Wall clock time and date at job start Tue Mar 31 2020 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86795 * 119.99930 * 2 1 4 4 H 1.48504 * 109.47313 * 239.99621 * 3 2 1 5 5 H 1.48497 * 109.47299 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47353 * 119.99241 * 3 2 1 7 7 C 1.40052 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99820 * 180.02562 * 7 2 1 9 9 C 1.46376 * 120.00017 * 0.02562 * 7 2 1 10 10 O 1.21690 * 119.99759 * 359.97438 * 9 7 2 11 11 N 1.34768 * 119.99806 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99811 * 179.97438 * 11 9 7 13 13 H 1.09005 * 112.85469 * 336.19645 * 12 11 9 14 14 C 1.53779 * 113.61423 * 107.50424 * 12 11 9 15 15 C 1.53778 * 87.08539 * 89.11635 * 14 12 11 16 16 H 1.08995 * 113.69311 * 270.87501 * 15 14 12 17 17 C 1.50700 * 113.61628 * 139.97826 * 15 14 12 18 18 C 1.38224 * 119.99213 * 322.53065 * 17 15 14 19 19 C 1.38187 * 120.05295 * 179.97438 * 18 17 15 20 20 C 1.38492 * 120.02416 * 0.02562 * 19 18 17 21 21 F 1.35099 * 120.00943 * 179.97438 * 20 19 18 22 22 C 1.38397 * 119.97529 * 359.72914 * 20 19 18 23 23 C 1.38445 * 119.94721 * 0.52975 * 22 20 19 24 24 F 1.35104 * 120.01039 * 179.74070 * 23 22 20 25 25 C 1.53781 * 87.07927 * 25.43559 * 15 14 12 26 26 H 0.96996 * 120.00314 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00208 * 0.02562 * 11 9 7 28 28 H 1.08996 * 113.61629 * 334.56513 * 14 12 11 29 29 H 1.09002 * 113.61420 * 203.66581 * 14 12 11 30 30 H 1.08009 * 119.97191 * 359.97414 * 18 17 15 31 31 H 1.08000 * 119.98636 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.03007 * 180.27174 * 22 20 19 33 33 H 1.08994 * 113.62118 * 89.12058 * 25 15 14 34 34 H 1.09005 * 113.61519 * 219.94049 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0943 1.6965 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6476 0.0005 12 6 1.2165 -4.9164 0.0011 13 1 0.2091 -4.8234 0.4069 14 6 1.2750 -5.6620 -1.3425 15 6 2.5539 -6.3389 -0.8217 16 1 3.4653 -5.7850 -1.0465 17 6 2.6530 -7.7992 -1.1805 18 6 1.5193 -8.5899 -1.1776 19 6 1.6087 -9.9290 -1.5069 20 6 2.8348 -10.4804 -1.8397 21 9 2.9219 -11.7897 -2.1611 22 6 3.9698 -9.6885 -1.8479 23 6 3.8799 -8.3483 -1.5126 24 9 4.9879 -7.5753 -1.5151 25 6 2.0147 -6.0883 0.5965 26 1 -0.4850 0.8400 -0.0004 27 1 2.9190 -3.6476 0.0009 28 1 1.4445 -5.0080 -2.1978 29 1 0.4461 -6.3533 -1.4947 30 1 0.5628 -8.1608 -0.9177 31 1 0.7222 -10.5458 -1.5047 32 1 4.9256 -10.1166 -2.1115 33 1 1.3881 -6.8961 0.9745 34 1 2.7816 -5.7797 1.3070 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889081485.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:25 Heat of formation + Delta-G solvation = -88.952027 kcal Electronic energy + Delta-G solvation = -20903.054585 eV Core-core repulsion = 17244.202332 eV Total energy + Delta-G solvation = -3658.852253 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.22001 -49.11580 -40.02875 -38.19213 -36.34327 -32.67668 -31.94835 -31.01030 -30.14536 -26.42152 -25.42776 -24.79581 -23.35066 -21.86508 -20.30431 -18.51901 -18.44652 -17.47300 -17.13068 -16.17647 -16.16451 -15.85523 -15.47350 -15.26789 -15.01753 -14.60915 -14.42814 -13.95856 -13.72736 -13.07947 -12.85543 -12.57816 -12.45844 -12.29797 -12.11137 -11.67662 -11.48627 -11.27770 -10.99094 -10.77859 -10.47548 -10.26794 -10.24671 -9.86283 -9.28290 -8.86331 -8.69545 -7.65389 -7.54744 -6.20531 -4.66460 0.73819 0.78246 3.12607 3.15215 3.20190 3.21972 3.65637 4.08675 4.21370 4.34180 4.47138 4.53919 4.61405 4.71377 4.88957 4.95039 5.02521 5.30277 5.33393 5.56335 5.65826 5.74476 5.77581 5.86373 5.89920 5.97787 6.04106 6.31350 6.39210 6.46157 6.55672 6.63866 7.41703 7.90220 8.09082 8.31208 9.00565 9.50427 10.57923 10.76163 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.040489 B = 0.003256 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.385779 B = 8598.262567 C = 9093.120275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.579 6.579 11 N -0.748 5.748 12 C 0.142 3.858 13 H 0.093 0.907 14 C -0.147 4.147 15 C -0.078 4.078 16 H 0.102 0.898 17 C -0.101 4.101 18 C -0.061 4.061 19 C -0.160 4.160 20 C 0.116 3.884 21 F -0.136 7.136 22 C -0.191 4.191 23 C 0.129 3.871 24 F -0.128 7.128 25 C -0.139 4.139 26 H 0.269 0.731 27 H 0.381 0.619 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.086 0.914 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.073 -18.130 -2.461 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.360 3.640 10 O -0.462 6.462 11 N -0.401 5.401 12 C 0.034 3.966 13 H 0.111 0.889 14 C -0.187 4.187 15 C -0.096 4.096 16 H 0.120 0.880 17 C -0.102 4.102 18 C -0.079 4.079 19 C -0.179 4.179 20 C 0.097 3.903 21 F -0.114 7.114 22 C -0.211 4.211 23 C 0.110 3.890 24 F -0.107 7.107 25 C -0.178 4.178 26 H 0.080 0.920 27 H 0.212 0.788 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.165 0.835 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.105 0.895 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.029 -18.009 -2.465 18.860 hybrid contribution 1.330 0.520 -0.184 1.440 sum 6.359 -17.489 -2.649 18.797 Atomic orbital electron populations 1.70003 1.07051 1.27413 1.35157 1.25702 0.94623 1.00290 0.92599 0.86429 0.79815 0.81014 0.79460 1.19285 1.20564 1.19276 1.20852 0.93579 0.89396 1.54450 0.91463 1.18225 0.87228 0.82369 0.76161 1.90596 1.14061 1.86712 1.54846 1.45905 1.08305 1.04189 1.81743 1.21322 0.97271 0.84213 0.93812 0.88892 1.23631 0.95417 0.99198 1.00416 1.21598 1.00368 0.89417 0.98240 0.87981 1.20076 0.91529 0.97642 1.00930 1.20856 0.98732 0.91942 0.96334 1.21204 0.96761 0.96441 1.03480 1.17276 0.94000 0.78275 1.00767 1.91517 1.97026 1.32629 1.90247 1.20992 0.99780 0.93103 1.07230 1.17192 0.82931 0.88070 1.00849 1.91527 1.50820 1.74467 1.93871 1.23463 1.00220 0.99181 0.94900 0.92027 0.78753 0.90775 0.89940 0.83529 0.84073 0.83678 0.89550 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.82 11.83 55.55 0.66 -22.17 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 19.98 29.56 -169.99 -5.02 14.96 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 7 C -0.55 -15.23 9.54 -35.63 -0.34 -15.57 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 9 C 0.56 15.48 7.75 -12.99 -0.10 15.37 16 10 O -0.58 -18.39 14.62 5.20 0.08 -18.32 16 11 N -0.75 -16.10 5.26 -54.42 -0.29 -16.38 16 12 C 0.14 2.54 4.32 -67.12 -0.29 2.25 16 13 H 0.09 1.88 7.46 -51.93 -0.39 1.50 16 14 C -0.15 -2.21 7.25 -25.92 -0.19 -2.40 16 15 C -0.08 -1.02 3.78 -90.96 -0.34 -1.36 16 16 H 0.10 1.41 7.44 -51.93 -0.39 1.03 16 17 C -0.10 -1.16 5.29 -104.55 -0.55 -1.72 16 18 C -0.06 -0.59 8.61 -39.60 -0.34 -0.93 16 19 C -0.16 -1.45 10.02 -39.51 -0.40 -1.84 16 20 C 0.12 1.16 7.30 -39.43 -0.29 0.88 16 21 F -0.14 -1.40 17.27 2.25 0.04 -1.36 16 22 C -0.19 -1.96 10.01 -39.45 -0.39 -2.35 16 23 C 0.13 1.50 7.25 -39.43 -0.29 1.21 16 24 F -0.13 -1.62 16.36 2.25 0.04 -1.59 16 25 C -0.14 -1.88 7.29 -25.92 -0.19 -2.07 16 26 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 27 H 0.38 7.29 8.68 -40.82 -0.35 6.93 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.08 1.05 6.31 -51.93 -0.33 0.72 16 30 H 0.15 1.23 6.66 -52.48 -0.35 0.89 16 31 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.09 1.00 7.72 -51.93 -0.40 0.60 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 302.93 15.07 4.57 4.57 Total: -1.00 -32.97 302.93 -7.19 -40.15 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -3.44 Total: 6.34 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -3.81 Total: -6.19 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.37 Total: -38.55 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.08 Total: -18.32 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.95 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.97 -7.19 -40.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889081485.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.801 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds