Wall clock time and date at job start Tue Mar 31 2020 06:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99977 * 2 1 4 4 H 1.48501 * 109.47201 * 240.00132 * 3 2 1 5 5 H 1.48503 * 109.46878 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47328 * 119.99601 * 3 2 1 7 7 C 1.38813 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 197.35250 * 7 2 1 9 9 N 1.36936 * 120.00195 * 17.36157 * 7 2 1 10 10 C 1.46931 * 120.63067 * 27.67060 * 9 7 2 11 11 C 1.53187 * 108.77328 * 126.41445 * 10 9 7 12 12 C 1.53039 * 109.34129 * 54.62137 * 11 10 9 13 13 C 1.53042 * 109.53673 * 298.67895 * 12 11 10 14 14 H 1.09002 * 109.49964 * 301.34880 * 13 12 11 15 15 N 1.46501 * 109.49730 * 181.28490 * 13 12 11 16 16 C 1.34777 * 119.99852 * 155.13191 * 15 13 12 17 17 O 1.21627 * 120.00124 * 0.02562 * 16 15 13 18 18 C 1.47104 * 119.99865 * 179.97438 * 16 15 13 19 19 C 1.38386 * 127.99621 * 179.70313 * 18 16 15 20 20 C 1.37581 * 111.26084 * 179.88754 * 19 18 16 21 21 N 1.29553 * 117.95043 * 0.43646 * 20 19 18 22 22 S 1.56318 * 110.37950 * 359.74930 * 21 20 19 23 23 C 1.46921 * 120.62787 * 207.69559 * 9 7 2 24 24 H 0.97006 * 120.00403 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.58644 * 6.62357 * 10 9 7 26 26 H 1.09000 * 109.69982 * 246.27127 * 10 9 7 27 27 H 1.09004 * 109.49732 * 174.58428 * 11 10 9 28 28 H 1.09000 * 109.49839 * 294.64876 * 11 10 9 29 29 H 1.08999 * 109.46398 * 58.66496 * 12 11 10 30 30 H 1.09001 * 109.46237 * 178.62967 * 12 11 10 31 31 H 0.96997 * 120.00275 * 335.12670 * 15 13 12 32 32 H 1.08003 * 124.37115 * 0.02921 * 19 18 16 33 33 H 1.07998 * 121.02557 * 180.18367 * 20 19 18 34 34 H 1.08993 * 109.59005 * 353.36718 * 23 9 7 35 35 H 1.09002 * 109.58930 * 113.80288 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3528 10 6 0.2277 -2.3350 -1.2737 11 6 0.5005 -3.3056 -2.4270 12 6 0.8188 -4.6907 -1.8593 13 6 2.0741 -4.6104 -0.9876 14 1 2.9083 -4.2411 -1.5841 15 7 2.3955 -5.9425 -0.4694 16 6 3.6619 -6.2414 -0.1181 17 8 4.5378 -5.4050 -0.2308 18 6 3.9846 -7.5788 0.4027 19 6 5.2176 -8.0619 0.8044 20 6 5.1261 -9.3648 1.2368 21 7 3.9635 -9.9356 1.2032 22 16 2.8865 -8.9450 0.6533 23 6 1.8191 -3.6546 0.1822 24 1 -0.4851 0.8401 -0.0004 25 1 0.0984 -1.3268 -1.6673 26 1 -0.6758 -2.6397 -0.7456 27 1 -0.3803 -3.3680 -3.0661 28 1 1.3488 -2.9479 -3.0106 29 1 -0.0202 -5.0374 -1.2560 30 1 0.9894 -5.3887 -2.6790 31 1 1.6969 -6.6094 -0.3791 32 1 6.1331 -7.4894 0.7834 33 1 5.9973 -9.8967 1.5896 34 1 2.7399 -3.5171 0.7490 35 1 1.0467 -4.0684 0.8304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007445945.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:53 Heat of formation + Delta-G solvation = 28.358899 kcal Electronic energy + Delta-G solvation = -19560.606954 eV Core-core repulsion = 16492.974822 eV Total energy + Delta-G solvation = -3067.632131 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.97245 -39.07993 -37.32021 -34.40902 -32.56081 -31.66239 -30.48468 -28.87328 -26.07607 -25.30009 -22.97227 -22.14117 -21.21540 -20.22190 -19.38877 -18.52113 -17.08351 -16.74699 -15.73245 -15.28833 -15.16283 -14.68586 -14.42877 -13.96075 -13.74508 -13.49784 -13.44196 -13.12521 -12.44017 -12.42724 -11.88596 -11.55351 -11.13414 -11.01524 -10.92739 -10.78765 -10.29497 -10.26442 -10.12879 -9.93730 -9.88239 -9.68984 -9.65961 -9.09918 -8.92388 -8.41744 -6.69075 -5.78900 -3.21115 0.10472 1.05677 1.63389 2.01628 3.08563 3.15060 3.41443 3.46042 3.49076 4.48661 4.57356 4.75719 4.92159 5.23543 5.35431 5.43964 5.51070 5.58878 5.60244 5.67164 6.02808 6.08619 6.19823 6.23779 6.46530 6.56370 6.59994 6.65211 6.79892 6.92772 7.33956 7.54568 7.63660 7.82614 8.20054 8.45243 9.21496 9.83625 10.38990 11.29846 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.029854 B = 0.003996 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.663753 B = 7005.915537 C = 7570.524674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.253 4.253 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.167 3.833 11 C -0.139 4.139 12 C -0.116 4.116 13 C 0.126 3.874 14 H 0.090 0.910 15 N -0.713 5.713 16 C 0.590 3.410 17 O -0.516 6.516 18 C -0.257 4.257 19 C -0.116 4.116 20 C 0.059 3.941 21 N -0.522 5.522 22 S 0.412 5.588 23 C 0.141 3.859 24 H 0.254 0.746 25 H 0.090 0.910 26 H 0.020 0.980 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.393 0.607 32 H 0.176 0.824 33 H 0.183 0.817 34 H 0.059 0.941 35 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.923 -17.885 -1.366 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.179 4.179 12 C -0.154 4.154 13 C 0.021 3.979 14 H 0.108 0.892 15 N -0.364 5.364 16 C 0.374 3.626 17 O -0.392 6.392 18 C -0.391 4.391 19 C -0.151 4.151 20 C -0.133 4.133 21 N -0.352 5.352 22 S 0.566 5.434 23 C 0.014 3.986 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.227 0.773 32 H 0.193 0.807 33 H 0.200 0.800 34 H 0.077 0.923 35 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 2.666 -18.387 -1.340 18.627 hybrid contribution 1.821 1.234 0.194 2.208 sum 4.487 -17.153 -1.146 17.767 Atomic orbital electron populations 1.70029 1.05249 1.25647 1.53895 1.25014 0.95285 0.98393 1.00800 0.86347 0.78911 0.83157 0.78262 1.20946 1.21633 1.20832 1.19186 0.92837 0.84673 1.41535 0.91552 1.43988 1.35604 1.00981 1.50381 1.20850 0.88563 0.98627 0.87870 1.22181 1.00539 0.95030 1.00160 1.21694 0.96604 0.98803 0.98285 1.21872 0.98178 0.80484 0.97391 0.89196 1.46042 1.08369 1.16350 1.65614 1.16734 0.83312 0.84493 0.78106 1.90865 1.46975 1.48076 1.53316 1.27041 1.00049 1.01418 1.10559 1.22154 0.98981 0.94995 0.98959 1.22297 0.95663 0.93300 1.02089 1.72230 1.06842 1.33043 1.23091 1.81640 1.15995 0.95204 1.50560 1.21191 0.98098 0.86869 0.92491 0.93584 0.89206 0.96234 0.92588 0.92349 0.92063 0.92915 0.77312 0.80671 0.80006 0.92273 0.96324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.05 11.19 55.49 0.62 -25.43 16 2 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 3 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.25 -7.05 9.59 -15.06 -0.14 -7.20 16 8 H 0.07 1.86 7.89 -52.49 -0.41 1.45 16 9 N -0.59 -14.73 2.99 -172.32 -0.52 -15.24 16 10 C 0.17 3.86 5.31 -3.71 -0.02 3.84 16 11 C -0.14 -2.52 6.08 -26.61 -0.16 -2.68 16 12 C -0.12 -1.79 5.36 -26.69 -0.14 -1.93 16 13 C 0.13 2.18 2.60 -67.80 -0.18 2.01 16 14 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 15 N -0.71 -10.03 5.08 -54.86 -0.28 -10.31 16 16 C 0.59 8.98 7.77 -12.66 -0.10 8.88 16 17 O -0.52 -9.96 16.63 5.25 0.09 -9.88 16 18 C -0.26 -3.07 6.76 -35.93 -0.24 -3.31 16 19 C -0.12 -1.19 10.40 -39.77 -0.41 -1.61 16 20 C 0.06 0.54 11.14 -18.75 -0.21 0.33 16 21 N -0.52 -5.58 11.29 21.64 0.24 -5.34 16 22 S 0.41 3.96 22.81 -107.50 -2.45 1.51 16 23 C 0.14 3.02 6.09 -3.71 -0.02 3.00 16 24 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.09 2.34 6.04 -51.93 -0.31 2.03 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.39 4.28 7.98 -40.82 -0.33 3.96 16 32 H 0.18 1.61 8.06 -52.48 -0.42 1.19 16 33 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.06 1.36 7.93 -51.93 -0.41 0.95 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 307.60 15.07 4.64 4.64 Total: -1.00 -32.23 307.60 -8.78 -41.02 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -4.38 Total: 0.81 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -1.72 Total: 1.35 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.07 Total: -56.32 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Atomic # 16 Polarization: 3.96 SS G_CDS: -2.45 Total: 1.51 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.23 -8.78 -41.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007445945.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.375 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds