Wall clock time and date at job start Tue Mar 31 2020 05:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34671 * 117.00416 * 2 1 4 4 O 1.21437 * 119.99486 * 0.02562 * 3 2 1 5 5 C 1.48066 * 120.00295 * 180.02562 * 3 2 1 6 6 C 1.39346 * 119.72649 * 180.02562 * 5 3 2 7 7 C 1.38593 * 119.05599 * 179.97438 * 6 5 3 8 8 C 1.38619 * 118.48959 * 359.73676 * 7 6 5 9 9 C 1.38586 * 119.35707 * 0.52066 * 8 7 6 10 10 C 1.50705 * 119.54553 * 179.73573 * 9 8 7 11 11 S 1.81405 * 109.46754 * 269.73239 * 10 9 8 12 12 C 1.81399 * 102.99706 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47162 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46925 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00196 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47474 * 90.00322 * 18 16 14 20 20 H 1.48507 * 109.46754 * 210.00056 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99887 * 18 16 14 22 22 N 1.31502 * 120.90722 * 359.46508 * 9 8 7 23 23 H 1.09000 * 109.47179 * 299.99752 * 1 2 3 24 24 H 1.08996 * 109.47131 * 59.99993 * 1 2 3 25 25 H 1.09007 * 109.47080 * 179.97438 * 1 2 3 26 26 H 1.08005 * 120.47462 * 359.95253 * 6 5 3 27 27 H 1.08004 * 120.75430 * 180.02562 * 7 6 5 28 28 H 1.07998 * 120.32567 * 180.26485 * 8 7 6 29 29 H 1.09000 * 109.47022 * 149.73512 * 10 9 8 30 30 H 1.08998 * 109.46894 * 29.73067 * 10 9 8 31 31 H 1.09004 * 109.47089 * 299.99939 * 12 11 10 32 32 H 1.09004 * 109.47568 * 59.99949 * 12 11 10 33 33 H 1.09000 * 109.46497 * 299.99702 * 13 12 11 34 34 H 1.08996 * 109.46876 * 60.00092 * 13 12 11 35 35 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.1999 0.0000 4 8 1.4021 2.2183 0.0005 5 6 3.5421 1.2773 -0.0006 6 6 4.1688 2.5219 0.0000 7 6 5.5536 2.5782 0.0000 8 6 6.2638 1.3878 0.0050 9 6 5.5746 0.1855 -0.0011 10 6 6.3424 -1.1113 -0.0017 11 16 6.6504 -1.6308 -1.7123 12 6 7.5681 -3.1822 -1.5086 13 6 7.9095 -3.7573 -2.8847 14 6 8.6724 -5.0459 -2.7154 15 1 8.8922 -5.4173 -1.7253 16 6 9.0899 -5.7506 -3.8245 17 7 8.8227 -5.2980 -5.0301 18 14 10.0349 -7.3482 -3.6147 19 1 9.0804 -8.4845 -3.5597 20 1 10.9576 -7.5320 -4.7637 21 1 10.8181 -7.2981 -2.3540 22 7 4.2598 0.1606 -0.0011 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.5838 3.4298 0.0000 27 1 6.0677 3.5280 0.0008 28 1 7.3437 1.3971 0.0095 29 1 5.7617 -1.8776 0.5118 30 1 7.2934 -0.9707 0.5121 31 1 8.4884 -2.9902 -0.9569 32 1 6.9564 -3.8966 -0.9574 33 1 6.9894 -3.9492 -3.4366 34 1 8.5214 -3.0428 -3.4353 35 1 9.1167 -5.7937 -5.8103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584832922.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:17 Heat of formation + Delta-G solvation = -59.209959 kcal Electronic energy + Delta-G solvation = -18185.934185 eV Core-core repulsion = 15082.212031 eV Total energy + Delta-G solvation = -3103.722153 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.06942 -39.86752 -36.71565 -33.69554 -33.33900 -32.89723 -30.87577 -28.50761 -27.82749 -25.25983 -24.99756 -22.71572 -21.50220 -20.91237 -18.48290 -17.36300 -16.64489 -16.53784 -16.49375 -16.16720 -15.71295 -14.87629 -14.50232 -14.32643 -13.98092 -13.81363 -13.55611 -13.35002 -12.90990 -12.74394 -12.43594 -12.25300 -11.93699 -11.52536 -11.07744 -11.03185 -11.01271 -10.63960 -10.25464 -10.20716 -9.86495 -9.79902 -9.64777 -9.14297 -9.05681 -8.42739 -7.17176 -6.06566 -4.11305 0.22336 0.80743 1.97464 2.32062 2.37366 3.15539 3.29012 3.35474 3.38287 3.61123 3.74689 4.33188 4.41419 4.49273 4.64374 4.69657 4.88203 4.96504 5.05487 5.16385 5.25557 5.29071 5.31210 5.61165 5.69379 5.76364 5.97832 6.03317 6.15929 6.22499 6.70987 7.27720 7.55735 7.64207 7.65908 7.89557 8.26365 8.93707 9.52656 11.04227 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025836 B = 0.002981 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.517260 B = 9389.674067 C =10087.229045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.330 6.330 3 C 0.528 3.472 4 O -0.503 6.503 5 C 0.090 3.910 6 C -0.109 4.109 7 C -0.081 4.081 8 C -0.121 4.121 9 C 0.152 3.848 10 C -0.050 4.050 11 S -0.263 6.263 12 C -0.060 4.060 13 C 0.037 3.963 14 C -0.521 4.521 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.897 3.103 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 N -0.422 5.422 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.105 0.895 26 H 0.150 0.850 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.027 0.973 34 H 0.026 0.974 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.186 15.415 12.710 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.245 6.245 3 C 0.371 3.629 4 O -0.391 6.391 5 C -0.047 4.047 6 C -0.130 4.130 7 C -0.107 4.107 8 C -0.142 4.142 9 C 0.011 3.989 10 C -0.198 4.198 11 S -0.034 6.034 12 C -0.208 4.208 13 C -0.001 4.001 14 C -0.561 4.561 15 H 0.076 0.924 16 C -0.143 4.143 17 N -0.529 5.529 18 Si 0.725 3.275 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 N -0.134 5.134 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.124 0.876 26 H 0.168 0.832 27 H 0.167 0.833 28 H 0.166 0.834 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.181 15.364 11.598 22.262 hybrid contribution 1.079 -0.671 1.079 1.667 sum -10.102 14.693 12.677 21.878 Atomic orbital electron populations 1.23368 0.75986 1.04168 1.02499 1.86718 1.23257 1.31499 1.83013 1.20811 0.87866 0.81807 0.72454 1.90839 1.65928 1.36215 1.46094 1.19941 0.90736 0.90032 1.03963 1.22072 0.95492 0.98106 0.97341 1.21603 0.93228 0.99228 0.96620 1.22339 1.02396 0.92405 0.97090 1.20575 0.88822 0.94279 0.95247 1.22169 1.01619 0.96029 0.99943 1.87196 1.75298 1.33481 1.07451 1.23750 0.99229 0.92029 1.05804 1.18906 0.97514 0.95496 0.88205 1.21090 1.35871 1.06370 0.92795 0.92401 1.25016 0.96090 0.97981 0.95183 1.69972 1.46215 1.39082 0.97623 0.86517 0.79772 0.83508 0.77745 1.20537 1.21116 1.19812 1.67399 1.07672 1.30158 1.08174 0.91818 0.91690 0.87643 0.83204 0.83331 0.83385 0.88175 0.88445 0.91197 0.91107 0.95463 0.95528 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.33 -4.27 10.38 -40.41 -0.42 -4.69 16 3 C 0.53 7.04 7.95 34.76 0.28 7.32 16 4 O -0.50 -7.01 16.11 -19.22 -0.31 -7.32 16 5 C 0.09 1.18 6.75 -83.03 -0.56 0.62 16 6 C -0.11 -1.11 9.63 -39.04 -0.38 -1.49 16 7 C -0.08 -0.69 10.17 -39.31 -0.40 -1.09 16 8 C -0.12 -1.22 9.75 -39.31 -0.38 -1.60 16 9 C 0.15 1.99 6.04 -82.60 -0.50 1.49 16 10 C -0.05 -0.68 6.22 36.01 0.22 -0.45 16 11 S -0.26 -4.80 21.72 -107.50 -2.33 -7.14 16 12 C -0.06 -1.23 5.88 37.16 0.22 -1.01 16 13 C 0.04 0.97 4.98 -27.88 -0.14 0.83 16 14 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 18 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 N -0.42 -6.14 10.03 -6.07 -0.06 -6.20 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.15 1.27 7.64 -52.48 -0.40 0.86 16 27 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 28 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.10 1.37 8.14 -51.92 -0.42 0.94 16 30 H 0.10 1.09 8.07 -51.92 -0.42 0.67 16 31 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 32 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 327.90 15.07 4.94 4.94 Total: -1.00 -32.86 327.90 -8.04 -40.90 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -4.59 Total: -3.70 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -0.98 Total: -7.21 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.68 Total: -32.03 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.73 Total: -12.01 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -4.80 SS G_CDS: -2.33 Total: -7.14 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.86 -8.04 -40.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584832922.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.312 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds