Wall clock time and date at job start Tue Mar 31 2020 05:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00173 * 2 1 4 4 H 1.48499 * 109.46821 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46996 * 300.00353 * 3 2 1 6 6 H 1.48495 * 109.46665 * 60.00035 * 3 2 1 7 7 C 1.37876 * 119.99600 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46613 * 300.00022 * 9 7 2 11 11 O 1.42905 * 109.46996 * 59.99611 * 9 7 2 12 12 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 13 13 N 1.46899 * 109.47254 * 179.97438 * 12 9 7 14 14 C 1.47477 * 111.00047 * 265.97286 * 13 12 9 15 15 C 1.53513 * 87.92932 * 221.29743 * 14 13 12 16 16 C 1.47481 * 111.00017 * 169.99694 * 13 12 9 17 17 H 1.09002 * 113.47432 * 23.87859 * 16 13 12 18 18 C 1.50696 * 113.48019 * 253.47314 * 16 13 12 19 19 C 1.38245 * 119.98338 * 319.72811 * 18 16 13 20 20 C 1.38214 * 120.01044 * 179.72925 * 19 18 16 21 21 C 1.38350 * 119.98671 * 0.53924 * 20 19 18 22 22 Cl 1.73599 * 120.01378 * 179.75069 * 21 20 19 23 23 C 1.38358 * 119.97436 * 359.73196 * 21 20 19 24 24 C 1.38211 * 119.98510 * 359.97438 * 23 21 20 25 25 H 0.97006 * 120.00212 * 359.97438 * 1 2 3 26 26 H 0.96696 * 114.00036 * 60.00342 * 11 9 7 27 27 H 1.09001 * 109.46832 * 299.99964 * 12 9 7 28 28 H 1.09002 * 109.47153 * 59.99773 * 12 9 7 29 29 H 1.09000 * 113.47846 * 336.05901 * 14 13 12 30 30 H 1.08998 * 113.47506 * 106.53321 * 14 13 12 31 31 H 1.09005 * 114.16820 * 272.37471 * 15 14 13 32 32 H 1.09003 * 114.17198 * 139.67330 * 15 14 13 33 33 H 1.08000 * 119.99738 * 359.97438 * 19 18 16 34 34 H 1.08003 * 120.00979 * 180.27521 * 20 19 18 35 35 H 1.07999 * 120.00408 * 180.02562 * 23 21 20 36 36 H 1.08001 * 119.99402 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6239 -2.5574 0.8880 11 8 0.4297 -2.5740 -1.1689 12 6 2.2451 -3.6621 -0.0027 13 7 1.5105 -4.9343 -0.0033 14 6 1.3305 -5.4412 1.3699 15 6 1.6486 -6.8442 0.8342 16 6 2.4204 -6.0698 -0.2434 17 1 3.4555 -5.8617 0.0276 18 6 2.2874 -6.6648 -1.6216 19 6 1.0368 -6.8155 -2.1912 20 6 0.9145 -7.3560 -3.4574 21 6 2.0431 -7.7564 -4.1503 22 17 1.8898 -8.4412 -5.7381 23 6 3.2940 -7.6104 -3.5774 24 6 3.4155 -7.0643 -2.3136 25 1 -0.4851 0.8401 0.0004 26 1 0.9221 -2.5281 -1.9998 27 1 2.8717 -3.6036 -0.8927 28 1 2.8718 -3.6052 0.8873 29 1 2.0745 -5.0657 2.0725 30 1 0.3105 -5.3388 1.7403 31 1 0.7804 -7.3860 0.4588 32 1 2.2794 -7.4411 1.4929 33 1 0.1555 -6.5073 -1.6484 34 1 -0.0621 -7.4696 -3.9042 35 1 4.1754 -7.9225 -4.1180 36 1 4.3919 -6.9499 -1.8664 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929786270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:32 Heat of formation + Delta-G solvation = 1.696214 kcal Electronic energy + Delta-G solvation = -19463.978684 eV Core-core repulsion = 16360.853914 eV Total energy + Delta-G solvation = -3103.124770 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40137 -38.56743 -36.43798 -35.47632 -32.08093 -31.34407 -31.02753 -30.07659 -26.91708 -25.46825 -23.80603 -22.85183 -21.75996 -20.45691 -19.35769 -17.25037 -17.02834 -15.84416 -15.45238 -14.95145 -14.75552 -14.58259 -14.31619 -13.89220 -13.53653 -13.44931 -13.13619 -12.80526 -12.57240 -12.02382 -11.69738 -11.53763 -11.43904 -11.21232 -10.97710 -10.94133 -10.81020 -10.66330 -10.52398 -10.18926 -10.01485 -9.09129 -8.98631 -8.59811 -8.53407 -8.41067 -7.92404 -6.00028 -4.18831 1.15273 1.35296 2.10961 3.26148 3.34467 3.37270 3.61429 4.31289 4.46083 4.62383 4.81049 4.90002 4.93871 5.12897 5.27416 5.38280 5.42686 5.53512 5.61189 5.71565 5.74576 5.81102 6.01658 6.04780 6.12437 6.20738 6.26913 6.35106 6.49873 6.65096 6.73854 6.84877 6.90356 7.51738 7.75207 7.87387 8.19985 8.85182 9.46747 9.63138 11.04000 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.020284 B = 0.004059 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.092272 B = 6896.729896 C = 7599.095417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.080 3.920 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.575 4.575 8 H 0.054 0.946 9 C 0.244 3.756 10 H 0.052 0.948 11 O -0.553 6.553 12 C -0.005 4.005 13 N -0.445 5.445 14 C -0.002 4.002 15 C -0.136 4.136 16 C 0.054 3.946 17 H 0.080 0.920 18 C -0.054 4.054 19 C -0.071 4.071 20 C -0.114 4.114 21 C -0.039 4.039 22 Cl -0.083 7.083 23 C -0.116 4.116 24 C -0.105 4.105 25 H 0.260 0.740 26 H 0.341 0.659 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.243 -17.185 -3.545 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.614 4.614 8 H 0.072 0.928 9 C 0.186 3.814 10 H 0.070 0.930 11 O -0.355 6.355 12 C -0.133 4.133 13 N -0.166 5.166 14 C -0.131 4.131 15 C -0.174 4.174 16 C -0.056 4.056 17 H 0.098 0.902 18 C -0.055 4.055 19 C -0.089 4.089 20 C -0.133 4.133 21 C -0.065 4.065 22 Cl -0.054 7.054 23 C -0.135 4.135 24 C -0.124 4.124 25 H 0.069 0.931 26 H 0.184 0.816 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.007 -17.011 -3.652 17.854 hybrid contribution 1.842 1.100 -0.052 2.146 sum 5.849 -15.911 -3.703 17.352 Atomic orbital electron populations 1.70095 1.05908 1.26266 1.47044 1.25018 0.94664 0.99045 0.93846 0.86641 0.80192 0.83969 0.77723 1.19772 1.20836 1.20877 1.21703 0.93110 0.91707 1.54861 0.92798 1.19172 0.87645 0.88187 0.86438 0.92975 1.86567 1.37706 1.96278 1.14914 1.23643 0.97825 0.91879 0.99962 1.69059 1.31557 1.00465 1.15564 1.23761 1.02749 0.93943 0.92631 1.23256 1.00397 0.96542 0.97182 1.22360 0.97266 0.94335 0.91602 0.90238 1.19748 0.93054 0.97143 0.95554 1.21058 0.98320 0.95681 0.93876 1.21088 0.97613 0.99512 0.95038 1.20912 0.95361 1.02816 0.87421 1.98352 1.98295 1.83634 1.25123 1.20922 0.95825 1.00960 0.95786 1.20992 0.98619 0.98844 0.93962 0.93052 0.81630 0.92061 0.94290 0.91529 0.89696 0.88943 0.90972 0.84140 0.85124 0.85361 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.53 12.84 55.43 0.71 -24.82 16 2 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.58 -15.80 8.76 -34.44 -0.30 -16.10 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.24 6.18 3.10 -27.89 -0.09 6.09 16 10 H 0.05 1.47 8.14 -51.93 -0.42 1.05 16 11 O -0.55 -14.58 12.60 -35.23 -0.44 -15.02 16 12 C 0.00 -0.10 4.42 -3.83 -0.02 -0.11 16 13 N -0.44 -7.65 5.50 -237.91 -1.31 -8.96 16 14 C 0.00 -0.03 7.71 -7.54 -0.06 -0.08 16 15 C -0.14 -1.61 7.91 -26.20 -0.21 -1.82 16 16 C 0.05 0.74 3.25 -72.58 -0.24 0.50 16 17 H 0.08 1.04 7.85 -51.93 -0.41 0.63 16 18 C -0.05 -0.73 5.39 -104.62 -0.56 -1.29 16 19 C -0.07 -0.96 8.86 -39.59 -0.35 -1.31 16 20 C -0.11 -1.43 9.83 -39.55 -0.39 -1.82 16 21 C -0.04 -0.47 6.32 -39.50 -0.25 -0.72 16 22 Cl -0.08 -0.93 28.96 -51.86 -1.50 -2.43 16 23 C -0.12 -1.34 9.83 -39.55 -0.39 -1.73 16 24 C -0.11 -1.25 9.71 -39.59 -0.38 -1.64 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.34 8.21 9.04 45.56 0.41 8.62 16 27 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 28 H 0.04 0.76 7.30 -51.93 -0.38 0.38 16 29 H 0.07 0.94 7.42 -51.93 -0.39 0.56 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.09 1.06 7.62 -51.93 -0.40 0.67 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.14 1.99 7.81 -52.49 -0.41 1.58 16 34 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.13 1.26 8.05 -52.49 -0.42 0.83 16 LS Contribution 320.99 15.07 4.84 4.84 Total: -1.00 -30.46 320.99 -10.12 -40.58 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -4.06 Total: 7.54 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -3.33 Total: -17.88 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: -0.60 Total: -33.78 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.44 Total: -15.02 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.46 -10.12 -40.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929786270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.274 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds