Wall clock time and date at job start Tue Mar 31 2020 05:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42105 * 109.46988 * 2 1 4 4 C 1.76197 * 103.00066 * 250.94469 * 2 1 3 5 5 C 1.38394 * 119.92658 * 89.99757 * 4 2 1 6 6 C 1.38330 * 120.29020 * 179.97438 * 5 4 2 7 7 C 1.37985 * 120.14757 * 0.02562 * 6 5 4 8 8 C 1.39548 * 119.85106 * 0.02562 * 7 6 5 9 9 C 1.47846 * 120.14462 * 180.02562 * 8 7 6 10 10 O 1.21553 * 120.00368 * 180.02562 * 9 8 7 11 11 N 1.34783 * 119.99708 * 359.97438 * 9 8 7 12 12 C 1.46505 * 119.99662 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46681 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.46785 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99952 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00041 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99585 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00028 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47330 * 90.00017 * 18 16 14 20 20 H 1.48505 * 109.46844 * 210.00128 * 18 16 14 21 21 H 1.48504 * 109.47001 * 329.99711 * 18 16 14 22 22 C 1.37933 * 119.92995 * 269.72719 * 4 2 1 23 23 H 1.09000 * 109.46905 * 49.05257 * 1 2 3 24 24 H 1.08994 * 109.47180 * 169.05162 * 1 2 3 25 25 H 1.09001 * 109.47115 * 289.05867 * 1 2 3 26 26 H 1.07997 * 119.85054 * 0.02562 * 5 4 2 27 27 H 1.08003 * 119.92764 * 180.02562 * 6 5 4 28 28 H 1.07998 * 120.07082 * 180.02562 * 7 6 5 29 29 H 0.96996 * 119.99965 * 0.02562 * 11 9 8 30 30 H 1.09003 * 109.46779 * 299.99963 * 12 11 9 31 31 H 1.08997 * 109.47355 * 60.00136 * 12 11 9 32 32 H 1.09003 * 109.46923 * 299.99189 * 13 12 11 33 33 H 1.08997 * 109.47676 * 59.99645 * 13 12 11 34 34 H 0.96998 * 119.99633 * 179.97438 * 17 16 14 35 35 H 1.08000 * 120.07371 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3398 0.0000 4 6 2.2104 -0.5605 -1.6227 5 6 2.3657 0.3535 -2.6502 6 6 2.6774 -0.0782 -3.9269 7 6 2.8351 -1.4246 -4.1840 8 6 2.6788 -2.3516 -3.1527 9 6 2.8468 -3.7959 -3.4207 10 8 2.7097 -4.6011 -2.5206 11 7 3.1510 -4.2196 -4.6635 12 6 3.3169 -5.6508 -4.9292 13 6 3.6570 -5.8591 -6.4064 14 6 3.8283 -7.3312 -6.6796 15 1 3.7072 -8.0466 -5.8796 16 6 4.1396 -7.7648 -7.9509 17 7 4.2875 -6.8935 -8.9249 18 14 4.3512 -9.5895 -8.2897 19 1 3.0435 -10.1757 -8.6785 20 1 5.3261 -9.7781 -9.3940 21 1 4.8525 -10.2653 -7.0661 22 6 2.3708 -1.9089 -1.8651 23 1 -0.3633 0.6735 -0.7762 24 1 -0.3633 -1.0089 -0.1952 25 1 -0.3633 0.3356 0.9713 26 1 2.2438 1.4085 -2.4541 27 1 2.7976 0.6403 -4.7243 28 1 3.0788 -1.7603 -5.1811 29 1 3.2601 -3.5771 -5.3819 30 1 4.1248 -6.0437 -4.3118 31 1 2.3908 -6.1742 -4.6919 32 1 2.8493 -5.4662 -7.0240 33 1 4.5832 -5.3357 -6.6434 34 1 4.5069 -7.1985 -9.8192 35 1 2.2541 -2.6208 -1.0614 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613718488.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:22 Heat of formation + Delta-G solvation = -83.968640 kcal Electronic energy + Delta-G solvation = -18519.804108 eV Core-core repulsion = 15415.008338 eV Total energy + Delta-G solvation = -3104.795770 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22136 -39.33530 -36.89491 -36.63938 -34.88556 -32.82364 -32.15987 -31.11848 -29.62043 -27.00365 -24.89417 -23.93993 -22.80151 -21.68017 -19.63519 -18.51965 -18.14298 -17.29132 -16.96382 -16.56607 -16.50050 -16.38343 -15.88596 -15.78599 -14.92223 -14.90849 -14.77617 -14.47210 -14.27414 -13.78027 -13.52558 -13.26092 -13.10244 -12.93213 -12.76598 -12.59620 -12.51153 -12.24488 -11.68227 -11.49154 -11.40313 -10.94279 -10.60544 -10.41935 -10.19990 -9.94494 -9.37497 -8.24044 -6.34295 -0.39337 0.02246 0.87624 1.43062 1.43284 1.54754 1.62114 1.86952 2.17865 2.44406 2.67299 2.94720 3.11235 3.58599 3.80108 3.96639 4.08841 4.29713 4.36236 4.41507 4.50391 4.53447 4.59009 4.81880 4.85968 5.05583 5.15503 5.17858 5.18265 5.25492 5.47494 5.57873 5.70467 5.78719 6.15840 6.54773 6.79250 7.16730 7.35257 8.87851 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.046109 B = 0.002802 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.111205 B = 9991.911890 C =10411.976595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.497 4.497 2 S 1.397 4.603 3 O -0.917 6.917 4 C -0.475 4.475 5 C -0.047 4.047 6 C -0.140 4.140 7 C -0.053 4.053 8 C -0.161 4.161 9 C 0.552 3.448 10 O -0.575 6.575 11 N -0.714 5.714 12 C 0.140 3.860 13 C 0.021 3.979 14 C -0.546 4.546 15 H 0.061 0.939 16 C 0.006 3.994 17 N -0.928 5.928 18 Si 0.965 3.035 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.265 1.265 22 C 0.015 3.985 23 H 0.067 0.933 24 H 0.134 0.866 25 H 0.125 0.875 26 H 0.127 0.873 27 H 0.154 0.846 28 H 0.145 0.855 29 H 0.408 0.592 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.008 0.992 33 H 0.008 0.992 34 H 0.265 0.735 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.483 13.825 16.152 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.594 4.406 3 O -0.913 6.913 4 C -0.570 4.570 5 C -0.066 4.066 6 C -0.159 4.159 7 C -0.072 4.072 8 C -0.166 4.166 9 C 0.340 3.660 10 O -0.457 6.457 11 N -0.365 5.365 12 C 0.017 3.983 13 C -0.016 4.016 14 C -0.584 4.584 15 H 0.079 0.921 16 C -0.192 4.192 17 N -0.567 5.567 18 Si 0.789 3.211 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.189 1.189 22 C -0.005 4.005 23 H 0.086 0.914 24 H 0.153 0.847 25 H 0.143 0.857 26 H 0.145 0.855 27 H 0.172 0.828 28 H 0.163 0.837 29 H 0.245 0.755 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.906 13.520 17.294 22.732 hybrid contribution -0.574 0.739 -2.863 3.012 sum -6.480 14.259 14.431 21.297 Atomic orbital electron populations 1.27750 1.20478 1.09327 1.07942 1.69065 0.86093 0.96410 0.89029 1.92974 1.75642 1.40427 1.82263 1.27947 1.12668 0.98767 1.17608 1.21491 0.92431 0.99754 0.92946 1.21451 1.00937 0.95776 0.97750 1.21773 0.93056 0.93291 0.99057 1.20089 1.08096 0.91694 0.96672 1.18634 0.76276 0.88726 0.82368 1.90719 1.53024 1.56830 1.45112 1.46106 1.70082 1.09566 1.10706 1.21291 0.99913 0.79404 0.97696 1.19150 0.95990 0.96458 0.90040 1.21478 1.48378 0.93245 0.95298 0.92059 1.25874 0.94663 1.02711 0.95977 1.70057 1.48927 1.35938 1.01802 0.85446 0.78183 0.79389 0.78056 1.19786 1.20696 1.18906 1.21180 0.89191 0.94192 0.95935 0.91371 0.84727 0.85694 0.85490 0.82817 0.83699 0.75547 0.93023 0.92962 0.97333 0.97350 0.92581 0.81291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -4.90 10.70 113.37 1.21 -3.69 16 2 S 1.40 17.91 14.18 -56.49 -0.80 17.11 16 3 O -0.92 -23.59 16.89 -148.98 -2.52 -26.11 16 4 C -0.47 -8.76 5.61 22.23 0.12 -8.64 16 5 C -0.05 -0.97 9.44 22.33 0.21 -0.76 16 6 C -0.14 -2.70 10.03 22.23 0.22 -2.48 16 7 C -0.05 -1.13 9.54 22.53 0.21 -0.92 16 8 C -0.16 -4.04 5.87 -20.09 -0.12 -4.15 16 9 C 0.55 17.86 7.77 86.79 0.67 18.54 16 10 O -0.58 -21.93 16.35 -3.88 -0.06 -22.00 16 11 N -0.71 -24.05 5.51 -465.95 -2.57 -26.61 16 12 C 0.14 5.81 5.61 86.38 0.48 6.30 16 13 C 0.02 1.04 5.09 29.85 0.15 1.19 16 14 C -0.55 -29.85 9.11 25.60 0.23 -29.62 16 15 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 16 C 0.01 0.36 5.46 84.66 0.46 0.82 16 17 N -0.93 -53.75 13.29 21.45 0.28 -53.47 16 18 Si 0.96 42.91 29.54 68.60 2.03 44.94 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 22 C 0.01 0.30 9.30 22.53 0.21 0.51 16 23 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.13 2.70 7.44 -2.91 -0.02 2.68 16 27 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 28 H 0.15 2.66 6.41 -2.91 -0.02 2.64 16 29 H 0.41 11.79 6.51 -92.71 -0.60 11.19 16 30 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.17 2.63 7.65 -2.91 -0.02 2.61 16 Total: -1.00 -77.25 319.71 0.95 -76.30 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.50 Total: 12.74 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: 4.08 Total: -22.92 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -2.28 Total: -80.08 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: -2.58 Total: -48.10 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 17.91 SS G_CDS: -0.80 Total: 17.11 kcal Total: -77.25 0.95 -76.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613718488.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.667 kcal (2) G-P(sol) polarization free energy of solvation -77.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds