Wall clock time and date at job start Tue Mar 31 2020 05:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00071 * 2 1 4 4 N 1.46494 * 109.47277 * 125.00547 * 3 2 1 5 5 C 1.46505 * 119.99831 * 277.32229 * 4 3 2 6 6 S 1.65606 * 120.00332 * 97.32439 * 4 3 2 7 7 O 1.42094 * 106.39805 * 344.08366 * 6 4 3 8 8 O 1.42100 * 106.40173 * 211.16335 * 6 4 3 9 9 C 1.76202 * 107.21718 * 97.62301 * 6 4 3 10 10 C 1.37639 * 120.12737 * 113.92427 * 9 6 4 11 11 C 1.38610 * 120.24769 * 179.97438 * 10 9 6 12 12 C 1.38652 * 120.50421 * 0.02562 * 11 10 9 13 13 C 1.37598 * 120.24409 * 0.02562 * 12 11 10 14 14 C 1.40693 * 120.12774 * 293.65232 * 9 6 4 15 15 C 1.41400 * 120.24462 * 359.97438 * 14 9 6 16 16 H 1.08000 * 119.99952 * 326.95863 * 15 14 9 17 17 C 1.39941 * 120.00289 * 146.96029 * 15 14 9 18 18 N 1.30827 * 119.99565 * 350.10438 * 17 15 14 19 19 Si 1.86799 * 120.00326 * 170.10181 * 17 15 14 20 20 H 1.48502 * 109.46801 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46668 * 119.99849 * 19 17 15 22 22 H 1.48498 * 109.47220 * 239.99819 * 19 17 15 23 23 H 1.08002 * 119.99306 * 359.97438 * 1 2 3 24 24 H 1.07994 * 120.00106 * 180.02562 * 1 2 3 25 25 H 1.08002 * 119.99836 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.47299 * 5.00112 * 3 2 1 27 27 H 1.09006 * 109.47150 * 245.00194 * 3 2 1 28 28 H 1.08992 * 109.47553 * 270.00162 * 5 4 3 29 29 H 1.09003 * 109.47054 * 30.00215 * 5 4 3 30 30 H 1.08995 * 109.46871 * 149.99743 * 5 4 3 31 31 H 1.08002 * 119.87343 * 0.02562 * 10 9 6 32 32 H 1.08001 * 119.74757 * 179.97438 * 11 10 9 33 33 H 1.08001 * 119.87952 * 180.02562 * 12 11 10 34 34 H 1.08002 * 120.12707 * 179.97438 * 13 12 11 35 35 H 0.97004 * 120.00024 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1313 5 6 2.5169 1.7131 2.4630 6 16 4.5847 0.9311 0.9049 7 8 4.6563 0.2656 -0.3485 8 8 5.0284 0.3466 2.1218 9 6 5.4807 2.4371 0.7205 10 6 6.4034 2.8127 1.6703 11 6 7.1100 3.9966 1.5275 12 6 6.8965 4.8156 0.4292 13 6 5.9782 4.4605 -0.5320 14 6 5.2599 3.2574 -0.4010 15 6 4.3190 2.8787 -1.3863 16 1 4.1639 1.8339 -1.6114 17 6 3.5889 3.8576 -2.0696 18 7 3.6300 5.1025 -1.6695 19 14 2.5558 3.3869 -3.5530 20 1 2.6779 1.9273 -3.7981 21 1 1.1338 3.7275 -3.2939 22 1 3.0338 4.1314 -4.7456 23 1 -0.5399 0.9354 0.0004 24 1 -0.5400 -0.9352 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3587 2.1316 0.0896 27 1 2.6213 1.4026 -0.9314 28 1 2.6174 2.7909 2.5902 29 1 1.4693 1.4309 2.5683 30 1 3.1091 1.2010 3.2214 31 1 6.5780 2.1822 2.5296 32 1 7.8318 4.2837 2.2778 33 1 7.4530 5.7356 0.3279 34 1 5.8131 5.1000 -1.3865 35 1 3.1236 5.7811 -2.1430 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601395857.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:56 Heat of formation + Delta-G solvation = -49.911029 kcal Electronic energy + Delta-G solvation = -20838.701804 eV Core-core repulsion = 17735.382882 eV Total energy + Delta-G solvation = -3103.318921 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.40492 -38.22384 -37.72693 -36.68749 -35.63287 -33.87507 -32.02157 -31.38181 -28.47254 -27.26467 -25.28487 -23.42588 -22.94729 -20.98245 -19.76452 -19.36689 -18.63644 -17.76432 -17.32893 -17.01799 -16.13560 -15.95887 -15.45578 -15.12181 -14.92875 -14.70569 -14.45963 -13.97204 -13.80535 -13.60611 -13.50349 -13.05993 -12.98901 -12.92689 -12.84429 -12.57650 -12.47808 -12.16332 -12.13155 -11.95752 -11.62818 -11.18827 -11.01550 -10.30861 -9.93153 -9.76433 -9.39506 -8.77899 -6.62438 -0.21288 0.51844 0.95552 1.37980 1.39107 1.45718 1.52471 2.16703 2.33165 2.62705 2.98461 3.46410 3.69967 3.97001 4.13905 4.30555 4.35719 4.48055 4.60483 4.69288 4.73396 4.92846 4.95495 4.98263 5.12132 5.15752 5.21618 5.27976 5.53476 5.63475 5.71597 5.73921 5.85872 5.97941 5.99883 6.13722 6.51299 6.71765 6.82142 8.19797 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.012955 B = 0.011815 C = 0.007129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.849850 B = 2369.354906 C = 3926.535821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.191 4.191 3 C 0.138 3.862 4 N -0.989 5.989 5 C 0.085 3.915 6 S 2.716 3.284 7 O -0.996 6.996 8 O -1.007 7.007 9 C -0.792 4.792 10 C -0.020 4.020 11 C -0.246 4.246 12 C -0.076 4.076 13 C -0.182 4.182 14 C 0.168 3.832 15 C -0.502 4.502 16 H 0.109 0.891 17 C 0.054 3.946 18 N -0.804 5.804 19 Si 0.952 3.048 20 H -0.255 1.255 21 H -0.248 1.248 22 H -0.262 1.262 23 H 0.110 0.890 24 H 0.118 0.882 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.827 -1.961 2.383 7.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.211 4.211 3 C 0.014 3.986 4 N -0.826 5.826 5 C -0.059 4.059 6 S 2.814 3.186 7 O -0.987 6.987 8 O -0.998 6.998 9 C -0.886 4.886 10 C -0.040 4.040 11 C -0.266 4.266 12 C -0.095 4.095 13 C -0.201 4.201 14 C 0.164 3.836 15 C -0.531 4.531 16 H 0.126 0.874 17 C -0.164 4.164 18 N -0.428 5.428 19 Si 0.771 3.229 20 H -0.179 1.179 21 H -0.172 1.172 22 H -0.187 1.187 23 H 0.128 0.872 24 H 0.136 0.864 25 H 0.118 0.882 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.128 0.872 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.620 -2.571 2.352 7.482 hybrid contribution 0.079 0.916 -0.677 1.142 sum -6.541 -1.655 1.675 6.952 Atomic orbital electron populations 1.24048 0.94625 1.03313 0.98090 1.23407 0.97236 0.98309 1.02124 1.20727 0.92730 0.95958 0.89200 1.57036 1.24878 1.85123 1.15546 1.21640 1.02480 1.00329 0.81500 1.00548 0.72493 0.73978 0.71628 1.93424 1.86459 1.74433 1.44362 1.93399 1.81657 1.77119 1.47608 1.30307 1.23517 1.27916 1.06834 1.20601 0.92514 0.95552 0.95322 1.20924 1.06660 0.97442 1.01579 1.21269 0.96106 0.98250 0.93868 1.21518 0.98454 0.99593 1.00579 1.17347 0.87889 0.90018 0.88364 1.20564 1.18342 0.96705 1.17443 0.87383 1.26573 0.97009 0.93850 0.99005 1.69812 1.33537 1.02803 1.36675 0.85585 0.79015 0.80567 0.77707 1.17850 1.17158 1.18651 0.87203 0.86355 0.88188 0.89383 0.89178 0.92956 0.88381 0.90612 0.86011 0.85310 0.85809 0.87154 0.89394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 14.32 67.78 0.97 -2.72 16 2 C -0.19 -5.70 9.82 25.64 0.25 -5.45 16 3 C 0.14 4.91 5.29 85.63 0.45 5.36 16 4 N -0.99 -37.35 3.16 -543.24 -1.72 -39.07 16 5 C 0.09 2.60 10.70 127.77 1.37 3.97 16 6 S 2.72 122.51 5.09 -56.49 -0.29 122.22 16 7 O -1.00 -49.37 14.54 -128.00 -1.86 -51.23 16 8 O -1.01 -46.34 15.74 -128.00 -2.01 -48.36 16 9 C -0.79 -38.61 5.97 22.73 0.14 -38.47 16 10 C -0.02 -0.92 9.54 22.22 0.21 -0.70 16 11 C -0.25 -10.40 10.05 22.46 0.23 -10.17 16 12 C -0.08 -3.34 10.02 22.22 0.22 -3.12 16 13 C -0.18 -9.04 8.63 22.73 0.20 -8.85 16 14 C 0.17 8.68 5.50 -21.29 -0.12 8.57 16 15 C -0.50 -25.15 6.36 23.46 0.15 -25.00 16 16 H 0.11 5.53 4.08 -2.91 -0.01 5.52 16 17 C 0.05 2.49 5.25 85.26 0.45 2.94 16 18 N -0.80 -37.67 11.08 21.83 0.24 -37.42 16 19 Si 0.95 34.94 29.52 68.60 2.02 36.97 16 20 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 21 H -0.25 -8.27 7.11 99.48 0.71 -7.57 16 22 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 23 H 0.11 2.20 7.84 -2.91 -0.02 2.17 16 24 H 0.12 2.13 8.06 -2.91 -0.02 2.11 16 25 H 0.10 3.12 8.06 -2.91 -0.02 3.09 16 26 H 0.09 2.81 7.77 -2.39 -0.02 2.79 16 27 H 0.09 3.68 4.29 -2.38 -0.01 3.67 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.10 2.34 8.07 -2.39 -0.02 2.32 16 30 H 0.08 2.28 7.11 -2.39 -0.02 2.26 16 31 H 0.12 5.05 7.32 -2.91 -0.02 5.03 16 32 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 33 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 34 H 0.11 5.59 6.51 -2.91 -0.02 5.57 16 35 H 0.29 12.34 8.30 -92.71 -0.77 11.57 16 Total: -1.00 -60.89 303.56 2.00 -58.90 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: 1.10 Total: 31.64 kcal Atomic # 6 Polarization: -78.16 SS G_CDS: 4.51 Total: -73.65 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -1.48 Total: -76.49 kcal Atomic # 8 Polarization: -95.71 SS G_CDS: -3.88 Total: -99.58 kcal Atomic # 14 Polarization: 34.94 SS G_CDS: 2.02 Total: 36.97 kcal Atomic # 16 Polarization: 122.51 SS G_CDS: -0.29 Total: 122.22 kcal Total: -60.89 2.00 -58.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601395857.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.984 kcal (2) G-P(sol) polarization free energy of solvation -60.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds