Wall clock time and date at job start Tue Mar 31 2020 05:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00071 * 2 1 4 4 N 1.46494 * 109.47277 * 125.00547 * 3 2 1 5 5 C 1.46505 * 119.99831 * 277.32229 * 4 3 2 6 6 S 1.65606 * 120.00332 * 97.32439 * 4 3 2 7 7 O 1.42094 * 106.39805 * 344.08366 * 6 4 3 8 8 O 1.42100 * 106.40173 * 211.16335 * 6 4 3 9 9 C 1.76202 * 107.21718 * 97.62301 * 6 4 3 10 10 C 1.37639 * 120.12737 * 113.92427 * 9 6 4 11 11 C 1.38610 * 120.24769 * 179.97438 * 10 9 6 12 12 C 1.38652 * 120.50421 * 0.02562 * 11 10 9 13 13 C 1.37598 * 120.24409 * 0.02562 * 12 11 10 14 14 C 1.40693 * 120.12774 * 293.65232 * 9 6 4 15 15 C 1.41400 * 120.24462 * 359.97438 * 14 9 6 16 16 H 1.08000 * 119.99952 * 326.95863 * 15 14 9 17 17 C 1.39941 * 120.00289 * 146.96029 * 15 14 9 18 18 N 1.30827 * 119.99565 * 350.10438 * 17 15 14 19 19 Si 1.86799 * 120.00326 * 170.10181 * 17 15 14 20 20 H 1.48502 * 109.46801 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46668 * 119.99849 * 19 17 15 22 22 H 1.48498 * 109.47220 * 239.99819 * 19 17 15 23 23 H 1.08002 * 119.99306 * 359.97438 * 1 2 3 24 24 H 1.07994 * 120.00106 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99836 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.47299 * 5.00112 * 3 2 1 27 27 H 1.09006 * 109.47150 * 245.00194 * 3 2 1 28 28 H 1.08992 * 109.47553 * 270.00162 * 5 4 3 29 29 H 1.09003 * 109.47054 * 30.00215 * 5 4 3 30 30 H 1.08995 * 109.46871 * 149.99743 * 5 4 3 31 31 H 1.08002 * 119.87343 * 0.02562 * 10 9 6 32 32 H 1.08001 * 119.74757 * 179.97438 * 11 10 9 33 33 H 1.08001 * 119.87952 * 180.02562 * 12 11 10 34 34 H 1.08002 * 120.12707 * 179.97438 * 13 12 11 35 35 H 0.97004 * 120.00024 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1313 5 6 2.5169 1.7131 2.4630 6 16 4.5847 0.9311 0.9049 7 8 4.6563 0.2656 -0.3485 8 8 5.0284 0.3466 2.1218 9 6 5.4807 2.4371 0.7205 10 6 6.4034 2.8127 1.6703 11 6 7.1100 3.9966 1.5275 12 6 6.8965 4.8156 0.4292 13 6 5.9782 4.4605 -0.5320 14 6 5.2599 3.2574 -0.4010 15 6 4.3190 2.8787 -1.3863 16 1 4.1639 1.8339 -1.6114 17 6 3.5889 3.8576 -2.0696 18 7 3.6300 5.1025 -1.6695 19 14 2.5558 3.3869 -3.5530 20 1 2.6779 1.9273 -3.7981 21 1 1.1338 3.7275 -3.2939 22 1 3.0338 4.1314 -4.7456 23 1 -0.5399 0.9354 0.0004 24 1 -0.5400 -0.9352 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3587 2.1316 0.0896 27 1 2.6213 1.4026 -0.9314 28 1 2.6174 2.7909 2.5902 29 1 1.4693 1.4309 2.5683 30 1 3.1091 1.2010 3.2214 31 1 6.5780 2.1822 2.5296 32 1 7.8318 4.2837 2.2778 33 1 7.4530 5.7356 0.3279 34 1 5.8131 5.1000 -1.3865 35 1 3.1236 5.7811 -2.1430 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601395857.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:57 Heat of formation + Delta-G solvation = -33.132516 kcal Electronic energy + Delta-G solvation = -20837.974233 eV Core-core repulsion = 17735.382882 eV Total energy + Delta-G solvation = -3102.591350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -37.64051 -36.56957 -36.22093 -34.88361 -33.88803 -32.64441 -30.25127 -29.60010 -27.15820 -25.51636 -23.90089 -21.66309 -21.17343 -19.77956 -18.07512 -17.63480 -17.00757 -16.04969 -15.81050 -15.37331 -14.58789 -14.38651 -13.99138 -13.53133 -13.25988 -13.15955 -12.78571 -12.68843 -12.20812 -12.00835 -11.94776 -11.40948 -11.29963 -11.21510 -11.16147 -11.04006 -10.96142 -10.79716 -10.55676 -10.34891 -9.88924 -9.50543 -9.29889 -9.10502 -8.42422 -8.04250 -7.58938 -7.06170 -4.81403 1.46613 2.30382 2.53057 2.68241 2.95011 3.03362 3.04488 3.74600 3.91118 4.36721 4.72273 5.17268 5.26099 5.35796 5.41939 5.59774 5.87096 5.94639 6.00962 6.11801 6.19395 6.21154 6.36182 6.38420 6.55616 6.77159 6.84090 6.87475 6.95610 7.04080 7.29027 7.31978 7.48577 7.66747 7.76701 7.91614 8.31992 8.49750 8.61928 9.88650 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.012955 B = 0.011815 C = 0.007129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.849850 B = 2369.354906 C = 3926.535821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C 0.141 3.859 4 N -0.990 5.990 5 C 0.092 3.908 6 S 2.704 3.296 7 O -0.971 6.971 8 O -0.996 6.996 9 C -0.772 4.772 10 C -0.006 4.006 11 C -0.245 4.245 12 C -0.077 4.077 13 C -0.154 4.154 14 C 0.196 3.804 15 C -0.485 4.485 16 H 0.118 0.882 17 C 0.082 3.918 18 N -0.782 5.782 19 Si 0.898 3.102 20 H -0.248 1.248 21 H -0.267 1.267 22 H -0.267 1.267 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.116 0.884 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.227 -2.132 2.028 5.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.178 4.178 3 C 0.016 3.984 4 N -0.825 5.825 5 C -0.054 4.054 6 S 2.802 3.198 7 O -0.962 6.962 8 O -0.986 6.986 9 C -0.867 4.867 10 C -0.026 4.026 11 C -0.265 4.265 12 C -0.096 4.096 13 C -0.174 4.174 14 C 0.191 3.809 15 C -0.513 4.513 16 H 0.135 0.865 17 C -0.139 4.139 18 N -0.405 5.405 19 Si 0.721 3.279 20 H -0.171 1.171 21 H -0.192 1.192 22 H -0.192 1.192 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.126 0.874 26 H 0.094 0.906 27 H 0.134 0.866 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.139 0.861 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.035 -2.760 1.983 6.075 hybrid contribution -0.388 0.954 -0.636 1.210 sum -5.424 -1.806 1.347 5.873 Atomic orbital electron populations 1.23761 0.95739 1.01479 1.02663 1.23626 0.96320 0.99879 0.97940 1.20690 0.93025 0.93990 0.90664 1.57223 1.26111 1.85177 1.14010 1.21416 1.00644 1.00246 0.83140 1.01053 0.71795 0.74534 0.72416 1.93469 1.85703 1.73820 1.43174 1.93429 1.80835 1.76932 1.47451 1.29971 1.22535 1.27436 1.06717 1.20269 0.92551 0.94723 0.95022 1.20524 1.06671 0.98109 1.01193 1.20923 0.96893 0.97254 0.94528 1.21468 0.96913 0.99228 0.99774 1.17026 0.87111 0.89229 0.87531 1.20512 1.17615 0.96684 1.16532 0.86453 1.25955 0.96481 0.94193 0.97229 1.69792 1.32962 1.02046 1.35735 0.86372 0.79446 0.81376 0.80728 1.17092 1.19213 1.19228 0.88631 0.88801 0.87354 0.90625 0.86599 0.92960 0.91553 0.90713 0.87369 0.88611 0.88740 0.86120 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.58 14.32 29.01 0.42 -2.17 16 2 C -0.16 -2.47 9.82 -36.03 -0.35 -2.83 16 3 C 0.14 2.54 5.29 -5.20 -0.03 2.52 16 4 N -0.99 -18.83 3.16 -123.06 -0.39 -19.22 16 5 C 0.09 1.45 10.70 59.85 0.64 2.09 16 6 S 2.70 60.03 5.09 -107.50 -0.55 59.48 16 7 O -0.97 -23.32 14.54 -57.17 -0.83 -24.15 16 8 O -1.00 -22.81 15.74 -57.17 -0.90 -23.71 16 9 C -0.77 -18.51 5.97 -38.87 -0.23 -18.75 16 10 C -0.01 -0.13 9.54 -39.66 -0.38 -0.51 16 11 C -0.24 -5.33 10.05 -39.29 -0.39 -5.73 16 12 C -0.08 -1.72 10.02 -39.66 -0.40 -2.12 16 13 C -0.15 -3.78 8.63 -38.87 -0.34 -4.11 16 14 C 0.20 4.93 5.50 -106.82 -0.59 4.35 16 15 C -0.49 -11.84 6.36 -37.74 -0.24 -12.08 16 16 H 0.12 2.89 4.08 -52.49 -0.21 2.67 16 17 C 0.08 1.87 5.25 -17.34 -0.09 1.78 16 18 N -0.78 -18.23 11.08 55.55 0.62 -17.61 16 19 Si 0.90 17.23 29.52 -169.99 -5.02 12.21 16 20 H -0.25 -4.79 7.11 56.52 0.40 -4.39 16 21 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 22 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 23 H 0.10 1.15 7.84 -52.49 -0.41 0.74 16 24 H 0.09 1.04 8.06 -52.49 -0.42 0.62 16 25 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 26 H 0.08 1.25 7.77 -51.93 -0.40 0.85 16 27 H 0.12 2.33 4.29 -51.93 -0.22 2.11 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.07 1.16 7.11 -51.93 -0.37 0.79 16 31 H 0.11 2.27 7.32 -52.49 -0.38 1.89 16 32 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 34 H 0.12 2.98 6.51 -52.49 -0.34 2.64 16 35 H 0.29 6.02 8.30 -40.82 -0.34 5.68 16 LS Contribution 303.56 15.07 4.57 4.57 Total: -1.00 -28.13 303.56 -8.49 -36.62 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -4.01 Total: 9.36 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: -1.98 Total: -37.55 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.23 Total: -36.84 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -1.73 Total: -47.86 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.02 Total: 12.21 kcal Atomic # 16 Polarization: 60.03 SS G_CDS: -0.55 Total: 59.48 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.13 -8.49 -36.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601395857.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.486 kcal (2) G-P(sol) polarization free energy of solvation -28.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds