Wall clock time and date at job start Tue Mar 31 2020 05:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86795 * 119.99930 * 2 1 4 4 H 1.48504 * 109.47313 * 239.99621 * 3 2 1 5 5 H 1.48497 * 109.47299 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47353 * 119.99241 * 3 2 1 7 7 C 1.40052 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99820 * 180.02562 * 7 2 1 9 9 C 1.46376 * 120.00017 * 0.02562 * 7 2 1 10 10 O 1.21690 * 119.99759 * 359.97438 * 9 7 2 11 11 N 1.34768 * 119.99806 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99811 * 179.97438 * 11 9 7 13 13 H 1.09005 * 112.85469 * 336.19645 * 12 11 9 14 14 C 1.53779 * 113.61423 * 107.50424 * 12 11 9 15 15 C 1.53778 * 87.08539 * 89.11635 * 14 12 11 16 16 H 1.08995 * 113.69311 * 270.87501 * 15 14 12 17 17 C 1.50700 * 113.61628 * 139.97826 * 15 14 12 18 18 C 1.38224 * 119.99213 * 322.53065 * 17 15 14 19 19 C 1.38187 * 120.05295 * 179.97438 * 18 17 15 20 20 C 1.38492 * 120.02416 * 0.02562 * 19 18 17 21 21 F 1.35099 * 120.00943 * 179.97438 * 20 19 18 22 22 C 1.38397 * 119.97529 * 359.72914 * 20 19 18 23 23 C 1.38445 * 119.94721 * 0.52975 * 22 20 19 24 24 F 1.35104 * 120.01039 * 179.74070 * 23 22 20 25 25 C 1.53781 * 87.07927 * 25.43559 * 15 14 12 26 26 H 0.96996 * 120.00314 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00208 * 0.02562 * 11 9 7 28 28 H 1.08996 * 113.61629 * 334.56513 * 14 12 11 29 29 H 1.09002 * 113.61420 * 203.66581 * 14 12 11 30 30 H 1.08009 * 119.97191 * 359.97414 * 18 17 15 31 31 H 1.08000 * 119.98636 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.03007 * 180.27174 * 22 20 19 33 33 H 1.08994 * 113.62118 * 89.12058 * 25 15 14 34 34 H 1.09005 * 113.61519 * 219.94049 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0943 1.6965 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6476 0.0005 12 6 1.2165 -4.9164 0.0011 13 1 0.2091 -4.8234 0.4069 14 6 1.2750 -5.6620 -1.3425 15 6 2.5539 -6.3389 -0.8217 16 1 3.4653 -5.7850 -1.0465 17 6 2.6530 -7.7992 -1.1805 18 6 1.5193 -8.5899 -1.1776 19 6 1.6087 -9.9290 -1.5069 20 6 2.8348 -10.4804 -1.8397 21 9 2.9219 -11.7897 -2.1611 22 6 3.9698 -9.6885 -1.8479 23 6 3.8799 -8.3483 -1.5126 24 9 4.9879 -7.5753 -1.5151 25 6 2.0147 -6.0883 0.5965 26 1 -0.4850 0.8400 -0.0004 27 1 2.9190 -3.6476 0.0009 28 1 1.4445 -5.0080 -2.1978 29 1 0.4461 -6.3533 -1.4947 30 1 0.5628 -8.1608 -0.9177 31 1 0.7222 -10.5458 -1.5047 32 1 4.9256 -10.1166 -2.1115 33 1 1.3881 -6.8961 0.9745 34 1 2.7816 -5.7797 1.3070 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889081485.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:24 Heat of formation + Delta-G solvation = -109.838067 kcal Electronic energy + Delta-G solvation = -20903.960271 eV Core-core repulsion = 17244.202332 eV Total energy + Delta-G solvation = -3659.757939 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.02639 -49.99606 -41.16403 -39.46729 -38.11729 -34.70007 -33.66849 -31.82621 -31.31068 -28.42071 -26.61836 -25.95912 -24.22083 -22.98611 -22.03973 -19.92493 -19.40689 -19.08505 -18.16247 -17.59382 -17.00248 -16.98026 -16.73829 -16.40651 -16.32416 -15.85025 -15.46404 -15.25863 -15.07787 -14.70885 -14.24286 -13.85872 -13.64229 -13.51372 -13.33383 -13.05079 -12.81713 -12.62662 -12.58023 -12.48408 -12.09073 -11.86883 -11.56380 -11.15071 -10.90988 -10.06194 -9.85502 -9.57081 -9.39199 -8.28458 -6.85042 -0.08203 0.01123 1.40681 1.43832 1.55424 2.25189 2.32601 2.47592 2.85472 3.07694 3.37962 3.53472 3.56448 3.57381 3.76047 3.83115 3.95255 4.11519 4.17405 4.26384 4.71670 4.76464 4.78017 4.88122 4.92186 4.96418 5.02387 5.09799 5.14020 5.28341 5.32325 5.42710 5.76678 5.89825 6.24886 6.36621 6.87559 7.56401 8.50879 8.68477 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.040489 B = 0.003256 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.385779 B = 8598.262567 C = 9093.120275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 0.997 3.003 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.541 3.459 10 O -0.630 6.630 11 N -0.738 5.738 12 C 0.117 3.883 13 H 0.063 0.937 14 C -0.139 4.139 15 C -0.062 4.062 16 H 0.092 0.908 17 C -0.111 4.111 18 C -0.058 4.058 19 C -0.149 4.149 20 C 0.112 3.888 21 F -0.137 7.137 22 C -0.190 4.190 23 C 0.114 3.886 24 F -0.139 7.139 25 C -0.118 4.118 26 H 0.274 0.726 27 H 0.393 0.607 28 H 0.050 0.950 29 H 0.109 0.891 30 H 0.163 0.837 31 H 0.168 0.832 32 H 0.158 0.842 33 H 0.114 0.886 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.236 -19.236 -2.508 20.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.186 4.186 3 Si 0.816 3.184 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.613 4.613 8 H 0.104 0.896 9 C 0.345 3.655 10 O -0.517 6.517 11 N -0.390 5.390 12 C 0.010 3.990 13 H 0.081 0.919 14 C -0.178 4.178 15 C -0.081 4.081 16 H 0.110 0.890 17 C -0.112 4.112 18 C -0.076 4.076 19 C -0.168 4.168 20 C 0.093 3.907 21 F -0.116 7.116 22 C -0.210 4.210 23 C 0.095 3.905 24 F -0.118 7.118 25 C -0.156 4.156 26 H 0.084 0.916 27 H 0.227 0.773 28 H 0.068 0.932 29 H 0.127 0.873 30 H 0.181 0.819 31 H 0.185 0.815 32 H 0.176 0.824 33 H 0.132 0.868 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.240 -19.178 -2.513 20.323 hybrid contribution 0.946 0.725 -0.186 1.207 sum 7.186 -18.453 -2.700 19.986 Atomic orbital electron populations 1.70171 1.09454 1.28988 1.36428 1.26947 0.95527 1.04886 0.91226 0.85087 0.78219 0.74860 0.80229 1.17971 1.19893 1.17859 1.21419 0.94704 0.90273 1.54886 0.89630 1.18547 0.86838 0.84277 0.75827 1.90546 1.16111 1.87879 1.57184 1.45532 1.08864 1.04251 1.80376 1.21607 0.96315 0.84084 0.96995 0.91875 1.23582 0.97687 0.98942 0.97601 1.21329 0.98779 0.90603 0.97371 0.88979 1.19948 0.92332 0.96617 1.02283 1.21029 0.98675 0.92112 0.95805 1.21469 0.97292 0.96270 1.01738 1.17417 0.94362 0.78203 1.00732 1.91520 1.97055 1.32727 1.90261 1.21118 1.00691 0.92562 1.06619 1.17332 0.82695 0.88600 1.01903 1.91498 1.51367 1.74828 1.94098 1.23378 0.99629 0.97331 0.95283 0.91563 0.77334 0.93157 0.87286 0.81935 0.81489 0.82394 0.86773 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.27 11.83 21.84 0.26 -50.02 16 2 C 0.03 1.64 5.50 85.31 0.47 2.11 16 3 Si 1.00 40.96 29.56 68.60 2.03 42.99 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 7 C -0.58 -32.69 9.54 24.83 0.24 -32.45 16 8 H 0.09 4.35 7.85 -2.91 -0.02 4.33 16 9 C 0.54 31.19 7.75 86.36 0.67 31.86 16 10 O -0.63 -41.91 14.62 -4.32 -0.06 -41.98 16 11 N -0.74 -32.53 5.26 -444.32 -2.34 -34.86 16 12 C 0.12 4.23 4.32 45.52 0.20 4.43 16 13 H 0.06 2.66 7.46 -2.38 -0.02 2.64 16 14 C -0.14 -4.11 7.25 31.12 0.23 -3.88 16 15 C -0.06 -1.56 3.78 -11.01 -0.04 -1.60 16 16 H 0.09 2.49 7.44 -2.39 -0.02 2.47 16 17 C -0.11 -2.33 5.29 -19.82 -0.10 -2.43 16 18 C -0.06 -0.96 8.61 22.25 0.19 -0.77 16 19 C -0.15 -2.18 10.02 22.32 0.22 -1.96 16 20 C 0.11 1.95 7.30 22.37 0.16 2.11 16 21 F -0.14 -2.48 17.27 44.97 0.78 -1.71 16 22 C -0.19 -3.50 10.01 22.36 0.22 -3.28 16 23 C 0.11 2.47 7.25 22.37 0.16 2.63 16 24 F -0.14 -3.40 16.36 44.97 0.74 -2.67 16 25 C -0.12 -3.01 7.29 31.12 0.23 -2.79 16 26 H 0.27 15.24 8.29 -92.71 -0.77 14.47 16 27 H 0.39 15.20 8.68 -92.71 -0.80 14.40 16 28 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.11 2.60 6.31 -2.39 -0.02 2.59 16 30 H 0.16 2.14 6.66 -2.91 -0.02 2.12 16 31 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 32 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.11 2.31 7.72 -2.39 -0.02 2.29 16 34 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 Total: -1.00 -74.51 302.93 4.59 -69.92 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.35 Total: 24.34 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 2.84 Total: -6.03 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -2.08 Total: -84.88 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -0.06 Total: -41.98 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 1.51 Total: -4.37 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -74.51 4.59 -69.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889081485.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.916 kcal (2) G-P(sol) polarization free energy of solvation -74.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds