Wall clock time and date at job start Tue Mar 31 2020 06:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99838 * 2 1 4 4 H 1.48501 * 109.47032 * 269.99748 * 3 2 1 5 5 H 1.48502 * 109.47274 * 29.99769 * 3 2 1 6 6 H 1.48502 * 109.47192 * 150.00276 * 3 2 1 7 7 C 1.37873 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00357 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00257 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47306 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47162 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47162 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46958 * 180.02562 * 12 11 10 14 14 O 1.21286 * 119.99964 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99896 * 180.02562 * 13 12 11 16 16 C 1.39971 * 120.00205 * 185.27244 * 15 13 12 17 17 C 1.38868 * 120.05909 * 213.58289 * 16 15 13 18 18 C 1.38105 * 119.94035 * 180.22597 * 17 16 15 19 19 C 1.38383 * 120.05645 * 359.48119 * 18 17 16 20 20 Cl 1.73606 * 119.94041 * 180.29397 * 19 18 17 21 21 C 1.38381 * 120.11918 * 0.26737 * 19 18 17 22 22 C 1.38111 * 120.05418 * 359.97438 * 21 19 18 23 23 H 0.97000 * 120.00177 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.47226 * 60.00276 * 9 7 2 25 25 H 1.09007 * 109.47263 * 300.00449 * 9 7 2 26 26 H 1.09001 * 109.47047 * 60.00578 * 10 9 7 27 27 H 1.09001 * 109.47375 * 299.99641 * 10 9 7 28 28 H 1.09006 * 109.46837 * 59.99924 * 11 10 9 29 29 H 1.08998 * 109.47449 * 300.00567 * 11 10 9 30 30 H 1.08993 * 109.47163 * 60.00277 * 12 11 10 31 31 H 1.09001 * 109.46957 * 299.99978 * 12 11 10 32 32 H 0.97005 * 120.00136 * 5.26924 * 15 13 12 33 33 H 1.07999 * 120.02596 * 359.97438 * 17 16 15 34 34 H 1.08001 * 119.97035 * 179.74747 * 18 17 16 35 35 H 1.07999 * 119.97502 * 180.02562 * 21 19 18 36 36 H 1.08001 * 120.02252 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 6 1.4804 -4.9871 0.0033 12 6 2.4747 -6.1500 0.0037 13 6 1.7212 -7.4551 0.0036 14 8 0.5083 -7.4551 0.0037 15 7 2.3951 -8.6223 0.0044 16 6 1.6998 -9.8320 -0.1071 17 6 2.1663 -10.9651 0.5463 18 6 1.4809 -12.1586 0.4308 19 6 0.3244 -12.2232 -0.3264 20 17 -0.5389 -13.7232 -0.4633 21 6 -0.1454 -11.0943 -0.9743 22 6 0.5389 -9.8995 -0.8661 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5576 -0.8881 25 1 0.6247 -2.5563 0.8920 26 1 2.8720 -3.6035 0.8927 27 1 2.8720 -3.6051 -0.8873 28 1 0.8540 -5.0454 -0.8869 29 1 0.8534 -5.0443 0.8930 30 1 3.1013 -6.0919 0.8936 31 1 3.1013 -6.0925 -0.8864 32 1 3.3620 -8.6241 0.0822 33 1 3.0664 -10.9141 1.1408 34 1 1.8455 -13.0411 0.9354 35 1 -1.0485 -11.1473 -1.5643 36 1 0.1715 -9.0187 -1.3716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588147769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:38 Heat of formation + Delta-G solvation = -63.233300 kcal Electronic energy + Delta-G solvation = -18163.748167 eV Core-core repulsion = 15057.807842 eV Total energy + Delta-G solvation = -3105.940325 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.63781 -39.70549 -37.51392 -36.65154 -35.69949 -34.62000 -32.11387 -31.81757 -30.18890 -27.45153 -24.78734 -24.05899 -23.07550 -21.73800 -21.26987 -18.94149 -18.40758 -17.99550 -17.60663 -17.02315 -16.51266 -16.17155 -15.61537 -15.38909 -14.93903 -14.56180 -14.49988 -14.49271 -13.79963 -13.59743 -13.43201 -13.20766 -12.93838 -12.80417 -12.52358 -12.34222 -12.15853 -12.13151 -11.84666 -11.38826 -11.35353 -11.24677 -11.12825 -10.80803 -10.54618 -10.07574 -9.11521 -8.18452 -6.30469 0.00951 0.26457 1.15264 1.40790 1.42867 1.52843 1.53902 1.99505 2.42210 2.64247 3.14378 3.64506 3.83802 3.88493 4.02478 4.15382 4.23462 4.34544 4.45515 4.66485 4.69082 4.84358 4.87044 4.89054 4.97206 5.19185 5.20919 5.23195 5.33037 5.34277 5.40710 5.57953 5.79175 5.82329 5.89122 6.25699 6.38678 6.88445 7.10546 7.39223 8.93713 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.058377 B = 0.002214 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.526218 B =12641.085553 C =13018.919111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.017 3.983 10 C -0.096 4.096 11 C -0.098 4.098 12 C -0.125 4.125 13 C 0.512 3.488 14 O -0.562 6.562 15 N -0.662 5.662 16 C 0.142 3.858 17 C -0.126 4.126 18 C -0.088 4.088 19 C -0.063 4.063 20 Cl -0.072 7.072 21 C -0.099 4.099 22 C -0.133 4.133 23 H 0.262 0.738 24 H -0.016 1.016 25 H -0.016 1.016 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.433 0.567 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.139 0.861 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.991 -27.681 0.107 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.182 1.182 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.136 4.136 12 C -0.164 4.164 13 C 0.302 3.698 14 O -0.439 6.439 15 N -0.309 5.309 16 C 0.048 3.952 17 C -0.146 4.146 18 C -0.107 4.107 19 C -0.090 4.090 20 Cl -0.043 7.043 21 C -0.118 4.118 22 C -0.153 4.153 23 H 0.071 0.929 24 H 0.002 0.998 25 H 0.003 0.997 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.273 0.727 33 H 0.187 0.813 34 H 0.179 0.821 35 H 0.157 0.843 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.953 -27.628 0.088 28.750 hybrid contribution -0.178 1.009 -0.131 1.033 sum 7.776 -26.619 -0.043 27.732 Atomic orbital electron populations 1.70132 1.08064 1.27722 1.51958 1.26102 0.95792 1.03777 0.94881 0.85385 0.78690 0.78090 0.78497 1.19750 1.21061 1.18249 1.21763 0.93776 0.92209 1.50076 0.91490 1.19071 0.94747 0.93875 0.94294 1.21446 0.97791 0.92623 1.01471 1.21269 0.97537 0.93629 1.01179 1.21699 0.98925 0.88421 1.07387 1.21493 0.87994 0.86476 0.73806 1.90734 1.16309 1.87940 1.48961 1.43537 1.11827 1.03085 1.72420 1.18067 0.94223 0.86792 0.96163 1.21183 1.02848 0.90624 0.99975 1.21170 0.92837 0.99262 0.97457 1.21034 0.96649 0.87705 1.03614 1.98366 1.76614 1.32160 1.97200 1.21031 1.00461 0.90800 0.99509 1.21127 0.96529 0.97964 0.99728 0.92893 0.99754 0.99750 0.91906 0.91935 0.93753 0.93771 0.85581 0.85664 0.72706 0.81329 0.82091 0.84310 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.84 13.29 21.45 0.28 -58.55 16 2 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 3 Si 0.97 44.48 29.54 68.60 2.03 46.50 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.02 0.93 4.97 29.85 0.15 1.08 16 10 C -0.10 -3.74 5.15 30.60 0.16 -3.58 16 11 C -0.10 -3.31 4.50 30.60 0.14 -3.17 16 12 C -0.13 -2.65 5.70 29.85 0.17 -2.48 16 13 C 0.51 12.34 7.57 87.66 0.66 13.00 16 14 O -0.56 -19.27 13.67 -3.05 -0.04 -19.31 16 15 N -0.66 -10.74 5.34 -303.47 -1.62 -12.36 16 16 C 0.14 2.68 6.28 38.14 0.24 2.92 16 17 C -0.13 -1.65 9.96 22.39 0.22 -1.43 16 18 C -0.09 -1.21 9.82 22.27 0.22 -0.99 16 19 C -0.06 -1.11 6.32 22.34 0.14 -0.97 16 20 Cl -0.07 -1.19 28.95 -2.72 -0.08 -1.27 16 21 C -0.10 -2.01 9.82 22.27 0.22 -1.79 16 22 C -0.13 -3.08 8.65 22.39 0.19 -2.89 16 23 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 24 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 25 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 26 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.04 1.65 8.10 -2.38 -0.02 1.64 16 29 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 30 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.43 3.24 8.82 -92.70 -0.82 2.43 16 33 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 34 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 36 H 0.12 3.36 6.42 -2.91 -0.02 3.34 16 Total: -1.00 -75.39 325.95 4.04 -71.35 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 0.27 Total: 4.69 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 3.21 Total: -31.05 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: -1.34 Total: -70.91 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.04 Total: -19.31 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -75.39 4.04 -71.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588147769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.113 kcal (2) G-P(sol) polarization free energy of solvation -75.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds