Wall clock time and date at job start Tue Mar 31 2020 05:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34671 * 117.00416 * 2 1 4 4 O 1.21437 * 119.99486 * 0.02562 * 3 2 1 5 5 C 1.48066 * 120.00295 * 180.02562 * 3 2 1 6 6 C 1.39346 * 119.72649 * 180.02562 * 5 3 2 7 7 C 1.38593 * 119.05599 * 179.97438 * 6 5 3 8 8 C 1.38619 * 118.48959 * 359.73676 * 7 6 5 9 9 C 1.38586 * 119.35707 * 0.52066 * 8 7 6 10 10 C 1.50705 * 119.54553 * 179.73573 * 9 8 7 11 11 S 1.81405 * 109.46754 * 269.73239 * 10 9 8 12 12 C 1.81399 * 102.99706 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47162 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46925 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00196 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47474 * 90.00322 * 18 16 14 20 20 H 1.48507 * 109.46754 * 210.00056 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99887 * 18 16 14 22 22 N 1.31502 * 120.90722 * 359.46508 * 9 8 7 23 23 H 1.09000 * 109.47179 * 299.99752 * 1 2 3 24 24 H 1.08996 * 109.47131 * 59.99993 * 1 2 3 25 25 H 1.09007 * 109.47080 * 179.97438 * 1 2 3 26 26 H 1.08005 * 120.47462 * 359.95253 * 6 5 3 27 27 H 1.08004 * 120.75430 * 180.02562 * 7 6 5 28 28 H 1.07998 * 120.32567 * 180.26485 * 8 7 6 29 29 H 1.09000 * 109.47022 * 149.73512 * 10 9 8 30 30 H 1.08998 * 109.46894 * 29.73067 * 10 9 8 31 31 H 1.09004 * 109.47089 * 299.99939 * 12 11 10 32 32 H 1.09004 * 109.47568 * 59.99949 * 12 11 10 33 33 H 1.09000 * 109.46497 * 299.99702 * 13 12 11 34 34 H 1.08996 * 109.46876 * 60.00092 * 13 12 11 35 35 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.1999 0.0000 4 8 1.4021 2.2183 0.0005 5 6 3.5421 1.2773 -0.0006 6 6 4.1688 2.5219 0.0000 7 6 5.5536 2.5782 0.0000 8 6 6.2638 1.3878 0.0050 9 6 5.5746 0.1855 -0.0011 10 6 6.3424 -1.1113 -0.0017 11 16 6.6504 -1.6308 -1.7123 12 6 7.5681 -3.1822 -1.5086 13 6 7.9095 -3.7573 -2.8847 14 6 8.6724 -5.0459 -2.7154 15 1 8.8922 -5.4173 -1.7253 16 6 9.0899 -5.7506 -3.8245 17 7 8.8227 -5.2980 -5.0301 18 14 10.0349 -7.3482 -3.6147 19 1 9.0804 -8.4845 -3.5597 20 1 10.9576 -7.5320 -4.7637 21 1 10.8181 -7.2981 -2.3540 22 7 4.2598 0.1606 -0.0011 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.5838 3.4298 0.0000 27 1 6.0677 3.5280 0.0008 28 1 7.3437 1.3971 0.0095 29 1 5.7617 -1.8776 0.5118 30 1 7.2934 -0.9707 0.5121 31 1 8.4884 -2.9902 -0.9569 32 1 6.9564 -3.8966 -0.9574 33 1 6.9894 -3.9492 -3.4366 34 1 8.5214 -3.0428 -3.4353 35 1 9.1167 -5.7937 -5.8103 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584832922.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:16 Heat of formation + Delta-G solvation = -78.772920 kcal Electronic energy + Delta-G solvation = -18186.782498 eV Core-core repulsion = 15082.212031 eV Total energy + Delta-G solvation = -3104.570467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.97466 -40.77243 -37.66935 -35.75822 -34.24074 -33.73449 -32.88713 -29.43884 -28.65983 -27.27074 -25.83755 -23.75855 -22.93071 -22.20429 -19.39186 -18.65639 -18.29798 -17.57753 -17.39073 -17.03490 -16.95528 -16.50356 -15.83942 -15.61206 -15.35207 -14.74257 -14.67424 -14.37425 -14.16088 -13.85546 -13.73581 -13.41638 -13.16393 -12.95993 -12.90289 -12.42846 -12.14252 -12.06002 -11.87826 -11.68321 -11.42381 -11.03095 -10.89623 -10.67246 -10.59344 -10.13925 -8.62752 -8.21693 -6.35184 -0.64371 -0.09626 0.87136 1.27940 1.42845 1.44229 1.51768 1.55411 1.74158 2.41930 2.72433 2.83936 3.11826 3.45810 3.73899 3.84305 3.96438 4.21124 4.25824 4.26180 4.29291 4.30540 4.40857 4.45237 4.64342 4.65886 4.90314 4.95240 4.99779 5.14477 5.40408 5.45084 5.51717 5.75571 6.12405 6.35069 6.75647 6.79594 7.34418 8.90146 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025836 B = 0.002981 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.517260 B = 9389.674067 C =10087.229045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.525 3.475 4 O -0.518 6.518 5 C 0.062 3.938 6 C -0.101 4.101 7 C -0.067 4.067 8 C -0.113 4.113 9 C 0.126 3.874 10 C -0.029 4.029 11 S -0.300 6.300 12 C -0.048 4.048 13 C 0.044 3.956 14 C -0.541 4.541 15 H 0.069 0.931 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.972 3.028 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.258 1.258 22 N -0.454 5.454 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.128 0.872 26 H 0.167 0.833 27 H 0.193 0.807 28 H 0.176 0.824 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.086 0.914 32 H 0.075 0.925 33 H -0.008 1.008 34 H -0.002 1.002 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.205 16.289 14.439 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.265 6.265 3 C 0.369 3.631 4 O -0.407 6.407 5 C -0.074 4.074 6 C -0.122 4.122 7 C -0.093 4.093 8 C -0.134 4.134 9 C -0.016 4.016 10 C -0.177 4.177 11 S -0.072 6.072 12 C -0.196 4.196 13 C 0.005 3.995 14 C -0.580 4.580 15 H 0.088 0.912 16 C -0.198 4.198 17 N -0.572 5.572 18 Si 0.796 3.204 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.182 1.182 22 N -0.167 5.167 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.146 0.854 26 H 0.185 0.815 27 H 0.210 0.790 28 H 0.193 0.807 29 H 0.115 0.885 30 H 0.147 0.853 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.011 0.989 34 H 0.017 0.983 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.207 16.227 13.340 23.355 hybrid contribution 0.677 -0.815 0.577 1.206 sum -9.530 15.412 13.917 22.848 Atomic orbital electron populations 1.23660 0.74072 1.05902 1.03047 1.86700 1.25370 1.31629 1.82815 1.21023 0.88309 0.81734 0.72037 1.90810 1.66313 1.36451 1.47105 1.20136 0.90551 0.90917 1.05838 1.22395 0.96601 0.97548 0.95615 1.22107 0.92384 1.00499 0.94268 1.22681 1.03785 0.91703 0.95224 1.20620 0.88634 0.94968 0.97347 1.22188 1.03311 0.96452 0.95774 1.87243 1.74999 1.32149 1.12809 1.23364 1.00468 0.93351 1.02411 1.18676 0.95182 0.94926 0.90675 1.21563 1.35854 1.07182 0.93425 0.91243 1.26034 0.97082 1.01940 0.94744 1.70119 1.47576 1.40913 0.98632 0.85347 0.78319 0.78552 0.78213 1.19839 1.20819 1.18231 1.67247 1.08700 1.31472 1.09243 0.90955 0.91462 0.85406 0.81515 0.78958 0.80692 0.88512 0.85349 0.89581 0.90636 0.98939 0.98316 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.35 -9.19 10.38 -55.80 -0.58 -9.77 16 3 C 0.52 14.07 7.95 70.43 0.56 14.63 16 4 O -0.52 -14.33 16.11 20.04 0.32 -14.01 16 5 C 0.06 1.59 6.75 41.88 0.28 1.87 16 6 C -0.10 -1.82 9.63 22.62 0.22 -1.60 16 7 C -0.07 -0.89 10.17 22.45 0.23 -0.66 16 8 C -0.11 -1.91 9.75 22.44 0.22 -1.69 16 9 C 0.13 3.10 6.04 42.69 0.26 3.36 16 10 C -0.03 -0.76 6.22 71.24 0.44 -0.31 16 11 S -0.30 -10.97 21.72 -56.49 -1.23 -12.20 16 12 C -0.05 -1.97 5.88 71.98 0.42 -1.54 16 13 C 0.04 2.34 4.98 29.85 0.15 2.49 16 14 C -0.54 -30.29 9.11 25.60 0.23 -30.06 16 15 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 16 C 0.00 0.02 5.46 84.66 0.46 0.48 16 17 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 18 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 N -0.45 -13.03 10.03 -173.12 -1.74 -14.77 16 23 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.13 1.52 8.14 -2.38 -0.02 1.50 16 26 H 0.17 2.39 7.64 -2.91 -0.02 2.37 16 27 H 0.19 0.86 8.06 -2.91 -0.02 0.83 16 28 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 29 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.13 2.48 8.07 -2.39 -0.02 2.46 16 31 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 32 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 33 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 34 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -73.85 327.90 4.85 -69.00 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 1.08 Total: 4.30 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 4.67 Total: -11.41 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -1.45 Total: -71.47 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.26 Total: -23.78 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -10.97 SS G_CDS: -1.23 Total: -12.20 kcal Total: -73.85 4.85 -69.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584832922.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.769 kcal (2) G-P(sol) polarization free energy of solvation -73.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds