Wall clock time and date at job start Tue Mar 31 2020 05:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99800 * 2 1 4 4 H 1.48504 * 109.47350 * 269.99931 * 3 2 1 5 5 H 1.48499 * 109.47302 * 30.00335 * 3 2 1 6 6 H 1.48504 * 109.47235 * 149.99979 * 3 2 1 7 7 C 1.37874 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00065 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00117 * 179.97438 * 7 2 1 10 10 N 1.46893 * 109.46873 * 180.02562 * 9 7 2 11 11 C 1.46907 * 110.99985 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.59104 * 35.31888 * 11 10 9 13 13 C 1.52899 * 109.72930 * 155.71103 * 11 10 9 14 14 C 1.52158 * 110.77104 * 36.65642 * 13 11 10 15 15 C 1.51427 * 113.44864 * 67.41273 * 14 13 11 16 16 O 1.43112 * 110.98949 * 294.41249 * 15 14 13 17 17 C 1.36212 * 115.62635 * 86.88237 * 16 15 14 18 18 C 1.38849 * 119.83593 * 108.93443 * 17 16 15 19 19 C 1.38289 * 119.64775 * 182.05807 * 18 17 16 20 20 Cl 1.73593 * 119.91262 * 179.73578 * 19 18 17 21 21 C 1.38418 * 120.17760 * 359.49833 * 19 18 17 22 22 C 1.38358 * 120.08032 * 0.16437 * 21 19 18 23 23 C 1.37949 * 120.23120 * 290.03545 * 17 16 15 24 24 H 0.96997 * 120.00117 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46647 * 60.00026 * 9 7 2 26 26 H 1.08996 * 109.46898 * 300.00169 * 9 7 2 27 27 H 1.00900 * 111.00619 * 303.95380 * 10 9 7 28 28 H 1.09007 * 109.21199 * 156.98566 * 13 11 10 29 29 H 1.09001 * 109.21768 * 276.36283 * 13 11 10 30 30 H 1.08998 * 108.68319 * 188.43844 * 14 13 11 31 31 H 1.09001 * 108.68475 * 306.39058 * 14 13 11 32 32 H 1.09001 * 109.17145 * 54.80019 * 15 14 13 33 33 H 1.08999 * 109.16919 * 174.07606 * 15 14 13 34 34 H 1.08002 * 120.17306 * 1.77240 * 18 17 16 35 35 H 1.07995 * 119.95786 * 179.90590 * 21 19 18 36 36 H 1.07999 * 120.15935 * 179.69868 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5789 0.0001 11 6 5.4698 -2.6181 -0.0011 12 1 5.8580 -1.7901 0.5919 13 6 5.9512 -3.9431 0.5910 14 6 5.0280 -5.0825 0.1854 15 6 5.0746 -5.3980 -1.2949 16 8 4.5657 -4.3064 -2.0679 17 6 5.4722 -3.3442 -2.3965 18 6 5.9026 -3.2206 -3.7108 19 6 6.8548 -2.2706 -4.0323 20 17 7.4029 -2.1148 -5.6721 21 6 7.3683 -1.4404 -3.0511 22 6 6.9328 -1.5605 -1.7433 23 6 5.9804 -2.5077 -1.4244 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6795 0.8895 26 1 3.8746 -0.6807 -0.8905 27 1 3.6261 -3.0951 0.7817 28 1 6.9586 -4.1520 0.2308 29 1 5.9679 -3.8652 1.6781 30 1 5.3107 -5.9760 0.7421 31 1 4.0057 -4.8160 0.4537 32 1 6.1064 -5.5932 -1.5870 33 1 4.4730 -6.2856 -1.4908 34 1 5.4994 -3.8661 -4.4771 35 1 8.1128 -0.7007 -3.3059 36 1 7.3362 -0.9166 -0.9758 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562990315.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:10 Heat of formation + Delta-G solvation = -12.839437 kcal Electronic energy + Delta-G solvation = -20214.671780 eV Core-core repulsion = 17110.916697 eV Total energy + Delta-G solvation = -3103.755083 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.45082 -37.62306 -36.42421 -36.10924 -33.33985 -32.02560 -30.85305 -30.21739 -27.62786 -26.12507 -24.29455 -22.70943 -21.34773 -21.08985 -19.79712 -17.71161 -16.77412 -16.53556 -15.63298 -15.48733 -14.97040 -14.71310 -14.18463 -13.96250 -13.76517 -13.40510 -13.15386 -13.03255 -12.76734 -12.47081 -12.13312 -11.73364 -11.58912 -11.38096 -10.95228 -10.88514 -10.66564 -10.59406 -10.44361 -10.39717 -9.81831 -9.74280 -9.24706 -8.72000 -8.56069 -8.25397 -7.46567 -6.03093 -4.00253 1.22904 1.31957 2.13137 3.30425 3.37144 3.38560 3.51257 4.07943 4.44066 4.72415 4.80414 4.94350 5.03703 5.12318 5.16332 5.18181 5.30313 5.43915 5.46931 5.57472 5.66926 5.79055 5.83362 5.98564 6.02820 6.09051 6.22687 6.33122 6.47652 6.62020 6.68440 6.82380 7.02211 7.63204 7.77177 7.90107 8.32283 8.67240 9.05816 9.59189 11.10317 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014409 B = 0.006322 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.791932 B = 4428.119926 C = 5505.750574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.510 4.510 8 H 0.080 0.920 9 C 0.166 3.834 10 N -0.657 5.657 11 C 0.121 3.879 12 H 0.048 0.952 13 C -0.118 4.118 14 C -0.150 4.150 15 C 0.075 3.925 16 O -0.296 6.296 17 C 0.150 3.850 18 C -0.136 4.136 19 C -0.024 4.024 20 Cl -0.078 7.078 21 C -0.127 4.127 22 C -0.092 4.092 23 C -0.091 4.091 24 H 0.263 0.737 25 H -0.018 1.018 26 H 0.020 0.980 27 H 0.338 0.662 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.094 0.906 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.298 -8.493 -3.393 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.549 4.549 8 H 0.098 0.902 9 C 0.038 3.962 10 N -0.289 5.289 11 C 0.010 3.990 12 H 0.066 0.934 13 C -0.156 4.156 14 C -0.188 4.188 15 C 0.000 4.000 16 O -0.212 6.212 17 C 0.105 3.895 18 C -0.155 4.155 19 C -0.050 4.050 20 Cl -0.049 7.049 21 C -0.145 4.145 22 C -0.111 4.111 23 C -0.093 4.093 24 H 0.073 0.927 25 H 0.000 1.000 26 H 0.038 0.962 27 H 0.159 0.841 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 16.915 -8.448 -4.239 19.377 hybrid contribution 0.729 1.422 0.746 1.763 sum 17.645 -7.026 -3.494 19.311 Atomic orbital electron populations 1.69896 1.06114 1.26770 1.51206 1.24884 0.94713 0.98821 0.94849 0.86866 0.80215 0.84078 0.78614 1.20161 1.21252 1.19353 1.21025 0.88855 0.94754 1.50229 0.90241 1.20031 0.96721 0.84972 0.94484 1.60556 1.02418 1.16655 1.49287 1.20554 0.91662 0.96409 0.90359 0.93425 1.21528 0.99124 0.94488 1.00424 1.21609 1.02687 0.97941 0.96587 1.22371 0.98605 0.88254 0.90775 1.86434 1.32310 1.31286 1.71127 1.18124 0.89445 0.91130 0.90788 1.21119 0.97130 1.00153 0.97078 1.20605 0.99462 0.99475 0.85508 1.98349 1.89029 1.97400 1.20168 1.20950 1.01788 0.99685 0.92105 1.20896 0.96966 0.97493 0.95736 1.20522 0.95980 0.95657 0.97098 0.92715 1.00050 0.96159 0.84148 0.91914 0.91344 0.91546 0.89234 0.93564 0.88789 0.84514 0.85134 0.85072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 22.00 27.47 -169.99 -4.67 17.33 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.51 -14.72 9.87 -34.44 -0.34 -15.06 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 9 C 0.17 4.04 4.31 -4.98 -0.02 4.01 16 10 N -0.66 -13.19 4.43 -108.79 -0.48 -13.68 16 11 C 0.12 1.95 2.65 -68.46 -0.18 1.77 16 12 H 0.05 0.77 7.60 -51.93 -0.39 0.38 16 13 C -0.12 -1.47 5.36 -27.21 -0.15 -1.61 16 14 C -0.15 -1.81 5.33 -27.96 -0.15 -1.96 16 15 C 0.07 0.94 6.48 36.36 0.24 1.17 16 16 O -0.30 -5.02 9.26 -20.42 -0.19 -5.21 16 17 C 0.15 2.49 5.47 -39.46 -0.22 2.27 16 18 C -0.14 -2.04 9.79 -39.34 -0.38 -2.43 16 19 C -0.02 -0.33 6.32 -39.50 -0.25 -0.58 16 20 Cl -0.08 -0.97 28.95 -51.86 -1.50 -2.47 16 21 C -0.13 -1.69 9.83 -39.47 -0.39 -2.08 16 22 C -0.09 -1.31 9.69 -39.60 -0.38 -1.69 16 23 C -0.09 -1.47 4.58 -104.34 -0.48 -1.94 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 25 H -0.02 -0.44 7.11 -51.93 -0.37 -0.81 16 26 H 0.02 0.52 7.44 -51.93 -0.39 0.14 16 27 H 0.34 6.50 6.87 -39.29 -0.27 6.23 16 28 H 0.06 0.71 7.90 -51.92 -0.41 0.29 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.26 6.10 -51.93 -0.32 0.94 16 32 H 0.05 0.51 7.89 -51.93 -0.41 0.10 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.13 1.59 7.98 -52.49 -0.42 1.17 16 LS Contribution 305.75 15.07 4.61 4.61 Total: -1.00 -31.82 305.75 -8.94 -40.76 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -4.68 Total: 2.12 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -2.80 Total: -16.19 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.29 Total: -40.93 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.19 Total: -5.21 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.82 -8.94 -40.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562990315.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.918 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds