Wall clock time and date at job start Tue Mar 31 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.38194 * 126.45481 * 280.98449 * 3 2 1 5 5 N 1.34437 * 108.38671 * 179.76694 * 4 3 2 6 6 H 0.97010 * 125.40399 * 180.22357 * 5 4 3 7 7 C 1.37753 * 109.19252 * 0.38238 * 5 4 3 8 8 C 1.46734 * 125.85671 * 179.88593 * 7 5 4 9 9 O 1.21687 * 119.99783 * 179.68932 * 8 7 5 10 10 N 1.34775 * 119.99819 * 359.68476 * 8 7 5 11 11 C 1.38976 * 119.99946 * 185.55559 * 10 8 7 12 12 C 1.38702 * 120.28849 * 24.85322 * 11 10 8 13 13 C 1.38195 * 120.02708 * 180.30042 * 12 11 10 14 14 C 1.38887 * 120.62024 * 359.71959 * 13 12 11 15 15 C 1.36451 * 120.59037 * 359.97438 * 14 13 12 16 16 C 1.40748 * 119.94268 * 0.02562 * 15 14 13 17 17 C 1.41045 * 120.30177 * 180.02562 * 16 15 14 18 18 H 1.07990 * 120.00359 * 154.92748 * 17 16 15 19 19 C 1.39968 * 119.99840 * 334.92758 * 17 16 15 20 20 N 1.30852 * 119.99829 * 334.93278 * 19 17 16 21 21 Si 1.86794 * 119.99857 * 154.93410 * 19 17 16 22 22 H 1.48502 * 109.47025 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.47144 * 300.00125 * 21 19 17 24 24 H 1.48495 * 109.47235 * 59.99951 * 21 19 17 25 25 C 1.36460 * 108.29037 * 359.61349 * 7 5 4 26 26 H 1.07998 * 125.80494 * 0.03915 * 4 3 2 27 27 H 0.96998 * 119.99993 * 5.54961 * 10 8 7 28 28 H 1.07999 * 119.98610 * 0.02618 * 12 11 10 29 29 H 1.07998 * 119.68602 * 179.74380 * 13 12 11 30 30 H 1.08001 * 119.70256 * 180.02562 * 14 13 12 31 31 H 1.07991 * 120.02896 * 180.02562 * 15 14 13 32 32 H 0.97000 * 120.00299 * 354.86879 * 20 19 17 33 33 H 1.08003 * 126.48312 * 180.25026 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3892 -0.2108 1.0912 5 7 4.6673 -0.1359 0.6809 6 1 5.4468 -0.2497 1.2469 7 6 4.6942 0.1317 -0.6701 8 6 5.9000 0.2908 -1.4910 9 8 5.7995 0.5212 -2.6816 10 7 7.1189 0.1818 -0.9261 11 6 8.2585 0.4459 -1.6764 12 6 8.1909 1.2830 -2.7802 13 6 9.3263 1.5370 -3.5261 14 6 10.5435 0.9653 -3.1787 15 6 10.6400 0.1429 -2.0941 16 6 9.4990 -0.1323 -1.3174 17 6 9.5903 -0.9808 -0.1944 18 1 8.8788 -0.8871 0.6125 19 6 10.6032 -1.9444 -0.1259 20 7 11.1411 -2.4074 -1.2252 21 14 11.1868 -2.5695 1.5347 22 1 12.2592 -3.5772 1.3353 23 1 11.7168 -1.4345 2.3324 24 1 10.0489 -3.1931 2.2567 25 6 3.4072 0.2175 -1.1155 26 1 3.0602 -0.4075 2.1008 27 1 7.2006 -0.0808 0.0040 28 1 7.2498 1.7331 -3.0596 29 1 9.2665 2.1864 -4.3870 30 1 11.4215 1.1742 -3.7718 31 1 11.5911 -0.2964 -1.8320 32 1 10.7884 -2.1393 -2.0881 33 1 3.0901 0.4138 -2.1291 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000559251801.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:36 Heat of formation + Delta-G solvation = 54.651387 kcal Electronic energy + Delta-G solvation = -20195.986384 eV Core-core repulsion = 16994.050429 eV Total energy + Delta-G solvation = -3201.935955 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.67795 -39.46486 -37.40264 -36.45535 -34.19971 -33.97780 -31.65442 -30.14719 -29.46374 -28.35296 -25.29448 -23.44788 -22.96800 -21.42004 -20.72553 -20.19091 -18.80155 -18.05224 -16.77694 -16.31723 -15.83503 -15.33780 -14.85458 -14.32184 -14.21793 -14.09951 -13.89387 -13.43086 -13.32646 -13.12840 -12.95519 -12.74347 -12.52934 -12.10966 -11.99287 -11.53085 -11.25930 -10.82518 -10.56657 -10.44375 -9.83276 -9.62648 -9.30599 -9.27887 -9.07295 -8.55750 -7.73187 -7.45683 -7.08911 -4.57564 1.29347 1.65435 2.57518 2.60942 2.71527 2.79847 3.01683 3.13261 3.21744 3.46053 3.53297 3.68591 3.86538 4.12737 4.45273 4.67900 4.88645 5.07742 5.33993 5.50431 5.75685 6.11995 6.21359 6.24425 6.37815 6.42848 6.64938 6.81935 6.96130 6.98781 7.21712 7.38022 7.54240 7.58815 7.61097 7.78890 7.88241 8.07486 8.18403 8.48089 8.61383 8.74890 9.89786 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017645 B = 0.004716 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.504275 B = 5936.165890 C = 7318.501475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.296 3.704 3 C -0.138 4.138 4 C 0.090 3.910 5 N -0.522 5.522 6 H 0.427 0.573 7 C -0.031 4.031 8 C 0.566 3.434 9 O -0.521 6.521 10 N -0.630 5.630 11 C 0.007 3.993 12 C -0.080 4.080 13 C -0.237 4.237 14 C -0.091 4.091 15 C -0.209 4.209 16 C 0.092 3.908 17 C -0.528 4.528 18 H 0.069 0.931 19 C 0.041 3.959 20 N -0.791 5.791 21 Si 1.064 2.936 22 H -0.273 1.273 23 H -0.274 1.274 24 H -0.277 1.277 25 C -0.065 4.065 26 H 0.187 0.813 27 H 0.397 0.603 28 H 0.120 0.880 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.302 0.698 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.497 2.011 7.414 10.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.019 4.019 3 C -0.149 4.149 4 C -0.055 4.055 5 N -0.116 5.116 6 H 0.266 0.734 7 C -0.143 4.143 8 C 0.353 3.647 9 O -0.398 6.398 10 N -0.270 5.270 11 C -0.086 4.086 12 C -0.100 4.100 13 C -0.257 4.257 14 C -0.109 4.109 15 C -0.229 4.229 16 C 0.088 3.912 17 C -0.556 4.556 18 H 0.087 0.913 19 C -0.182 4.182 20 N -0.414 5.414 21 Si 0.887 3.113 22 H -0.197 1.197 23 H -0.199 1.199 24 H -0.203 1.203 25 C -0.092 4.092 26 H 0.204 0.796 27 H 0.231 0.769 28 H 0.137 0.863 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.011 1.139 7.278 10.170 hybrid contribution -0.227 0.766 -0.014 0.799 sum -7.238 1.905 7.264 10.430 Atomic orbital electron populations 1.81255 1.11853 1.11211 1.07668 1.24660 0.91440 0.92438 0.93382 1.15377 0.84932 1.19474 0.95101 1.22221 0.82359 1.01806 0.99108 1.41869 1.08308 1.52610 1.08837 0.73351 1.20334 0.95843 1.15140 0.83023 1.16990 0.81652 0.79237 0.86797 1.90799 1.85768 1.49358 1.13924 1.42702 1.04491 1.65721 1.14116 1.17522 0.85156 1.07460 0.98502 1.20837 0.98239 0.96194 0.94754 1.20294 0.93345 1.08626 1.03388 1.20435 0.96284 0.97372 0.96848 1.20752 0.97660 1.04946 0.99570 1.17392 0.89446 0.91388 0.92964 1.20187 1.14732 1.16703 1.04001 0.91274 1.26943 0.92766 0.93668 1.04803 1.70458 1.36578 1.33289 1.01083 0.83646 0.77431 0.77221 0.72978 1.19724 1.19947 1.20258 1.21015 0.89226 1.00157 0.98803 0.79638 0.76854 0.86276 0.88802 0.89062 0.87237 0.88409 0.82297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.22 18.54 41.84 0.78 -5.44 16 2 C 0.30 3.52 15.83 -22.47 -0.36 3.16 16 3 C -0.14 -1.44 5.97 -106.84 -0.64 -2.07 16 4 C 0.09 0.67 11.90 -16.43 -0.20 0.48 16 5 N -0.52 -4.58 5.92 -9.27 -0.05 -4.64 16 6 H 0.43 2.72 8.15 -40.82 -0.33 2.38 16 7 C -0.03 -0.41 6.99 -82.41 -0.58 -0.98 16 8 C 0.57 9.93 7.59 -12.83 -0.10 9.84 16 9 O -0.52 -10.94 14.02 5.20 0.07 -10.87 16 10 N -0.63 -11.53 5.14 -10.64 -0.05 -11.58 16 11 C 0.01 0.16 6.46 -83.21 -0.54 -0.38 16 12 C -0.08 -1.81 8.70 -39.43 -0.34 -2.16 16 13 C -0.24 -5.21 10.04 -39.36 -0.39 -5.60 16 14 C -0.09 -2.01 9.96 -39.99 -0.40 -2.41 16 15 C -0.21 -5.02 7.87 -39.28 -0.31 -5.33 16 16 C 0.09 2.21 5.33 -106.65 -0.57 1.64 16 17 C -0.53 -12.19 8.58 -37.87 -0.32 -12.52 16 18 H 0.07 1.43 6.70 -52.49 -0.35 1.08 16 19 C 0.04 0.94 4.95 -17.32 -0.09 0.86 16 20 N -0.79 -19.62 12.32 55.55 0.68 -18.94 16 21 Si 1.06 19.25 30.00 -169.99 -5.10 14.15 16 22 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 23 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 24 H -0.28 -4.65 7.11 56.52 0.40 -4.25 16 25 C -0.07 -0.80 10.54 -39.07 -0.41 -1.21 16 26 H 0.19 0.66 8.06 -52.49 -0.42 0.23 16 27 H 0.40 6.12 6.30 -40.82 -0.26 5.86 16 28 H 0.12 2.67 5.78 -52.49 -0.30 2.36 16 29 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.11 2.69 6.43 -52.49 -0.34 2.35 16 32 H 0.30 7.79 6.59 -40.82 -0.27 7.52 16 33 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 300.14 15.07 4.52 4.52 Total: -1.00 -29.94 300.14 -6.73 -36.67 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -2.34 Total: 12.83 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -5.24 Total: -16.70 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 1.35 Total: -40.60 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.07 Total: -10.87 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.10 Total: 14.15 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.94 -6.73 -36.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559251801.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.321 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds