Wall clock time and date at job start Tue Mar 31 2020 06:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 119.99765 * 2 1 4 4 H 1.48497 * 109.47017 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47317 * 119.99809 * 3 2 1 6 6 H 1.48505 * 109.46985 * 239.99830 * 3 2 1 7 7 C 1.38812 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00125 * 208.44848 * 7 2 1 9 9 N 1.36932 * 119.99864 * 28.45918 * 7 2 1 10 10 C 1.47424 * 125.65125 * 19.39910 * 9 7 2 11 11 C 1.55124 * 104.72207 * 155.82185 * 10 9 7 12 12 C 1.55155 * 101.48678 * 37.30199 * 11 10 9 13 13 H 1.09003 * 110.86859 * 205.89806 * 12 11 10 14 14 N 1.46497 * 110.72453 * 82.69285 * 12 11 10 15 15 C 1.34774 * 119.99885 * 160.02249 * 14 12 11 16 16 O 1.21277 * 120.00506 * 0.02562 * 15 14 12 17 17 C 1.50705 * 119.99749 * 180.02562 * 15 14 12 18 18 C 1.50700 * 109.46991 * 180.02562 * 17 15 14 19 19 C 1.33632 * 122.75481 * 125.00428 * 18 17 15 20 20 S 1.76197 * 107.92652 * 179.97438 * 19 18 17 21 21 C 1.70978 * 90.28158 * 359.97438 * 20 19 18 22 22 N 1.29021 * 110.16552 * 359.73562 * 21 20 19 23 23 C 1.47023 * 125.64676 * 199.71776 * 9 7 2 24 24 H 0.96999 * 119.99939 * 185.65640 * 1 2 3 25 25 H 1.09001 * 110.36928 * 274.75730 * 10 9 7 26 26 H 1.09010 * 110.36519 * 37.07542 * 10 9 7 27 27 H 1.08995 * 111.19670 * 279.19307 * 11 10 9 28 28 H 1.09007 * 110.90628 * 155.28013 * 11 10 9 29 29 H 0.96996 * 119.99802 * 340.02588 * 14 12 11 30 30 H 1.09001 * 109.46939 * 299.99966 * 17 15 14 31 31 H 1.08999 * 109.47066 * 60.00166 * 17 15 14 32 32 H 1.08008 * 126.03386 * 359.97438 * 19 18 17 33 33 H 1.08002 * 124.91161 * 180.02562 * 21 20 19 34 34 H 1.08998 * 109.87770 * 300.43121 * 23 9 7 35 35 H 1.09002 * 109.88311 * 61.60170 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7464 -0.0006 5 1 3.1038 1.6966 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 2.9924 -1.2584 0.4461 9 7 1.4497 -2.3166 -0.5641 10 6 0.3427 -2.3223 -1.5377 11 6 0.4996 -3.6612 -2.3052 12 6 0.9607 -4.6149 -1.1715 13 1 1.5397 -5.4459 -1.5747 14 7 -0.1890 -5.1083 -0.4094 15 6 -0.0750 -6.2268 0.3339 16 8 0.9795 -6.8246 0.3721 17 6 -1.2579 -6.7346 1.1174 18 6 -0.8694 -7.9886 1.8574 19 6 -1.0175 -8.1239 3.1785 20 16 -0.4448 -9.7287 3.6270 21 6 -0.0638 -10.0585 1.9932 22 7 -0.3621 -9.0445 1.2535 23 6 1.8477 -3.7060 -0.2947 24 1 -0.4850 -0.8360 0.0828 25 1 -0.6167 -2.2883 -1.0215 26 1 0.4358 -1.4796 -2.2229 27 1 1.2591 -3.5830 -3.0830 28 1 -0.4539 -3.9839 -2.7235 29 1 -1.0323 -4.6300 -0.4397 30 1 -1.5736 -5.9745 1.8321 31 1 -2.0786 -6.9546 0.4347 32 1 -1.4176 -7.3806 3.8524 33 1 0.3605 -10.9838 1.6321 34 1 2.8964 -3.8483 -0.5556 35 1 1.6905 -3.9392 0.7584 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015799915.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:58 Heat of formation + Delta-G solvation = 9.950720 kcal Electronic energy + Delta-G solvation = -19460.025095 eV Core-core repulsion = 16391.594725 eV Total energy + Delta-G solvation = -3068.430370 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.38611 -40.35248 -38.88674 -35.63763 -33.89259 -32.99536 -30.96564 -29.73121 -28.54152 -26.33817 -25.77648 -22.62934 -22.12537 -21.34990 -20.48086 -19.59825 -19.09999 -18.10466 -17.26056 -16.82996 -16.40567 -16.11194 -15.68715 -15.51706 -15.26191 -14.99196 -14.65880 -14.15934 -14.13089 -13.90906 -13.60262 -13.19098 -12.64722 -12.62977 -12.43703 -12.37470 -12.25604 -11.97450 -11.88460 -11.60103 -10.95616 -10.55616 -10.53093 -10.35963 -10.11275 -9.75239 -9.02855 -8.35401 -5.37913 -0.19627 0.51999 0.79095 1.57233 1.64442 1.65252 1.76765 1.84322 2.32218 2.62237 3.15880 3.26012 3.48510 3.63448 3.87475 3.92174 4.03178 4.16939 4.26923 4.42087 4.44982 4.48813 4.53428 4.70735 4.80077 4.90610 4.91895 5.04180 5.14569 5.25155 5.54352 5.65871 6.31275 6.56122 6.84082 6.89095 7.27671 7.67232 8.26005 8.96091 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.031540 B = 0.003503 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.551376 B = 7991.636735 C = 8361.354716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.069 4.069 3 Si 1.115 2.885 4 H -0.286 1.286 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.356 4.356 8 H 0.048 0.952 9 N -0.621 5.621 10 C 0.145 3.855 11 C -0.121 4.121 12 C 0.148 3.852 13 H 0.094 0.906 14 N -0.709 5.709 15 C 0.514 3.486 16 O -0.571 6.571 17 C -0.062 4.062 18 C 0.057 3.943 19 C -0.259 4.259 20 S 0.155 5.845 21 C 0.010 3.990 22 N -0.487 5.487 23 C 0.126 3.874 24 H 0.257 0.743 25 H 0.018 0.982 26 H 0.024 0.976 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.411 0.589 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.199 0.801 33 H 0.222 0.778 34 H 0.023 0.977 35 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.494 -18.632 3.356 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.266 4.266 3 Si 0.939 3.061 4 H -0.212 1.212 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.485 4.485 8 H 0.066 0.934 9 N -0.348 5.348 10 C 0.020 3.980 11 C -0.159 4.159 12 C 0.042 3.958 13 H 0.112 0.888 14 N -0.361 5.361 15 C 0.301 3.699 16 O -0.450 6.450 17 C -0.104 4.104 18 C -0.076 4.076 19 C -0.398 4.398 20 S 0.408 5.592 21 C -0.288 4.288 22 N -0.201 5.201 23 C 0.000 4.000 24 H 0.067 0.933 25 H 0.036 0.964 26 H 0.042 0.958 27 H 0.108 0.892 28 H 0.127 0.873 29 H 0.247 0.753 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.216 0.784 33 H 0.238 0.762 34 H 0.041 0.959 35 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -5.662 -17.988 3.708 19.219 hybrid contribution -0.086 -0.544 -0.145 0.570 sum -5.748 -18.532 3.563 19.728 Atomic orbital electron populations 1.70904 1.07318 1.29459 1.49973 1.27119 0.96585 1.04171 0.98733 0.82860 0.73944 0.72099 0.77200 1.21202 1.20442 1.20736 1.19945 0.99476 0.89856 1.39201 0.93386 1.44799 1.41086 1.00898 1.48018 1.21571 0.90314 0.95911 0.90205 1.23062 1.03507 0.93234 0.96116 1.21654 0.87476 0.95273 0.91387 0.88787 1.45881 1.14954 1.26868 1.48397 1.20949 0.90213 0.79648 0.79053 1.90687 1.31439 1.58447 1.64409 1.20310 0.96537 0.93554 0.99988 1.19869 1.01363 0.95159 0.91159 1.27191 1.10926 1.02831 0.98881 1.83729 1.55677 1.08386 1.11422 1.28859 1.03888 1.02284 0.93727 1.66033 1.13428 1.00555 1.40084 1.21777 0.96664 0.85354 0.96201 0.93258 0.96378 0.95752 0.89213 0.87325 0.75255 0.84871 0.84772 0.78364 0.76191 0.95943 0.97990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.01 21.65 0.28 -56.03 16 2 C -0.07 -3.98 5.10 84.86 0.43 -3.55 16 3 Si 1.11 51.47 30.00 68.60 2.06 53.53 16 4 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.36 -20.89 10.00 84.03 0.84 -20.05 16 8 H 0.05 2.88 7.97 -2.91 -0.02 2.85 16 9 N -0.62 -32.31 3.26 -691.54 -2.26 -34.56 16 10 C 0.15 6.48 5.36 86.93 0.47 6.94 16 11 C -0.12 -3.92 6.65 32.06 0.21 -3.70 16 12 C 0.15 5.20 3.25 46.18 0.15 5.35 16 13 H 0.09 3.29 7.69 -2.39 -0.02 3.28 16 14 N -0.71 -21.38 5.11 -436.92 -2.23 -23.61 16 15 C 0.51 16.14 7.79 87.66 0.68 16.83 16 16 O -0.57 -23.04 15.18 -3.02 -0.05 -23.08 16 17 C -0.06 -1.37 6.20 29.10 0.18 -1.19 16 18 C 0.06 1.41 5.62 41.52 0.23 1.65 16 19 C -0.26 -5.12 11.07 66.77 0.74 -4.38 16 20 S 0.16 2.54 23.22 -56.49 -1.31 1.23 16 21 C 0.01 0.21 12.23 130.66 1.60 1.81 16 22 N -0.49 -13.43 9.70 -191.56 -1.86 -15.29 16 23 C 0.13 5.76 6.98 86.73 0.61 6.37 16 24 H 0.26 15.51 6.19 -92.71 -0.57 14.94 16 25 H 0.02 0.84 6.80 -2.39 -0.02 0.83 16 26 H 0.02 1.20 8.08 -2.38 -0.02 1.18 16 27 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 28 H 0.11 2.73 8.14 -2.38 -0.02 2.71 16 29 H 0.41 10.44 8.62 -92.71 -0.80 9.64 16 30 H 0.13 2.26 8.03 -2.39 -0.02 2.25 16 31 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.20 2.84 8.06 -2.91 -0.02 2.81 16 33 H 0.22 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.00 0.10 8.04 -2.39 -0.02 0.08 16 Total: -1.00 -79.02 311.17 1.29 -77.73 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.51 Total: 14.02 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 6.14 Total: 6.08 kcal Atomic # 7 Polarization: -123.44 SS G_CDS: -6.06 Total: -129.50 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.05 Total: -23.08 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 2.06 Total: 53.53 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -1.31 Total: 1.23 kcal Total: -79.02 1.29 -77.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015799915.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.684 kcal (2) G-P(sol) polarization free energy of solvation -79.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds