Wall clock time and date at job start Tue Mar 31 2020 05:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00173 * 2 1 4 4 H 1.48499 * 109.46821 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46996 * 300.00353 * 3 2 1 6 6 H 1.48495 * 109.46665 * 60.00035 * 3 2 1 7 7 C 1.37876 * 119.99600 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46613 * 300.00022 * 9 7 2 11 11 O 1.42905 * 109.46996 * 59.99611 * 9 7 2 12 12 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 13 13 N 1.46899 * 109.47254 * 179.97438 * 12 9 7 14 14 C 1.47477 * 111.00047 * 265.97286 * 13 12 9 15 15 C 1.53513 * 87.92932 * 221.29743 * 14 13 12 16 16 C 1.47481 * 111.00017 * 169.99694 * 13 12 9 17 17 H 1.09002 * 113.47432 * 23.87859 * 16 13 12 18 18 C 1.50696 * 113.48019 * 253.47314 * 16 13 12 19 19 C 1.38245 * 119.98338 * 319.72811 * 18 16 13 20 20 C 1.38214 * 120.01044 * 179.72925 * 19 18 16 21 21 C 1.38350 * 119.98671 * 0.53924 * 20 19 18 22 22 Cl 1.73599 * 120.01378 * 179.75069 * 21 20 19 23 23 C 1.38358 * 119.97436 * 359.73196 * 21 20 19 24 24 C 1.38211 * 119.98510 * 359.97438 * 23 21 20 25 25 H 0.97006 * 120.00212 * 359.97438 * 1 2 3 26 26 H 0.96696 * 114.00036 * 60.00342 * 11 9 7 27 27 H 1.09001 * 109.46832 * 299.99964 * 12 9 7 28 28 H 1.09002 * 109.47153 * 59.99773 * 12 9 7 29 29 H 1.09000 * 113.47846 * 336.05901 * 14 13 12 30 30 H 1.08998 * 113.47506 * 106.53321 * 14 13 12 31 31 H 1.09005 * 114.16820 * 272.37471 * 15 14 13 32 32 H 1.09003 * 114.17198 * 139.67330 * 15 14 13 33 33 H 1.08000 * 119.99738 * 359.97438 * 19 18 16 34 34 H 1.08003 * 120.00979 * 180.27521 * 20 19 18 35 35 H 1.07999 * 120.00408 * 180.02562 * 23 21 20 36 36 H 1.08001 * 119.99402 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6239 -2.5574 0.8880 11 8 0.4297 -2.5740 -1.1689 12 6 2.2451 -3.6621 -0.0027 13 7 1.5105 -4.9343 -0.0033 14 6 1.3305 -5.4412 1.3699 15 6 1.6486 -6.8442 0.8342 16 6 2.4204 -6.0698 -0.2434 17 1 3.4555 -5.8617 0.0276 18 6 2.2874 -6.6648 -1.6216 19 6 1.0368 -6.8155 -2.1912 20 6 0.9145 -7.3560 -3.4574 21 6 2.0431 -7.7564 -4.1503 22 17 1.8898 -8.4412 -5.7381 23 6 3.2940 -7.6104 -3.5774 24 6 3.4155 -7.0643 -2.3136 25 1 -0.4851 0.8401 0.0004 26 1 0.9221 -2.5281 -1.9998 27 1 2.8717 -3.6036 -0.8927 28 1 2.8718 -3.6052 0.8873 29 1 2.0745 -5.0657 2.0725 30 1 0.3105 -5.3388 1.7403 31 1 0.7804 -7.3860 0.4588 32 1 2.2794 -7.4411 1.4929 33 1 0.1555 -6.5073 -1.6484 34 1 -0.0621 -7.4696 -3.9042 35 1 4.1754 -7.9225 -4.1180 36 1 4.3919 -6.9499 -1.8664 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929786270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:31 Heat of formation + Delta-G solvation = -18.869643 kcal Electronic energy + Delta-G solvation = -19464.870486 eV Core-core repulsion = 16360.853914 eV Total energy + Delta-G solvation = -3104.016572 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.53502 -39.60497 -37.54944 -37.25588 -34.23379 -32.55819 -31.98837 -31.44340 -28.71948 -26.55455 -25.55202 -23.80821 -22.83875 -22.20928 -20.45550 -19.05504 -18.20352 -17.00203 -16.71113 -16.57139 -16.48512 -16.03279 -15.57991 -15.30966 -14.98868 -14.53892 -14.36458 -14.17324 -13.86809 -13.34634 -13.08281 -12.97705 -12.84979 -12.70503 -12.46811 -12.35854 -12.16101 -11.91327 -11.77994 -11.73312 -11.39580 -11.04058 -10.72070 -10.14724 -9.92962 -9.67343 -9.40458 -8.13680 -6.40363 0.18502 0.41051 1.18557 1.38661 1.39942 1.51931 2.37527 2.63519 3.12048 3.23291 3.55698 3.84237 3.91082 4.02374 4.09522 4.21428 4.27645 4.41221 4.44216 4.52154 4.60461 4.66762 4.78007 4.83893 4.96367 5.03519 5.08535 5.18141 5.30899 5.34467 5.40054 5.60403 5.69206 5.83475 5.90770 6.06164 6.24618 6.73619 7.34022 7.59779 8.90859 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.020284 B = 0.004059 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.092272 B = 6896.729896 C = 7599.095417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.026 3.974 3 Si 0.960 3.040 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.588 4.588 8 H 0.059 0.941 9 C 0.243 3.757 10 H 0.014 0.986 11 O -0.570 6.570 12 C 0.017 3.983 13 N -0.471 5.471 14 C -0.010 4.010 15 C -0.114 4.114 16 C 0.057 3.943 17 H 0.092 0.908 18 C -0.068 4.068 19 C -0.084 4.084 20 C -0.121 4.121 21 C -0.046 4.046 22 Cl -0.075 7.075 23 C -0.115 4.115 24 C -0.104 4.104 25 H 0.261 0.739 26 H 0.349 0.651 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.126 0.874 34 H 0.138 0.862 35 H 0.150 0.850 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.328 -18.047 -3.829 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.784 3.216 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.627 4.627 8 H 0.077 0.923 9 C 0.185 3.815 10 H 0.032 0.968 11 O -0.372 6.372 12 C -0.112 4.112 13 N -0.192 5.192 14 C -0.138 4.138 15 C -0.152 4.152 16 C -0.052 4.052 17 H 0.110 0.890 18 C -0.068 4.068 19 C -0.103 4.103 20 C -0.140 4.140 21 C -0.073 4.073 22 Cl -0.047 7.047 23 C -0.134 4.134 24 C -0.122 4.122 25 H 0.070 0.930 26 H 0.192 0.808 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.144 0.856 34 H 0.156 0.844 35 H 0.168 0.832 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.106 -17.891 -3.936 19.309 hybrid contribution 1.157 1.301 0.003 1.741 sum 7.263 -16.590 -3.933 18.532 Atomic orbital electron populations 1.70238 1.07742 1.27256 1.48513 1.25907 0.95447 1.02945 0.93369 0.85511 0.79179 0.79169 0.77715 1.18602 1.20576 1.20396 1.22110 0.93508 0.92896 1.54161 0.92286 1.19033 0.87684 0.90070 0.84722 0.96835 1.86511 1.38661 1.96470 1.15599 1.23193 0.96230 0.91762 1.00039 1.68989 1.32660 1.00145 1.17453 1.23852 1.02366 0.95946 0.91686 1.23176 1.00531 0.95131 0.96332 1.22429 0.97416 0.92757 0.92564 0.88981 1.19816 0.93465 0.97864 0.95682 1.21007 0.98206 0.96642 0.94444 1.21192 0.98376 0.99552 0.94861 1.21057 0.95620 1.02775 0.87811 1.98354 1.98308 1.83470 1.24523 1.21211 0.96268 1.00132 0.95746 1.21242 0.99084 0.97999 0.93900 0.93032 0.80761 0.92164 0.93817 0.90919 0.90904 0.88743 0.87927 0.85570 0.84402 0.83191 0.83221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.72 12.84 21.45 0.28 -54.45 16 2 C 0.03 1.45 5.40 84.66 0.46 1.91 16 3 Si 0.96 43.53 29.54 68.60 2.03 45.55 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 7 C -0.59 -32.56 8.76 25.60 0.22 -32.33 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.24 12.62 3.10 29.85 0.09 12.71 16 10 H 0.01 0.81 8.14 -2.39 -0.02 0.79 16 11 O -0.57 -30.87 12.60 -148.98 -1.88 -32.75 16 12 C 0.02 0.66 4.42 86.30 0.38 1.05 16 13 N -0.47 -16.08 5.50 -906.62 -4.98 -21.07 16 14 C -0.01 -0.28 7.71 83.58 0.64 0.37 16 15 C -0.11 -2.48 7.91 30.94 0.24 -2.23 16 16 C 0.06 1.47 3.25 41.44 0.13 1.61 16 17 H 0.09 2.15 7.85 -2.39 -0.02 2.13 16 18 C -0.07 -1.70 5.39 -19.86 -0.11 -1.81 16 19 C -0.08 -2.25 8.86 22.27 0.20 -2.06 16 20 C -0.12 -2.97 9.83 22.29 0.22 -2.75 16 21 C -0.05 -1.05 6.32 22.33 0.14 -0.91 16 22 Cl -0.08 -1.58 28.96 -2.72 -0.08 -1.66 16 23 C -0.12 -2.37 9.83 22.29 0.22 -2.15 16 24 C -0.10 -2.19 9.71 22.26 0.22 -1.98 16 25 H 0.26 14.94 8.31 -92.70 -0.77 14.17 16 26 H 0.35 17.19 9.04 -74.06 -0.67 16.52 16 27 H 0.06 2.40 8.08 -2.39 -0.02 2.38 16 28 H 0.04 1.68 7.30 -2.39 -0.02 1.66 16 29 H 0.07 1.99 7.42 -2.39 -0.02 1.98 16 30 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.09 2.03 7.62 -2.38 -0.02 2.01 16 32 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.13 3.67 7.81 -2.91 -0.02 3.65 16 34 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 36 H 0.15 2.43 8.05 -2.91 -0.02 2.40 16 Total: -1.00 -65.81 320.99 -1.16 -66.97 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.42 Total: 25.98 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: 3.06 Total: -28.58 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -4.71 Total: -75.51 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -1.88 Total: -32.75 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.08 Total: -1.66 kcal Total: -65.81 -1.16 -66.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929786270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.096 kcal (2) G-P(sol) polarization free energy of solvation -65.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds