35 1 5.7445 -4.4306 2.6078 36 1 4.3888 -4.4572 0.5584 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532127617.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:14 Heat of formation + Delta-G solvation = -15.190524 kcal Electronic energy + Delta-G solvation = -19821.455043 eV Core-core repulsion = 16717.598010 eV Total energy + Delta-G solvation = -3103.857034 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.21445 -37.67502 -37.12173 -36.03652 -33.76156 -31.64415 -30.83301 -30.18997 -27.98521 -25.99130 -24.26620 -23.20390 -22.43065 -20.61095 -19.80187 -17.99565 -16.97786 -16.82235 -16.14391 -15.38440 -15.05040 -14.82140 -14.44740 -14.39614 -14.17247 -13.98381 -13.17912 -13.04993 -12.39429 -12.28244 -11.97622 -11.75660 -11.59765 -11.47688 -11.14996 -11.03103 -10.84908 -10.81406 -10.58696 -10.47853 -9.75103 -9.42119 -9.27015 -9.06548 -8.37953 -8.21120 -7.92244 -6.02661 -4.05151 1.18424 1.31690 2.19059 3.13860 3.31944 3.36511 3.38596 3.55951 3.77397 4.43676 4.47457 4.79548 4.87695 4.91378 5.08477 5.21395 5.33351 5.33653 5.36791 5.55693 5.58261 5.64814 5.77528 6.02007 6.08997 6.18933 6.41245 6.47011 6.58403 6.66249 6.95575 7.04207 7.08873 7.39006 7.61864 7.75539 7.96059 8.38677 9.01172 9.59114 11.08768 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.004436 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.941647 B = 6310.969250 C = 7008.511904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.117 4.117 11 C 0.054 3.946 12 N -0.487 5.487 13 C 0.015 3.985 14 C 0.019 3.981 15 O -0.301 6.301 16 C 0.091 3.909 17 C -0.054 4.054 18 Cl -0.067 7.067 19 C -0.096 4.096 20 C -0.128 4.128 21 C -0.073 4.073 22 C 0.048 3.952 23 H 0.261 0.739 24 H 0.016 0.984 25 H 0.014 0.986 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.037 0.963 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.934 -16.317 3.845 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.154 4.154 11 C -0.070 4.070 12 N -0.203 5.203 13 C -0.113 4.113 14 C -0.058 4.058 15 O -0.214 6.214 16 C 0.043 3.957 17 C -0.081 4.081 18 Cl -0.039 7.039 19 C -0.115 4.115 20 C -0.147 4.147 21 C -0.092 4.092 22 C -0.049 4.049 23 H 0.071 0.929 24 H 0.034 0.966 25 H 0.032 0.968 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.131 0.869 33 H 0.088 0.912 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.983 -16.393 3.622 17.822 hybrid contribution -0.321 0.822 0.493 1.011 sum 5.661 -15.571 4.114 17.071 Atomic orbital electron populations 1.69950 1.06086 1.26746 1.50763 1.25015 0.94831 0.99255 0.95272 0.86659 0.79600 0.83121 0.78651 1.20203 1.21303 1.20207 1.21160 0.92979 0.90899 1.50721 0.92675 1.19055 0.93925 0.91284 0.97114 1.22019 0.99666 0.92374 1.01359 1.22547 0.93091 0.90356 1.00994 1.59398 1.25943 1.04427 1.30550 1.22977 0.98767 0.91820 0.97700 1.23628 0.90267 1.03800 0.88119 1.86350 1.37083 1.44368 1.53618 1.18638 0.91089 0.93697 0.92324 1.20116 1.01219 0.97267 0.89526 1.98340 1.95622 1.59342 1.50557 1.20844 0.96483 0.94071 1.00096 1.20949 1.00854 0.99420 0.93468 1.21294 0.92291 0.97021 0.98599 1.18643 0.98877 0.98399 0.89029 0.92937 0.96610 0.96806 0.92067 0.92268 0.90061 0.94478 0.89083 0.88131 0.86859 0.91153 0.84613 0.84594 0.83568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.31 4.03 -26.73 -0.11 -2.42 16 11 C 0.05 0.90 4.60 -3.82 -0.02 0.88 16 12 N -0.49 -7.19 4.67 -170.83 -0.80 -7.99 16 13 C 0.02 0.18 6.02 -3.68 -0.02 0.16 16 14 C 0.02 0.22 7.06 37.38 0.26 0.48 16 15 O -0.30 -4.32 9.78 -20.31 -0.20 -4.52 16 16 C 0.09 1.38 6.47 -39.09 -0.25 1.13 16 17 C -0.05 -0.76 6.33 -39.33 -0.25 -1.01 16 18 Cl -0.07 -0.89 28.41 -51.86 -1.47 -2.36 16 19 C -0.10 -1.21 9.82 -39.56 -0.39 -1.60 16 20 C -0.13 -1.64 10.03 -39.64 -0.40 -2.04 16 21 C -0.07 -1.07 7.53 -39.30 -0.30 -1.37 16 22 C 0.05 0.74 5.06 -83.60 -0.42 0.31 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 1.21 5.11 -51.93 -0.27 0.94 16 27 H 0.06 1.17 8.11 -51.93 -0.42 0.74 16 28 H 0.08 1.27 7.88 -51.93 -0.41 0.86 16 29 H 0.04 0.64 7.06 -51.93 -0.37 0.27 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.10 0.97 7.84 -51.93 -0.41 0.56 16 32 H 0.11 0.95 8.14 -51.92 -0.42 0.53 16 33 H 0.07 0.86 6.91 -51.93 -0.36 0.50 16 34 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.15 2.19 6.34 -52.48 -0.33 1.86 16 LS Contribution 307.49 15.07 4.63 4.63 Total: -1.00 -30.62 307.49 -9.20 -39.82 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -4.64 Total: -1.84 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.44 Total: -18.19 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: -0.06 Total: -33.91 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.20 Total: -4.52 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.47 Total: -2.36 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.62 -9.20 -39.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532127617.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.628 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds