Wall clock time and date at job start Tue Mar 31 2020 06:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99838 * 2 1 4 4 H 1.48501 * 109.47032 * 269.99748 * 3 2 1 5 5 H 1.48502 * 109.47274 * 29.99769 * 3 2 1 6 6 H 1.48502 * 109.47192 * 150.00276 * 3 2 1 7 7 C 1.37873 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00357 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00257 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47306 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47162 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47162 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46958 * 180.02562 * 12 11 10 14 14 O 1.21286 * 119.99964 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99896 * 180.02562 * 13 12 11 16 16 C 1.39971 * 120.00205 * 185.27244 * 15 13 12 17 17 C 1.38868 * 120.05909 * 213.58289 * 16 15 13 18 18 C 1.38105 * 119.94035 * 180.22597 * 17 16 15 19 19 C 1.38383 * 120.05645 * 359.48119 * 18 17 16 20 20 Cl 1.73606 * 119.94041 * 180.29397 * 19 18 17 21 21 C 1.38381 * 120.11918 * 0.26737 * 19 18 17 22 22 C 1.38111 * 120.05418 * 359.97438 * 21 19 18 23 23 H 0.97000 * 120.00177 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.47226 * 60.00276 * 9 7 2 25 25 H 1.09007 * 109.47263 * 300.00449 * 9 7 2 26 26 H 1.09001 * 109.47047 * 60.00578 * 10 9 7 27 27 H 1.09001 * 109.47375 * 299.99641 * 10 9 7 28 28 H 1.09006 * 109.46837 * 59.99924 * 11 10 9 29 29 H 1.08998 * 109.47449 * 300.00567 * 11 10 9 30 30 H 1.08993 * 109.47163 * 60.00277 * 12 11 10 31 31 H 1.09001 * 109.46957 * 299.99978 * 12 11 10 32 32 H 0.97005 * 120.00136 * 5.26924 * 15 13 12 33 33 H 1.07999 * 120.02596 * 359.97438 * 17 16 15 34 34 H 1.08001 * 119.97035 * 179.74747 * 18 17 16 35 35 H 1.07999 * 119.97502 * 180.02562 * 21 19 18 36 36 H 1.08001 * 120.02252 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 6 1.4804 -4.9871 0.0033 12 6 2.4747 -6.1500 0.0037 13 6 1.7212 -7.4551 0.0036 14 8 0.5083 -7.4551 0.0037 15 7 2.3951 -8.6223 0.0044 16 6 1.6998 -9.8320 -0.1071 17 6 2.1663 -10.9651 0.5463 18 6 1.4809 -12.1586 0.4308 19 6 0.3244 -12.2232 -0.3264 20 17 -0.5389 -13.7232 -0.4633 21 6 -0.1454 -11.0943 -0.9743 22 6 0.5389 -9.8995 -0.8661 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5576 -0.8881 25 1 0.6247 -2.5563 0.8920 26 1 2.8720 -3.6035 0.8927 27 1 2.8720 -3.6051 -0.8873 28 1 0.8540 -5.0454 -0.8869 29 1 0.8534 -5.0443 0.8930 30 1 3.1013 -6.0919 0.8936 31 1 3.1013 -6.0925 -0.8864 32 1 3.3620 -8.6241 0.0822 33 1 3.0664 -10.9141 1.1408 34 1 1.8455 -13.0411 0.9354 35 1 -1.0485 -11.1473 -1.5643 36 1 0.1715 -9.0187 -1.3716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588147769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:38 Heat of formation + Delta-G solvation = -43.491603 kcal Electronic energy + Delta-G solvation = -18162.892102 eV Core-core repulsion = 15057.807842 eV Total energy + Delta-G solvation = -3105.084260 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.77131 -38.86822 -36.77389 -35.09928 -34.76268 -32.68571 -31.40399 -30.42633 -29.05486 -25.77039 -23.59533 -23.10941 -21.89183 -20.36956 -20.04791 -18.16119 -17.06809 -16.87808 -16.17236 -16.02028 -15.25335 -14.76485 -14.46664 -14.20547 -13.98667 -13.81319 -13.63172 -12.75819 -12.56396 -12.45184 -12.07545 -11.82958 -11.74693 -11.64529 -11.14976 -11.01631 -10.60244 -10.53908 -10.46670 -10.41954 -9.98949 -9.65592 -9.36816 -9.26680 -9.01837 -8.35444 -8.32554 -5.97238 -3.99952 0.76193 0.97179 1.86292 2.44675 2.80276 3.32609 3.37065 3.38818 3.41763 4.40748 4.47156 4.54656 4.64513 4.91461 5.04789 5.14946 5.21062 5.24457 5.38148 5.57043 5.65581 5.73351 5.93066 5.95255 6.05728 6.09627 6.21765 6.46688 6.58131 6.77259 6.94862 7.10491 7.17112 7.71334 7.86586 7.95517 8.03703 8.45251 9.07680 9.63853 11.14046 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.058377 B = 0.002214 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.526218 B =12641.085553 C =13018.919111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.105 4.105 12 C -0.137 4.137 13 C 0.512 3.488 14 O -0.511 6.511 15 N -0.682 5.682 16 C 0.159 3.841 17 C -0.139 4.139 18 C -0.091 4.091 19 C -0.056 4.056 20 Cl -0.076 7.076 21 C -0.088 4.088 22 C -0.111 4.111 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.413 0.587 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.804 -26.670 -0.541 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.143 4.143 12 C -0.177 4.177 13 C 0.301 3.699 14 O -0.385 6.385 15 N -0.328 5.328 16 C 0.064 3.936 17 C -0.160 4.160 18 C -0.110 4.110 19 C -0.083 4.083 20 Cl -0.047 7.047 21 C -0.107 4.107 22 C -0.132 4.132 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.249 0.751 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.707 -26.577 -0.558 26.997 hybrid contribution 0.868 0.776 0.075 1.166 sum 5.575 -25.802 -0.483 26.402 Atomic orbital electron populations 1.69973 1.06048 1.26547 1.50860 1.25047 0.94855 0.99266 0.95447 0.86604 0.79809 0.83570 0.78055 1.20701 1.21248 1.19927 1.21271 0.92974 0.91176 1.50487 0.92747 1.19099 0.94049 0.91268 0.97341 1.21652 0.99106 0.93875 1.00158 1.21486 0.96992 0.92662 1.03127 1.21836 1.00221 0.91185 1.04469 1.21407 0.88646 0.85387 0.74462 1.90735 1.14110 1.87253 1.46360 1.43823 1.10940 1.04244 1.73776 1.17890 0.94200 0.85914 0.95556 1.20857 1.02255 0.91848 1.01006 1.20809 0.93655 0.98241 0.98273 1.20884 0.96071 0.87852 1.03492 1.98365 1.76544 1.32599 1.97197 1.20973 1.00161 0.90673 0.98943 1.21195 0.95226 0.98287 0.98457 0.93019 0.96574 0.96574 0.93392 0.93397 0.91661 0.91647 0.88692 0.88572 0.75116 0.84730 0.84656 0.84579 0.83691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.18 5.15 -26.73 -0.14 -2.32 16 11 C -0.10 -1.75 4.50 -26.73 -0.12 -1.87 16 12 C -0.14 -1.61 5.70 -27.88 -0.16 -1.77 16 13 C 0.51 6.40 7.57 -10.98 -0.08 6.32 16 14 O -0.51 -8.46 13.67 5.55 0.08 -8.39 16 15 N -0.68 -6.26 5.34 -9.85 -0.05 -6.32 16 16 C 0.16 1.62 6.28 -83.68 -0.53 1.09 16 17 C -0.14 -1.12 9.96 -39.40 -0.39 -1.51 16 18 C -0.09 -0.74 9.82 -39.58 -0.39 -1.13 16 19 C -0.06 -0.52 6.32 -39.48 -0.25 -0.77 16 20 Cl -0.08 -0.67 28.95 -51.86 -1.50 -2.17 16 21 C -0.09 -0.89 9.82 -39.58 -0.39 -1.27 16 22 C -0.11 -1.26 8.65 -39.40 -0.34 -1.60 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.06 1.17 8.10 -51.93 -0.42 0.74 16 29 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.41 2.30 8.82 -40.82 -0.36 1.94 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.15 1.84 6.42 -52.49 -0.34 1.51 16 LS Contribution 325.95 15.07 4.91 4.91 Total: -1.00 -33.17 325.95 -9.07 -42.24 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -4.88 Total: -2.29 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -3.34 Total: -18.12 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.68 Total: -32.90 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.08 Total: -8.39 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.17 -9.07 -42.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.250 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds