Wall clock time and date at job start Tue Mar 31 2020 06:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00246 * 2 1 4 4 H 1.48498 * 109.47535 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47325 * 300.00152 * 3 2 1 6 6 H 1.48506 * 109.47006 * 59.99867 * 3 2 1 7 7 C 1.38821 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99703 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.47019 * 125.65157 * 0.02562 * 9 7 2 11 11 C 1.54321 * 107.27531 * 178.90454 * 10 9 7 12 12 C 1.55157 * 103.10033 * 337.71659 * 11 10 9 13 13 H 1.09004 * 111.00537 * 153.66574 * 12 11 10 14 14 N 1.46494 * 111.00680 * 277.51720 * 12 11 10 15 15 C 1.34774 * 120.00272 * 204.99847 * 14 12 11 16 16 O 1.21286 * 119.99796 * 0.02562 * 15 14 12 17 17 C 1.50699 * 120.00534 * 179.97438 * 15 14 12 18 18 C 1.50692 * 109.47782 * 180.02562 * 17 15 14 19 19 C 1.33642 * 122.75301 * 124.72847 * 18 17 15 20 20 S 1.76200 * 107.92422 * 179.97438 * 19 18 17 21 21 C 1.70978 * 90.28467 * 0.27991 * 20 19 18 22 22 N 1.29025 * 110.16377 * 359.83481 * 21 20 19 23 23 C 1.47431 * 125.64700 * 179.97438 * 9 7 2 24 24 H 0.96994 * 119.99831 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.88251 * 59.48195 * 10 9 7 26 26 H 1.09004 * 109.88394 * 298.32108 * 10 9 7 27 27 H 1.09002 * 110.72109 * 96.17040 * 11 10 9 28 28 H 1.09003 * 110.72356 * 219.26865 * 11 10 9 29 29 H 0.97001 * 120.00377 * 24.99995 * 14 12 11 30 30 H 1.09002 * 109.47124 * 300.00477 * 17 15 14 31 31 H 1.09007 * 109.46996 * 60.00042 * 17 15 14 32 32 H 1.07999 * 126.03562 * 0.04497 * 19 18 17 33 33 H 1.07998 * 124.91539 * 179.83853 * 21 20 19 34 34 H 1.08999 * 110.36190 * 323.00007 * 23 9 7 35 35 H 1.08999 * 110.36356 * 85.32528 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4485 -4.0441 -0.0287 12 6 0.8492 -4.6593 -0.6160 13 1 0.9782 -5.6895 -0.2840 14 7 0.8543 -4.5767 -2.0786 15 6 1.5825 -5.4514 -2.8004 16 8 2.2333 -6.3072 -2.2391 17 6 1.5874 -5.3668 -4.3050 18 6 2.4723 -6.4498 -4.8663 19 6 2.0426 -7.3418 -5.7639 20 16 3.3858 -8.4160 -6.1468 21 6 4.3893 -7.5640 -5.0557 22 7 3.7316 -6.5989 -4.5074 23 6 1.9334 -3.7312 -0.0016 24 1 -0.4849 0.8400 0.0004 25 1 -0.5576 -2.0513 -0.8836 26 1 -0.5543 -2.0854 0.9018 27 1 -0.6317 -4.4190 0.9783 28 1 -1.3005 -4.2505 -0.6765 29 1 0.3336 -3.8925 -2.5276 30 1 0.5721 -5.4973 -4.6796 31 1 1.9658 -4.3920 -4.6129 32 1 1.0481 -7.3941 -6.1817 33 1 5.4239 -7.7996 -4.8546 34 1 2.8328 -3.7400 -0.6173 35 1 2.1665 -4.0429 1.0165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015799914.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:55 Heat of formation + Delta-G solvation = 40.004692 kcal Electronic energy + Delta-G solvation = -19494.435242 eV Core-core repulsion = 16427.308110 eV Total energy + Delta-G solvation = -3067.127132 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.24086 -38.99372 -37.07077 -33.64752 -32.37660 -31.56311 -29.25764 -28.38412 -26.94676 -24.99056 -24.35234 -21.20397 -20.06562 -19.72348 -19.54467 -18.18730 -17.02341 -16.61895 -15.97167 -15.57378 -14.91281 -14.62324 -14.30275 -13.89584 -13.78014 -13.38386 -13.18031 -12.98678 -12.65130 -12.03328 -11.90687 -11.77029 -11.49220 -10.94258 -10.89134 -10.65680 -10.32588 -10.09339 -9.92840 -9.67693 -9.66253 -9.60620 -9.42774 -8.90694 -8.69559 -8.46903 -6.80260 -5.71089 -3.03225 0.63509 1.30028 1.61382 2.73241 2.99884 3.40176 3.46692 3.48817 3.66017 4.11729 4.51476 4.80618 5.00910 5.13187 5.19396 5.36660 5.39089 5.49111 5.51929 5.61991 5.80458 5.86586 6.00765 6.24196 6.40711 6.51954 6.57352 6.74640 7.11220 7.55217 7.57533 7.71364 7.81021 7.95750 8.26039 8.63251 9.23599 9.83457 10.49498 11.40990 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.026800 B = 0.003734 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.519981 B = 7496.828915 C = 7998.744750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.176 3.824 11 C -0.154 4.154 12 C 0.129 3.871 13 H 0.089 0.911 14 N -0.706 5.706 15 C 0.517 3.483 16 O -0.534 6.534 17 C -0.070 4.070 18 C 0.091 3.909 19 C -0.255 4.255 20 S 0.097 5.903 21 C 0.028 3.972 22 N -0.440 5.440 23 C 0.125 3.875 24 H 0.251 0.749 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.402 0.598 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.177 0.823 33 H 0.198 0.802 34 H 0.043 0.957 35 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.013 -15.221 -12.575 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.051 3.949 11 C -0.193 4.193 12 C 0.024 3.976 13 H 0.107 0.893 14 N -0.357 5.357 15 C 0.302 3.698 16 O -0.410 6.410 17 C -0.113 4.113 18 C -0.041 4.041 19 C -0.394 4.394 20 S 0.349 5.651 21 C -0.271 4.271 22 N -0.152 5.152 23 C -0.002 4.002 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.237 0.763 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.195 0.805 33 H 0.215 0.785 34 H 0.061 0.939 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.893 -16.134 -12.416 20.446 hybrid contribution -0.309 1.951 0.188 1.984 sum 1.585 -14.183 -12.228 18.794 Atomic orbital electron populations 1.69960 1.04807 1.24799 1.57665 1.24770 0.95723 0.97559 1.02507 0.86053 0.78786 0.83826 0.77183 1.20553 1.21828 1.21814 1.19120 0.90486 0.82401 1.43067 0.90502 1.44485 1.01499 0.99928 1.87192 1.21165 0.84580 0.87933 1.01187 1.23220 0.95793 1.00046 1.00197 1.22179 0.97210 0.99236 0.78991 0.89343 1.45793 1.49001 1.33674 1.07210 1.20141 0.79365 0.81579 0.88726 1.90697 1.41627 1.36184 1.72510 1.20265 0.99354 0.98196 0.93492 1.19693 0.90623 0.97885 0.95908 1.26768 1.04296 1.01125 1.07194 1.83906 1.04139 1.34175 1.42902 1.28421 1.04775 0.95652 0.98301 1.66040 1.06855 1.19296 1.23028 1.22023 0.94880 0.86294 0.97003 0.93909 0.93611 0.93837 0.91092 0.91674 0.76344 0.87409 0.86967 0.80542 0.78533 0.93899 0.95595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.69 10.31 55.49 0.57 -26.12 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.22 -6.23 10.28 -15.06 -0.15 -6.39 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -15.33 3.40 -169.77 -0.58 -15.91 16 10 C 0.18 4.11 5.36 -3.07 -0.02 4.09 16 11 C -0.15 -2.74 6.53 -24.90 -0.16 -2.90 16 12 C 0.13 2.36 3.46 -65.53 -0.23 2.13 16 13 H 0.09 1.59 7.54 -51.93 -0.39 1.20 16 14 N -0.71 -11.60 5.19 -51.48 -0.27 -11.86 16 15 C 0.52 8.50 7.80 -10.99 -0.09 8.42 16 16 O -0.53 -10.75 15.08 5.55 0.08 -10.66 16 17 C -0.07 -0.87 6.19 -29.04 -0.18 -1.05 16 18 C 0.09 1.21 5.64 -84.23 -0.47 0.74 16 19 C -0.25 -2.64 11.07 29.12 0.32 -2.31 16 20 S 0.10 0.88 23.22 -107.50 -2.50 -1.62 16 21 C 0.03 0.31 12.23 51.58 0.63 0.94 16 22 N -0.44 -6.58 9.68 -11.90 -0.12 -6.70 16 23 C 0.13 2.74 6.95 -2.27 -0.02 2.72 16 24 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.05 1.15 7.38 -51.93 -0.38 0.77 16 26 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.40 6.11 8.67 -40.82 -0.35 5.75 16 30 H 0.11 0.94 8.03 -51.93 -0.42 0.52 16 31 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.20 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 310.84 15.07 4.68 4.68 Total: -1.00 -34.29 310.84 -8.04 -42.33 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -4.44 Total: 2.67 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -0.46 Total: 6.03 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.39 Total: -60.60 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.50 Total: -1.62 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.29 -8.04 -42.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015799914.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.334 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds