Wall clock time and date at job start Tue Mar 31 2020 05:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99800 * 2 1 4 4 H 1.48504 * 109.47350 * 269.99931 * 3 2 1 5 5 H 1.48499 * 109.47302 * 30.00335 * 3 2 1 6 6 H 1.48504 * 109.47235 * 149.99979 * 3 2 1 7 7 C 1.37874 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00065 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00117 * 179.97438 * 7 2 1 10 10 N 1.46893 * 109.46873 * 180.02562 * 9 7 2 11 11 C 1.46907 * 110.99985 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.59104 * 35.31888 * 11 10 9 13 13 C 1.52899 * 109.72930 * 155.71103 * 11 10 9 14 14 C 1.52158 * 110.77104 * 36.65642 * 13 11 10 15 15 C 1.51427 * 113.44864 * 67.41273 * 14 13 11 16 16 O 1.43112 * 110.98949 * 294.41249 * 15 14 13 17 17 C 1.36212 * 115.62635 * 86.88237 * 16 15 14 18 18 C 1.38849 * 119.83593 * 108.93443 * 17 16 15 19 19 C 1.38289 * 119.64775 * 182.05807 * 18 17 16 20 20 Cl 1.73593 * 119.91262 * 179.73578 * 19 18 17 21 21 C 1.38418 * 120.17760 * 359.49833 * 19 18 17 22 22 C 1.38358 * 120.08032 * 0.16437 * 21 19 18 23 23 C 1.37949 * 120.23120 * 290.03545 * 17 16 15 24 24 H 0.96997 * 120.00117 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46647 * 60.00026 * 9 7 2 26 26 H 1.08996 * 109.46898 * 300.00169 * 9 7 2 27 27 H 1.00900 * 111.00619 * 303.95380 * 10 9 7 28 28 H 1.09007 * 109.21199 * 156.98566 * 13 11 10 29 29 H 1.09001 * 109.21768 * 276.36283 * 13 11 10 30 30 H 1.08998 * 108.68319 * 188.43844 * 14 13 11 31 31 H 1.09001 * 108.68475 * 306.39058 * 14 13 11 32 32 H 1.09001 * 109.17145 * 54.80019 * 15 14 13 33 33 H 1.08999 * 109.16919 * 174.07606 * 15 14 13 34 34 H 1.08002 * 120.17306 * 1.77240 * 18 17 16 35 35 H 1.07995 * 119.95786 * 179.90590 * 21 19 18 36 36 H 1.07999 * 120.15935 * 179.69868 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5789 0.0001 11 6 5.4698 -2.6181 -0.0011 12 1 5.8580 -1.7901 0.5919 13 6 5.9512 -3.9431 0.5910 14 6 5.0280 -5.0825 0.1854 15 6 5.0746 -5.3980 -1.2949 16 8 4.5657 -4.3064 -2.0679 17 6 5.4722 -3.3442 -2.3965 18 6 5.9026 -3.2206 -3.7108 19 6 6.8548 -2.2706 -4.0323 20 17 7.4029 -2.1148 -5.6721 21 6 7.3683 -1.4404 -3.0511 22 6 6.9328 -1.5605 -1.7433 23 6 5.9804 -2.5077 -1.4244 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6795 0.8895 26 1 3.8746 -0.6807 -0.8905 27 1 3.6261 -3.0951 0.7817 28 1 6.9586 -4.1520 0.2308 29 1 5.9679 -3.8652 1.6781 30 1 5.3107 -5.9760 0.7421 31 1 4.0057 -4.8160 0.4537 32 1 6.1064 -5.5932 -1.5870 33 1 4.4730 -6.2856 -1.4908 34 1 5.4994 -3.8661 -4.4771 35 1 8.1128 -0.7007 -3.3059 36 1 7.3362 -0.9166 -0.9758 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562990315.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:10 Heat of formation + Delta-G solvation = -32.785342 kcal Electronic energy + Delta-G solvation = -20215.536699 eV Core-core repulsion = 17110.916697 eV Total energy + Delta-G solvation = -3104.620002 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.57724 -38.69719 -37.73939 -37.19803 -35.14943 -33.64569 -32.13981 -31.37623 -29.15977 -27.57548 -25.46952 -23.82774 -23.29103 -22.14312 -20.98790 -19.02106 -18.70368 -17.66400 -16.96240 -16.73822 -16.24466 -16.01465 -15.77236 -15.27094 -15.02113 -14.62560 -14.56851 -14.33434 -14.22435 -13.85980 -13.43242 -13.29584 -12.78174 -12.61997 -12.48661 -12.29165 -11.98038 -11.93600 -11.72711 -11.63846 -11.55274 -11.29866 -10.83528 -10.80305 -9.81722 -9.36598 -9.05445 -8.29797 -6.32965 0.11551 0.22969 1.07956 1.32029 1.33797 1.43932 2.32689 2.43371 2.98924 3.04484 3.46133 3.73939 3.87255 4.01362 4.05239 4.10368 4.14852 4.38261 4.47226 4.52616 4.60113 4.70556 4.77220 4.85732 4.98107 5.04713 5.06437 5.13902 5.16707 5.25763 5.45390 5.49226 5.57922 5.62983 6.00074 6.60204 6.65837 6.70674 6.80960 7.31677 8.87140 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014409 B = 0.006322 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.791932 B = 4428.119926 C = 5505.750574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.946 3.054 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.247 1.247 7 C -0.520 4.520 8 H 0.036 0.964 9 C 0.181 3.819 10 N -0.664 5.664 11 C 0.118 3.882 12 H 0.051 0.949 13 C -0.112 4.112 14 C -0.148 4.148 15 C 0.067 3.933 16 O -0.328 6.328 17 C 0.132 3.868 18 C -0.149 4.149 19 C -0.027 4.027 20 Cl -0.065 7.065 21 C -0.124 4.124 22 C -0.093 4.093 23 C -0.112 4.112 24 H 0.266 0.734 25 H -0.013 1.013 26 H 0.011 0.989 27 H 0.340 0.660 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.140 0.860 35 H 0.157 0.843 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.119 -7.867 -3.206 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.770 3.230 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.171 1.171 7 C -0.558 4.558 8 H 0.055 0.945 9 C 0.053 3.947 10 N -0.297 5.297 11 C 0.008 3.992 12 H 0.069 0.931 13 C -0.149 4.149 14 C -0.186 4.186 15 C -0.007 4.007 16 O -0.245 6.245 17 C 0.087 3.913 18 C -0.168 4.168 19 C -0.054 4.054 20 Cl -0.036 7.036 21 C -0.143 4.143 22 C -0.112 4.112 23 C -0.114 4.114 24 H 0.075 0.925 25 H 0.004 0.996 26 H 0.029 0.971 27 H 0.160 0.840 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.158 0.842 35 H 0.175 0.825 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 19.763 -7.850 -4.048 21.646 hybrid contribution -0.168 1.103 0.627 1.280 sum 19.594 -6.746 -3.421 21.004 Atomic orbital electron populations 1.70054 1.08107 1.28053 1.52678 1.25845 0.95598 1.03135 0.94375 0.85727 0.79557 0.78755 0.78967 1.19746 1.20463 1.17101 1.21313 0.91444 0.93251 1.49790 0.94533 1.19689 0.93546 0.87536 0.93952 1.60403 1.05550 1.14009 1.49714 1.20685 0.88717 0.98685 0.91119 0.93089 1.21518 0.99796 0.92477 1.01121 1.21595 1.01168 0.99210 0.96614 1.22630 0.99779 0.87546 0.90724 1.86377 1.33720 1.32377 1.72029 1.18365 0.89814 0.91588 0.91536 1.21234 0.97799 1.00902 0.96833 1.20750 0.99055 0.99158 0.86424 1.98353 1.88776 1.97312 1.19181 1.21257 1.01782 0.99656 0.91562 1.21187 0.96303 0.96981 0.96693 1.20637 0.97171 0.96672 0.96904 0.92470 0.99562 0.97100 0.83961 0.90089 0.89863 0.88372 0.91823 0.91920 0.87443 0.84172 0.82549 0.82923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.52 13.96 21.45 0.30 -60.22 16 2 C 0.01 0.46 5.47 84.65 0.46 0.92 16 3 Si 0.95 45.17 27.47 68.60 1.88 47.05 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 7 C -0.52 -30.78 9.87 25.60 0.25 -30.53 16 8 H 0.04 2.41 8.06 -2.91 -0.02 2.38 16 9 C 0.18 8.80 4.31 85.56 0.37 9.17 16 10 N -0.66 -26.70 4.43 -498.11 -2.21 -28.90 16 11 C 0.12 3.63 2.65 44.43 0.12 3.75 16 12 H 0.05 1.54 7.60 -2.39 -0.02 1.52 16 13 C -0.11 -2.52 5.36 30.28 0.16 -2.35 16 14 C -0.15 -3.34 5.33 29.80 0.16 -3.18 16 15 C 0.07 1.62 6.48 71.47 0.46 2.08 16 16 O -0.33 -11.19 9.26 -95.97 -0.89 -12.08 16 17 C 0.13 4.29 5.47 22.35 0.12 4.41 16 18 C -0.15 -4.37 9.79 22.43 0.22 -4.15 16 19 C -0.03 -0.71 6.32 22.32 0.14 -0.57 16 20 Cl -0.07 -1.50 28.95 -2.72 -0.08 -1.58 16 21 C -0.12 -2.98 9.83 22.34 0.22 -2.76 16 22 C -0.09 -2.41 9.69 22.26 0.22 -2.19 16 23 C -0.11 -3.45 4.58 -19.68 -0.09 -3.54 16 24 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 25 H -0.01 -0.62 7.11 -2.39 -0.02 -0.64 16 26 H 0.01 0.55 7.44 -2.39 -0.02 0.53 16 27 H 0.34 13.26 6.87 -89.69 -0.62 12.65 16 28 H 0.08 1.57 7.90 -2.38 -0.02 1.55 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.78 6.10 -2.39 -0.01 1.77 16 32 H 0.06 1.28 7.89 -2.39 -0.02 1.26 16 33 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 35 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.15 3.19 7.98 -2.91 -0.02 3.17 16 Total: -1.00 -70.14 305.75 2.25 -67.89 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.42 Total: 16.80 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 2.81 Total: -28.96 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -1.91 Total: -89.13 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.89 Total: -12.08 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.05 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal Total: -70.14 2.25 -67.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562990315.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.104 kcal (2) G-P(sol) polarization free energy of solvation -70.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds