Wall clock time and date at job start Tue Mar 31 2020 05:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86796 * 120.00277 * 2 1 4 4 H 1.48503 * 109.47180 * 270.00145 * 3 2 1 5 5 H 1.48502 * 109.47303 * 29.99843 * 3 2 1 6 6 H 1.48497 * 109.47078 * 150.00411 * 3 2 1 7 7 C 1.40276 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99730 * 165.47169 * 7 2 1 9 9 C 1.40888 * 120.00066 * 345.47555 * 7 2 1 10 10 C 1.40699 * 120.32902 * 333.17600 * 9 7 2 11 11 C 1.37593 * 119.88594 * 179.97438 * 10 9 7 12 12 C 1.38833 * 120.56919 * 359.97438 * 11 10 9 13 13 C 1.38225 * 120.67199 * 359.72316 * 12 11 10 14 14 C 1.39221 * 120.09091 * 0.55674 * 13 12 11 15 15 C 1.47435 * 120.28178 * 179.72362 * 14 13 12 16 16 O 1.21607 * 120.00544 * 148.16225 * 15 14 13 17 17 N 1.34778 * 119.99940 * 328.16074 * 15 14 13 18 18 C 1.47579 * 134.49595 * 174.88948 * 17 15 14 19 19 C 1.53951 * 86.11803 * 155.36036 * 18 17 15 20 20 C 1.53002 * 113.73913 * 137.95710 * 19 18 17 21 21 F 1.39901 * 109.46887 * 306.92006 * 20 19 18 22 22 F 1.39899 * 109.47312 * 66.92463 * 20 19 18 23 23 C 1.47815 * 134.45336 * 354.76083 * 17 15 14 24 24 H 0.97003 * 119.99359 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.05940 * 359.95496 * 10 9 7 26 26 H 1.08002 * 119.72303 * 179.97438 * 11 10 9 27 27 H 1.08000 * 119.66260 * 180.02562 * 12 11 10 28 28 H 1.08000 * 119.95367 * 180.27893 * 13 12 11 29 29 H 1.09007 * 113.76643 * 41.05829 * 18 17 15 30 30 H 1.08997 * 113.77237 * 269.66007 * 18 17 15 31 31 H 1.09002 * 113.73951 * 269.15355 * 19 18 17 32 32 H 1.09004 * 109.46499 * 186.92247 * 20 19 18 33 33 H 1.08994 * 113.77400 * 90.38011 * 23 17 15 34 34 H 1.08998 * 113.83913 * 318.91015 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4379 2.6527 0.7000 6 1 3.5379 1.4400 0.6999 7 6 2.0076 -1.2149 -0.0005 8 1 3.0617 -1.2297 -0.2352 9 6 1.3369 -2.4156 0.3049 10 6 0.1942 -2.4021 1.1256 11 6 -0.4541 -3.5801 1.4177 12 6 0.0090 -4.7859 0.9087 13 6 1.1257 -4.8254 0.0950 14 6 1.8064 -3.6508 -0.2135 15 6 3.0016 -3.6888 -1.0760 16 8 3.2564 -2.7485 -1.8039 17 7 3.8117 -4.7657 -1.0578 18 6 5.0004 -5.1790 -1.8288 19 6 5.3662 -6.0380 -0.6047 20 6 5.8857 -7.4317 -0.9633 21 9 4.9716 -8.0661 -1.8113 22 9 7.1206 -7.3168 -1.6108 23 6 3.8672 -6.0060 -0.2556 24 1 -0.4849 0.8401 0.0004 25 1 -0.1734 -1.4688 1.5260 26 1 -1.3308 -3.5668 2.0483 27 1 -0.5114 -5.7017 1.1470 28 1 1.4732 -5.7693 -0.2982 29 1 5.7025 -4.3679 -2.0220 30 1 4.7656 -5.7614 -2.7197 31 1 5.9968 -5.5230 0.1201 32 1 6.0059 -8.0198 -0.0534 33 1 3.2989 -6.8318 -0.6834 34 1 3.6663 -5.8540 0.8049 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601334257.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:20 Heat of formation + Delta-G solvation = -102.100949 kcal Electronic energy + Delta-G solvation = -21660.908211 eV Core-core repulsion = 18001.485778 eV Total energy + Delta-G solvation = -3659.422433 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.85878 -47.86444 -41.21477 -39.36262 -38.09348 -35.66367 -32.42695 -31.73631 -30.83137 -27.73134 -27.19498 -26.68476 -23.73893 -22.74927 -21.64902 -20.17776 -19.20264 -18.45525 -18.20902 -18.07524 -17.58677 -17.21696 -16.73367 -16.01279 -15.80307 -14.99246 -14.96827 -14.78979 -14.49115 -14.47331 -14.26674 -13.88373 -13.84221 -13.48692 -13.39927 -13.11594 -12.87723 -12.79129 -12.64098 -12.25400 -12.12206 -11.91971 -11.64279 -11.47234 -11.14523 -10.45644 -9.71124 -9.39569 -9.32478 -8.73735 -6.40266 0.55404 0.99947 1.30711 1.43190 1.49045 1.88807 2.16169 2.18249 2.68785 2.81820 3.09910 3.44965 3.50574 3.69795 3.91474 4.08847 4.21682 4.36674 4.40398 4.44431 4.52602 4.55421 4.64717 4.77957 5.05996 5.07425 5.14908 5.24056 5.33965 5.59223 5.85143 6.02492 6.10618 6.29174 6.58184 6.74580 6.87220 6.93790 7.48269 8.21955 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.021619 B = 0.005041 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.824711 B = 5552.816290 C = 6589.142596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.035 3.965 3 Si 0.979 3.021 4 H -0.271 1.271 5 H -0.251 1.251 6 H -0.261 1.261 7 C -0.458 4.458 8 H 0.065 0.935 9 C 0.113 3.887 10 C -0.185 4.185 11 C -0.089 4.089 12 C -0.241 4.241 13 C -0.050 4.050 14 C -0.280 4.280 15 C 0.588 3.412 16 O -0.588 6.588 17 N -0.658 5.658 18 C 0.103 3.897 19 C -0.160 4.160 20 C 0.276 3.724 21 F -0.214 7.214 22 F -0.215 7.215 23 C 0.117 3.883 24 H 0.292 0.708 25 H 0.107 0.893 26 H 0.120 0.880 27 H 0.132 0.868 28 H 0.126 0.874 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.146 0.854 32 H 0.167 0.833 33 H 0.106 0.894 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.256 -13.467 3.502 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.182 4.182 3 Si 0.799 3.201 4 H -0.196 1.196 5 H -0.175 1.175 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.084 0.916 9 C 0.109 3.891 10 C -0.205 4.205 11 C -0.108 4.108 12 C -0.260 4.260 13 C -0.069 4.069 14 C -0.284 4.284 15 C 0.383 3.617 16 O -0.470 6.470 17 N -0.394 5.394 18 C -0.019 4.019 19 C -0.179 4.179 20 C 0.222 3.778 21 F -0.196 7.196 22 F -0.196 7.196 23 C -0.005 4.005 24 H 0.103 0.897 25 H 0.125 0.875 26 H 0.138 0.862 27 H 0.150 0.850 28 H 0.144 0.856 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.163 0.837 32 H 0.183 0.817 33 H 0.124 0.876 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.049 -12.647 3.064 15.301 hybrid contribution 0.106 1.103 -0.600 1.260 sum 8.154 -11.544 2.464 14.346 Atomic orbital electron populations 1.69747 1.08733 1.30926 1.34325 1.26796 0.95628 1.04455 0.91284 0.85268 0.79327 0.76209 0.79272 1.19639 1.17480 1.18529 1.19839 0.97147 0.92112 1.39531 0.91649 1.17810 0.91243 0.91854 0.88206 1.21331 0.99254 0.97723 1.02165 1.21175 0.98378 0.92788 0.98416 1.20762 1.00918 0.97556 1.06772 1.21017 0.94952 0.95480 0.95445 1.19660 1.02221 0.95661 1.10893 1.18267 0.81946 0.80211 0.81246 1.90661 1.74620 1.37320 1.44366 1.50032 1.30572 1.19262 1.39536 1.23174 0.85949 0.96933 0.95880 1.24354 0.98521 0.95409 0.99621 1.22063 0.72417 0.93484 0.89802 1.92964 1.67856 1.83621 1.75147 1.92975 1.44903 1.97015 1.84698 1.23396 0.92907 0.85665 0.98486 0.89666 0.87515 0.86175 0.85000 0.85649 0.90800 0.89356 0.83666 0.81659 0.87568 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.56 10.92 21.88 0.24 -43.32 16 2 C 0.03 1.85 5.20 85.37 0.44 2.30 16 3 Si 0.98 41.38 29.59 68.60 2.03 43.41 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 6 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.46 -26.74 7.78 23.41 0.18 -26.56 16 8 H 0.07 4.01 6.39 -2.91 -0.02 3.99 16 9 C 0.11 6.30 5.58 -21.11 -0.12 6.18 16 10 C -0.19 -9.61 8.67 22.72 0.20 -9.42 16 11 C -0.09 -3.87 10.01 22.26 0.22 -3.65 16 12 C -0.24 -9.45 10.03 22.41 0.22 -9.23 16 13 C -0.05 -2.07 8.88 22.50 0.20 -1.87 16 14 C -0.28 -14.01 5.80 -19.70 -0.11 -14.13 16 15 C 0.59 28.87 7.42 86.67 0.64 29.51 16 16 O -0.59 -34.25 15.30 -4.05 -0.06 -34.31 16 17 N -0.66 -23.57 3.57 -839.74 -3.00 -26.57 16 18 C 0.10 2.89 8.28 86.49 0.72 3.61 16 19 C -0.16 -2.93 4.22 -10.13 -0.04 -2.98 16 20 C 0.28 3.79 5.31 71.98 0.38 4.18 16 21 F -0.21 -3.98 15.74 44.97 0.71 -3.27 16 22 F -0.21 -3.92 17.31 44.97 0.78 -3.14 16 23 C 0.12 2.70 6.01 86.44 0.52 3.22 16 24 H 0.29 14.01 8.29 -92.71 -0.77 13.24 16 25 H 0.11 5.75 6.21 -2.91 -0.02 5.74 16 26 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 27 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 28 H 0.13 4.19 6.17 -2.91 -0.02 4.17 16 29 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 30 H 0.09 2.37 7.66 -2.39 -0.02 2.35 16 31 H 0.15 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.17 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.11 2.10 7.00 -2.39 -0.02 2.08 16 34 H 0.10 2.19 8.08 -2.39 -0.02 2.17 16 Total: -1.00 -73.78 297.27 5.29 -68.49 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 1.14 Total: 17.55 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 3.46 Total: -18.84 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -2.76 Total: -69.89 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.06 Total: -34.31 kcal Atomic # 9 Polarization: -7.90 SS G_CDS: 1.49 Total: -6.41 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -73.78 5.29 -68.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601334257.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.608 kcal (2) G-P(sol) polarization free energy of solvation -73.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds