Wall clock time and date at job start Tue Mar 31 2020 05:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42105 * 109.46988 * 2 1 4 4 C 1.76197 * 103.00066 * 250.94469 * 2 1 3 5 5 C 1.38394 * 119.92658 * 89.99757 * 4 2 1 6 6 C 1.38330 * 120.29020 * 179.97438 * 5 4 2 7 7 C 1.37985 * 120.14757 * 0.02562 * 6 5 4 8 8 C 1.39548 * 119.85106 * 0.02562 * 7 6 5 9 9 C 1.47846 * 120.14462 * 180.02562 * 8 7 6 10 10 O 1.21553 * 120.00368 * 180.02562 * 9 8 7 11 11 N 1.34783 * 119.99708 * 359.97438 * 9 8 7 12 12 C 1.46505 * 119.99662 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46681 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.46785 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99952 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00041 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99585 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00028 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47330 * 90.00017 * 18 16 14 20 20 H 1.48505 * 109.46844 * 210.00128 * 18 16 14 21 21 H 1.48504 * 109.47001 * 329.99711 * 18 16 14 22 22 C 1.37933 * 119.92995 * 269.72719 * 4 2 1 23 23 H 1.09000 * 109.46905 * 49.05257 * 1 2 3 24 24 H 1.08994 * 109.47180 * 169.05162 * 1 2 3 25 25 H 1.09001 * 109.47115 * 289.05867 * 1 2 3 26 26 H 1.07997 * 119.85054 * 0.02562 * 5 4 2 27 27 H 1.08003 * 119.92764 * 180.02562 * 6 5 4 28 28 H 1.07998 * 120.07082 * 180.02562 * 7 6 5 29 29 H 0.96996 * 119.99965 * 0.02562 * 11 9 8 30 30 H 1.09003 * 109.46779 * 299.99963 * 12 11 9 31 31 H 1.08997 * 109.47355 * 60.00136 * 12 11 9 32 32 H 1.09003 * 109.46923 * 299.99189 * 13 12 11 33 33 H 1.08997 * 109.47676 * 59.99645 * 13 12 11 34 34 H 0.96998 * 119.99633 * 179.97438 * 17 16 14 35 35 H 1.08000 * 120.07371 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2104 -0.5605 -1.6227 5 6 2.3657 0.3535 -2.6502 6 6 2.6774 -0.0782 -3.9269 7 6 2.8351 -1.4246 -4.1840 8 6 2.6788 -2.3516 -3.1527 9 6 2.8468 -3.7959 -3.4207 10 8 2.7097 -4.6011 -2.5206 11 7 3.1510 -4.2196 -4.6635 12 6 3.3169 -5.6508 -4.9292 13 6 3.6570 -5.8591 -6.4064 14 6 3.8283 -7.3312 -6.6796 15 1 3.7072 -8.0466 -5.8796 16 6 4.1396 -7.7648 -7.9509 17 7 4.2875 -6.8935 -8.9249 18 14 4.3512 -9.5895 -8.2897 19 1 3.0435 -10.1757 -8.6785 20 1 5.3261 -9.7781 -9.3940 21 1 4.8525 -10.2653 -7.0661 22 6 2.3708 -1.9089 -1.8651 23 1 -0.3633 0.6735 -0.7762 24 1 -0.3633 -1.0089 -0.1952 25 1 -0.3633 0.3356 0.9713 26 1 2.2438 1.4085 -2.4541 27 1 2.7976 0.6403 -4.7243 28 1 3.0788 -1.7603 -5.1811 29 1 3.2601 -3.5771 -5.3819 30 1 4.1248 -6.0437 -4.3118 31 1 2.3908 -6.1742 -4.6919 32 1 2.8493 -5.4662 -7.0240 33 1 4.5832 -5.3357 -6.6434 34 1 4.5069 -7.1985 -9.8192 35 1 2.2541 -2.6208 -1.0614 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613718488.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:22 Heat of formation + Delta-G solvation = -58.049504 kcal Electronic energy + Delta-G solvation = -18518.680170 eV Core-core repulsion = 15415.008338 eV Total energy + Delta-G solvation = -3103.671832 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.07377 -38.22767 -36.01885 -35.00522 -33.00604 -31.64780 -31.29053 -29.46322 -29.07438 -25.25777 -23.66946 -22.98744 -21.09739 -20.45605 -18.57996 -17.35218 -16.60269 -16.10058 -15.81926 -15.64593 -15.19502 -14.94706 -14.71310 -14.51227 -14.04771 -13.88235 -13.41068 -13.37345 -13.06132 -12.60365 -12.35099 -12.33764 -11.95756 -11.73796 -11.25006 -11.07518 -10.68317 -10.58504 -10.39884 -9.93603 -9.56725 -9.53719 -9.28197 -9.21336 -8.69041 -8.60657 -8.41257 -6.13424 -4.16485 0.50785 0.87681 1.55392 2.35007 2.88703 3.27031 3.33210 3.36573 3.47986 3.59806 3.77197 4.38232 4.60029 4.65559 4.81927 4.85579 4.94707 5.01138 5.20994 5.23894 5.41813 5.62952 5.64828 5.90699 6.01350 6.06073 6.27029 6.27979 6.55484 6.66369 6.79532 7.45540 7.55309 7.84054 7.88393 8.22107 8.49593 8.89390 9.48687 10.98222 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.046109 B = 0.002802 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.111205 B = 9991.911890 C =10411.976595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.337 4.663 3 O -0.859 6.859 4 C -0.472 4.472 5 C -0.036 4.036 6 C -0.141 4.141 7 C -0.051 4.051 8 C -0.142 4.142 9 C 0.549 3.451 10 O -0.545 6.545 11 N -0.716 5.716 12 C 0.121 3.879 13 C 0.012 3.988 14 C -0.522 4.522 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.012 3.988 23 H 0.081 0.919 24 H 0.113 0.887 25 H 0.106 0.894 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.397 0.603 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.022 0.978 33 H 0.023 0.977 34 H 0.262 0.738 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.865 13.872 15.335 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.534 4.466 3 O -0.855 6.855 4 C -0.568 4.568 5 C -0.055 4.055 6 C -0.160 4.160 7 C -0.070 4.070 8 C -0.146 4.146 9 C 0.335 3.665 10 O -0.424 6.424 11 N -0.365 5.365 12 C -0.001 4.001 13 C -0.026 4.026 14 C -0.561 4.561 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.008 4.008 23 H 0.100 0.900 24 H 0.132 0.868 25 H 0.124 0.876 26 H 0.147 0.853 27 H 0.149 0.851 28 H 0.152 0.848 29 H 0.231 0.769 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.303 13.542 16.489 21.986 hybrid contribution -0.690 0.651 -2.658 2.822 sum -5.993 14.193 13.830 20.703 Atomic orbital electron populations 1.27768 1.22266 1.08219 1.07272 1.69670 0.86014 0.99224 0.91701 1.93086 1.73297 1.37411 1.81688 1.27657 1.13323 0.99273 1.16576 1.21280 0.92421 0.99534 0.92280 1.21215 1.01731 0.95776 0.97250 1.21628 0.93391 0.93123 0.98859 1.20273 1.05498 0.93783 0.95063 1.18196 0.77599 0.87390 0.83359 1.90744 1.51674 1.55584 1.44387 1.46301 1.69629 1.10893 1.09690 1.21792 1.00721 0.77181 1.00398 1.19336 0.97325 0.97924 0.87990 1.21039 1.48405 0.91701 0.94949 0.92164 1.25002 0.95068 0.98063 0.96160 1.69951 1.48142 1.33855 1.01359 0.86499 0.78006 0.84937 0.78046 1.20543 1.21159 1.19677 1.20959 0.90158 0.93508 0.96198 0.90000 0.86802 0.87561 0.85299 0.85063 0.84834 0.76876 0.92216 0.92246 0.95943 0.95906 0.92806 0.83238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -3.10 10.70 101.05 1.08 -2.02 16 2 S 1.34 9.73 14.18 -107.50 -1.52 8.20 16 3 O -0.86 -11.43 16.89 -35.23 -0.60 -12.03 16 4 C -0.47 -4.74 5.61 -39.64 -0.22 -4.96 16 5 C -0.04 -0.40 9.44 -39.49 -0.37 -0.77 16 6 C -0.14 -1.47 10.03 -39.64 -0.40 -1.87 16 7 C -0.05 -0.58 9.54 -39.19 -0.37 -0.95 16 8 C -0.14 -1.85 5.87 -104.97 -0.62 -2.47 16 9 C 0.55 9.02 7.77 -12.33 -0.10 8.93 16 10 O -0.54 -10.49 16.35 5.32 0.09 -10.40 16 11 N -0.72 -12.10 5.51 -61.24 -0.34 -12.44 16 12 C 0.12 2.48 5.61 -4.04 -0.02 2.46 16 13 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 14 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 18 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 C 0.01 0.13 9.30 -39.19 -0.36 -0.24 16 23 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 24 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.11 0.52 8.14 -51.92 -0.42 0.10 16 26 H 0.13 1.43 7.44 -52.49 -0.39 1.04 16 27 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 28 H 0.13 1.31 6.41 -52.49 -0.34 0.97 16 29 H 0.40 5.79 6.51 -40.82 -0.27 5.52 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.15 1.31 7.65 -52.49 -0.40 0.91 16 LS Contribution 319.71 15.07 4.82 4.82 Total: -1.00 -36.17 319.71 -8.09 -44.26 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.32 Total: 1.31 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -1.94 Total: -14.73 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.40 Total: -37.47 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.51 Total: -22.43 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 9.73 SS G_CDS: -1.52 Total: 8.20 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.17 -8.09 -44.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613718488.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.791 kcal (2) G-P(sol) polarization free energy of solvation -36.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds