Wall clock time and date at job start Tue Mar 31 2020 05:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00099 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00216 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.47039 * 300.00607 * 9 7 2 11 11 O 1.42907 * 109.46597 * 60.00310 * 9 7 2 12 12 C 1.53003 * 109.47202 * 180.02562 * 9 7 2 13 13 N 1.46896 * 109.46953 * 180.02562 * 12 9 7 14 14 C 1.47472 * 111.00342 * 91.52391 * 13 12 9 15 15 C 1.53517 * 87.93199 * 138.70469 * 14 13 12 16 16 C 1.47478 * 110.99750 * 187.49856 * 13 12 9 17 17 H 1.08998 * 113.47489 * 336.05644 * 16 13 12 18 18 C 1.50699 * 113.47746 * 106.53042 * 16 13 12 19 19 C 1.38239 * 119.99113 * 39.71813 * 18 16 13 20 20 C 1.38217 * 120.01401 * 179.72767 * 19 18 16 21 21 C 1.38348 * 119.98577 * 0.55147 * 20 19 18 22 22 Cl 1.73601 * 120.01118 * 179.74455 * 21 20 19 23 23 C 1.38350 * 119.97148 * 359.72854 * 21 20 19 24 24 C 1.38208 * 119.99149 * 359.97438 * 23 21 20 25 25 H 0.97000 * 119.99667 * 0.02562 * 1 2 3 26 26 H 0.96696 * 114.00317 * 60.00571 * 11 9 7 27 27 H 1.09008 * 109.46754 * 300.00121 * 12 9 7 28 28 H 1.08996 * 109.46647 * 60.00168 * 12 9 7 29 29 H 1.09005 * 113.47879 * 253.46488 * 14 13 12 30 30 H 1.09002 * 113.47477 * 23.93801 * 14 13 12 31 31 H 1.08998 * 114.17497 * 87.62405 * 15 14 13 32 32 H 1.09002 * 114.16588 * 220.14185 * 15 14 13 33 33 H 1.08002 * 119.99329 * 0.02562 * 19 18 16 34 34 H 1.08003 * 120.00483 * 180.27635 * 20 19 18 35 35 H 1.08009 * 120.00493 * 180.02562 * 23 21 20 36 36 H 1.08005 * 119.99526 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 1 3.8746 -0.6808 -0.8905 11 8 3.9883 -0.5197 1.1662 12 6 4.0216 -2.6366 0.0001 13 7 5.4905 -2.6366 0.0001 14 6 6.0191 -2.6731 1.3764 15 6 7.0753 -3.6728 0.8849 16 6 6.0190 -4.0017 -0.1794 17 1 5.3215 -4.7811 0.1272 18 6 6.6014 -4.2448 -1.5479 19 6 7.3479 -3.2593 -2.1663 20 6 7.8870 -3.4839 -3.4191 21 6 7.6697 -4.6910 -4.0590 22 17 8.3409 -4.9713 -5.6353 23 6 6.9176 -5.6748 -3.4421 24 6 6.3842 -5.4514 -2.1868 25 1 -0.4849 0.8401 -0.0004 26 1 3.7033 -0.9227 1.9977 27 1 3.6585 -3.1502 0.8904 28 1 3.6579 -3.1505 -0.8897 29 1 6.4403 -1.7230 1.7052 30 1 5.3216 -3.0981 2.0982 31 1 7.9787 -3.2091 0.4889 32 1 7.2789 -4.4857 1.5820 33 1 7.5140 -2.3154 -1.6684 34 1 8.4739 -2.7154 -3.9001 35 1 6.7480 -6.6176 -3.9410 36 1 5.7968 -6.2192 -1.7053 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929786269.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:28 Heat of formation + Delta-G solvation = -15.121385 kcal Electronic energy + Delta-G solvation = -19489.036603 eV Core-core repulsion = 16385.182567 eV Total energy + Delta-G solvation = -3103.854036 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.55700 -39.65323 -37.77539 -37.29779 -34.42442 -32.57325 -32.01579 -31.60053 -29.01370 -26.51537 -25.45700 -23.83089 -22.74304 -22.20422 -20.47948 -19.33862 -18.22732 -17.06730 -16.83691 -16.63370 -16.48087 -16.05324 -15.75238 -15.26273 -15.08848 -14.70309 -14.38476 -14.26333 -13.85529 -13.63139 -13.18438 -13.04348 -12.85218 -12.65622 -12.50682 -12.39757 -12.05310 -12.00860 -11.75120 -11.59723 -11.37525 -11.08472 -10.81792 -10.16667 -9.95309 -9.72542 -9.44096 -8.36606 -6.51082 0.16330 0.38646 1.16861 1.39803 1.44595 1.74965 2.43487 2.61170 3.01921 3.20297 3.57885 3.84165 3.89610 4.00542 4.04032 4.11028 4.27817 4.36000 4.43816 4.47464 4.51241 4.63796 4.76623 4.89625 4.98171 5.05751 5.07036 5.17323 5.29185 5.34520 5.41446 5.45461 5.55442 5.72128 5.88512 6.07221 6.23135 6.61466 7.19779 7.34866 8.77628 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.020736 B = 0.004148 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.976438 B = 6749.092288 C = 7346.994266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.030 3.970 3 Si 0.939 3.061 4 H -0.290 1.290 5 H -0.297 1.297 6 H -0.203 1.203 7 C -0.567 4.567 8 H 0.036 0.964 9 C 0.215 3.785 10 H 0.044 0.956 11 O -0.574 6.574 12 C 0.022 3.978 13 N -0.473 5.473 14 C 0.005 3.995 15 C -0.119 4.119 16 C 0.057 3.943 17 H 0.089 0.911 18 C -0.070 4.070 19 C -0.086 4.086 20 C -0.121 4.121 21 C -0.047 4.047 22 Cl -0.076 7.076 23 C -0.116 4.116 24 C -0.106 4.106 25 H 0.267 0.733 26 H 0.363 0.637 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.221 -11.706 -2.273 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.170 4.170 3 Si 0.763 3.237 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.125 1.125 7 C -0.605 4.605 8 H 0.054 0.946 9 C 0.157 3.843 10 H 0.062 0.938 11 O -0.380 6.380 12 C -0.107 4.107 13 N -0.195 5.195 14 C -0.123 4.123 15 C -0.157 4.157 16 C -0.053 4.053 17 H 0.107 0.893 18 C -0.070 4.070 19 C -0.105 4.105 20 C -0.140 4.140 21 C -0.074 4.074 22 Cl -0.047 7.047 23 C -0.135 4.135 24 C -0.124 4.124 25 H 0.075 0.925 26 H 0.210 0.790 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.151 0.849 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 19.562 -10.705 -3.315 22.545 hybrid contribution -1.257 -0.174 0.389 1.327 sum 18.306 -10.879 -2.926 21.494 Atomic orbital electron populations 1.70083 1.08492 1.28386 1.50983 1.25834 0.95221 1.03574 0.92361 0.85988 0.82029 0.77446 0.78196 1.21656 1.22390 1.12486 1.21880 0.92549 0.93247 1.52833 0.94604 1.19373 0.89903 0.89356 0.85666 0.93838 1.86630 1.77326 1.57688 1.16397 1.22984 0.88958 0.98416 1.00293 1.68881 1.08509 1.22182 1.19938 1.23741 0.97108 1.00611 0.90862 1.23219 0.96587 0.99207 0.96669 1.22435 0.97478 0.92713 0.92629 0.89286 1.19861 0.97188 0.94150 0.95828 1.21055 0.95953 0.99314 0.94179 1.21228 1.01084 0.96214 0.95437 1.21074 1.01348 0.96819 0.88141 1.98356 1.84364 1.96372 1.25583 1.21212 0.97447 0.99376 0.95456 1.21253 0.99431 0.97413 0.94335 0.92465 0.79007 0.93808 0.92455 0.89899 0.90973 0.88634 0.88324 0.84873 0.84102 0.83390 0.83473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.60 13.96 21.45 0.30 -58.30 16 2 C 0.03 1.73 5.47 84.65 0.46 2.19 16 3 Si 0.94 45.66 26.99 68.60 1.85 47.51 16 4 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.20 -9.37 5.30 99.48 0.53 -8.84 16 7 C -0.57 -31.74 9.34 25.60 0.24 -31.50 16 8 H 0.04 2.20 7.99 -2.91 -0.02 2.17 16 9 C 0.22 9.83 2.58 29.85 0.08 9.91 16 10 H 0.04 2.15 7.57 -2.39 -0.02 2.13 16 11 O -0.57 -24.26 9.15 -148.98 -1.36 -25.62 16 12 C 0.02 0.83 4.49 86.30 0.39 1.22 16 13 N -0.47 -14.35 5.56 -906.69 -5.05 -19.39 16 14 C 0.01 0.13 6.79 83.58 0.57 0.70 16 15 C -0.12 -2.28 7.91 30.94 0.24 -2.04 16 16 C 0.06 1.34 3.27 41.44 0.14 1.47 16 17 H 0.09 1.99 7.85 -2.39 -0.02 1.97 16 18 C -0.07 -1.64 5.38 -19.86 -0.11 -1.75 16 19 C -0.09 -2.10 8.88 22.27 0.20 -1.90 16 20 C -0.12 -2.73 9.83 22.29 0.22 -2.51 16 21 C -0.05 -1.03 6.32 22.32 0.14 -0.89 16 22 Cl -0.08 -1.53 28.96 -2.72 -0.08 -1.61 16 23 C -0.12 -2.35 9.83 22.29 0.22 -2.13 16 24 C -0.11 -2.19 9.71 22.26 0.22 -1.97 16 25 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 26 H 0.36 13.49 9.04 -74.06 -0.67 12.82 16 27 H 0.04 1.57 7.35 -2.38 -0.02 1.55 16 28 H 0.06 2.26 8.11 -2.39 -0.02 2.24 16 29 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.07 1.69 7.44 -2.39 -0.02 1.68 16 31 H 0.10 1.78 7.67 -2.39 -0.02 1.77 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.13 3.32 7.83 -2.91 -0.02 3.30 16 34 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 35 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.15 2.41 8.05 -2.91 -0.02 2.38 16 Total: -1.00 -65.93 313.54 -1.10 -67.03 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.24 Total: 19.58 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 3.00 Total: -29.21 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -4.75 Total: -77.69 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -1.36 Total: -25.62 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.85 Total: 47.51 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -65.93 -1.10 -67.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929786269.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.911 kcal (2) G-P(sol) polarization free energy of solvation -65.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds