Wall clock time and date at job start Tue Mar 31 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.38194 * 126.45481 * 280.98449 * 3 2 1 5 5 N 1.34437 * 108.38671 * 179.76694 * 4 3 2 6 6 H 0.97010 * 125.40399 * 180.22357 * 5 4 3 7 7 C 1.37753 * 109.19252 * 0.38238 * 5 4 3 8 8 C 1.46734 * 125.85671 * 179.88593 * 7 5 4 9 9 O 1.21687 * 119.99783 * 179.68932 * 8 7 5 10 10 N 1.34775 * 119.99819 * 359.68476 * 8 7 5 11 11 C 1.38976 * 119.99946 * 185.55559 * 10 8 7 12 12 C 1.38702 * 120.28849 * 24.85322 * 11 10 8 13 13 C 1.38195 * 120.02708 * 180.30042 * 12 11 10 14 14 C 1.38887 * 120.62024 * 359.71959 * 13 12 11 15 15 C 1.36451 * 120.59037 * 359.97438 * 14 13 12 16 16 C 1.40748 * 119.94268 * 0.02562 * 15 14 13 17 17 C 1.41045 * 120.30177 * 180.02562 * 16 15 14 18 18 H 1.07990 * 120.00359 * 154.92748 * 17 16 15 19 19 C 1.39968 * 119.99840 * 334.92758 * 17 16 15 20 20 N 1.30852 * 119.99829 * 334.93278 * 19 17 16 21 21 Si 1.86794 * 119.99857 * 154.93410 * 19 17 16 22 22 H 1.48502 * 109.47025 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.47144 * 300.00125 * 21 19 17 24 24 H 1.48495 * 109.47235 * 59.99951 * 21 19 17 25 25 C 1.36460 * 108.29037 * 359.61349 * 7 5 4 26 26 H 1.07998 * 125.80494 * 0.03915 * 4 3 2 27 27 H 0.96998 * 119.99993 * 5.54961 * 10 8 7 28 28 H 1.07999 * 119.98610 * 0.02618 * 12 11 10 29 29 H 1.07998 * 119.68602 * 179.74380 * 13 12 11 30 30 H 1.08001 * 119.70256 * 180.02562 * 14 13 12 31 31 H 1.07991 * 120.02896 * 180.02562 * 15 14 13 32 32 H 0.97000 * 120.00299 * 354.86879 * 20 19 17 33 33 H 1.08003 * 126.48312 * 180.25026 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3892 -0.2108 1.0912 5 7 4.6673 -0.1359 0.6809 6 1 5.4468 -0.2497 1.2469 7 6 4.6942 0.1317 -0.6701 8 6 5.9000 0.2908 -1.4910 9 8 5.7995 0.5212 -2.6816 10 7 7.1189 0.1818 -0.9261 11 6 8.2585 0.4459 -1.6764 12 6 8.1909 1.2830 -2.7802 13 6 9.3263 1.5370 -3.5261 14 6 10.5435 0.9653 -3.1787 15 6 10.6400 0.1429 -2.0941 16 6 9.4990 -0.1323 -1.3174 17 6 9.5903 -0.9808 -0.1944 18 1 8.8788 -0.8871 0.6125 19 6 10.6032 -1.9444 -0.1259 20 7 11.1411 -2.4074 -1.2252 21 14 11.1868 -2.5695 1.5347 22 1 12.2592 -3.5772 1.3353 23 1 11.7168 -1.4345 2.3324 24 1 10.0489 -3.1931 2.2567 25 6 3.4072 0.2175 -1.1155 26 1 3.0602 -0.4075 2.1008 27 1 7.2006 -0.0808 0.0040 28 1 7.2498 1.7331 -3.0596 29 1 9.2665 2.1864 -4.3870 30 1 11.4215 1.1742 -3.7718 31 1 11.5911 -0.2964 -1.8320 32 1 10.7884 -2.1393 -2.0881 33 1 3.0901 0.4138 -2.1291 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000559251801.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:35 Heat of formation + Delta-G solvation = 36.571997 kcal Electronic energy + Delta-G solvation = -20196.770365 eV Core-core repulsion = 16994.050429 eV Total energy + Delta-G solvation = -3202.719936 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.61470 -40.93736 -39.03907 -37.43517 -35.81251 -35.65430 -32.54887 -31.37948 -31.20557 -29.78798 -27.02989 -24.79450 -23.78202 -23.10829 -22.21946 -21.25076 -20.16012 -19.71247 -18.13257 -17.36870 -17.10601 -16.66916 -16.37281 -15.75762 -15.60365 -15.33398 -15.02768 -14.68239 -14.49947 -14.37691 -14.30144 -14.12129 -13.83745 -13.69732 -13.24919 -12.93916 -12.77094 -12.44283 -12.13392 -11.94951 -11.47744 -11.24987 -10.93222 -10.72850 -10.18448 -9.53916 -9.47004 -9.23630 -8.79175 -6.37113 0.27818 0.74067 0.91175 0.99869 1.56856 1.69079 1.69807 1.83044 1.98850 2.20244 2.27096 2.37931 2.66649 2.74430 3.18214 3.55708 3.80079 4.15759 4.18100 4.41754 4.42926 4.59019 4.70658 4.86000 4.94463 5.05624 5.27065 5.34215 5.47148 5.51699 5.69819 5.76753 5.90554 6.03189 6.11982 6.29767 6.34045 6.59351 6.64134 6.82088 6.93403 7.22396 8.07360 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017645 B = 0.004716 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.504275 B = 5936.165890 C = 7318.501475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.318 3.682 3 C -0.160 4.160 4 C 0.147 3.853 5 N -0.508 5.508 6 H 0.442 0.558 7 C -0.059 4.059 8 C 0.569 3.431 9 O -0.564 6.564 10 N -0.629 5.629 11 C 0.008 3.992 12 C -0.098 4.098 13 C -0.239 4.239 14 C -0.098 4.098 15 C -0.230 4.230 16 C 0.066 3.934 17 C -0.544 4.544 18 H 0.091 0.909 19 C 0.005 3.995 20 N -0.820 5.820 21 Si 1.116 2.884 22 H -0.284 1.284 23 H -0.263 1.263 24 H -0.249 1.249 25 C -0.060 4.060 26 H 0.241 0.759 27 H 0.410 0.590 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.283 0.717 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.530 1.774 10.318 12.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C 0.005 3.995 3 C -0.170 4.170 4 C 0.000 4.000 5 N -0.103 5.103 6 H 0.284 0.716 7 C -0.171 4.171 8 C 0.359 3.641 9 O -0.444 6.444 10 N -0.271 5.271 11 C -0.086 4.086 12 C -0.119 4.119 13 C -0.259 4.259 14 C -0.117 4.117 15 C -0.250 4.250 16 C 0.062 3.938 17 C -0.572 4.572 18 H 0.109 0.891 19 C -0.212 4.212 20 N -0.443 5.443 21 Si 0.933 3.067 22 H -0.209 1.209 23 H -0.187 1.187 24 H -0.172 1.172 25 C -0.087 4.087 26 H 0.257 0.743 27 H 0.247 0.753 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.053 0.912 10.202 13.029 hybrid contribution -0.016 0.899 -0.952 1.310 sum -8.069 1.811 9.250 12.408 Atomic orbital electron populations 1.81287 1.13065 1.13017 1.08932 1.24716 0.91440 0.91169 0.92214 1.15330 0.84247 1.21891 0.95557 1.23030 0.80751 0.96033 1.00152 1.41839 1.09599 1.51615 1.07254 0.71591 1.19516 0.93703 1.19055 0.84781 1.17518 0.82329 0.77498 0.86750 1.90764 1.86480 1.51083 1.16054 1.42635 1.03788 1.66113 1.14531 1.17673 0.86125 1.06327 0.98502 1.21026 0.98517 0.96877 0.95437 1.20610 0.93026 1.08433 1.03828 1.20668 0.97347 0.96963 0.96676 1.20795 0.97410 1.05966 1.00822 1.17716 0.90020 0.92322 0.93771 1.20509 1.15746 1.16593 1.04368 0.89115 1.28402 0.92356 0.93328 1.07108 1.70581 1.37725 1.35068 1.00964 0.83014 0.77597 0.76866 0.69206 1.20892 1.18720 1.17229 1.21069 0.89518 0.98916 0.99227 0.74286 0.75260 0.86301 0.86618 0.86860 0.88695 0.90423 0.83252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.94 18.54 19.00 0.35 -12.59 16 2 C 0.32 6.86 15.83 88.33 1.40 8.26 16 3 C -0.16 -2.83 5.97 -21.30 -0.13 -2.95 16 4 C 0.15 1.44 11.90 84.28 1.00 2.44 16 5 N -0.51 -6.88 5.92 -183.25 -1.08 -7.96 16 6 H 0.44 3.65 8.15 -92.70 -0.76 2.90 16 7 C -0.06 -1.44 6.99 40.02 0.28 -1.16 16 8 C 0.57 19.78 7.59 86.46 0.66 20.43 16 9 O -0.56 -24.14 14.02 -4.31 -0.06 -24.20 16 10 N -0.63 -22.67 5.14 -305.81 -1.57 -24.24 16 11 C 0.01 0.37 6.46 38.92 0.25 0.62 16 12 C -0.10 -4.51 8.70 22.37 0.19 -4.32 16 13 C -0.24 -10.58 10.04 22.42 0.22 -10.35 16 14 C -0.10 -4.41 9.96 22.01 0.22 -4.19 16 15 C -0.23 -11.34 7.87 22.47 0.18 -11.16 16 16 C 0.07 3.20 5.33 -21.18 -0.11 3.09 16 17 C -0.54 -24.94 8.58 23.38 0.20 -24.74 16 18 H 0.09 3.60 6.70 -2.92 -0.02 3.58 16 19 C 0.00 0.21 4.95 85.26 0.42 0.63 16 20 N -0.82 -41.66 12.32 21.83 0.27 -41.39 16 21 Si 1.12 37.41 30.00 68.60 2.06 39.47 16 22 H -0.28 -9.95 7.11 99.48 0.71 -9.24 16 23 H -0.26 -8.26 7.11 99.48 0.71 -7.56 16 24 H -0.25 -7.16 7.11 99.48 0.71 -6.46 16 25 C -0.06 -1.38 10.54 22.60 0.24 -1.14 16 26 H 0.24 -0.15 8.06 -2.91 -0.02 -0.18 16 27 H 0.41 12.00 6.30 -92.71 -0.58 11.41 16 28 H 0.12 5.43 5.78 -2.91 -0.02 5.41 16 29 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 30 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 31 H 0.09 4.87 6.43 -2.92 -0.02 4.85 16 32 H 0.28 15.28 6.59 -92.71 -0.61 14.66 16 33 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -68.53 300.14 5.01 -63.52 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.02 Total: 31.93 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 5.02 Total: -24.53 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -2.04 Total: -86.19 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.06 Total: -24.20 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.06 Total: 39.47 kcal Total: -68.53 5.01 -63.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559251801.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.096 kcal (2) G-P(sol) polarization free energy of solvation -68.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds