Wall clock time and date at job start Tue Mar 31 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86800 * 120.00369 * 2 1 4 4 H 1.48502 * 109.46898 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47345 * 119.99705 * 3 2 1 6 6 H 1.48501 * 109.46938 * 239.99820 * 3 2 1 7 7 C 1.39923 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99940 * 149.61277 * 7 2 1 9 9 C 1.40994 * 119.99834 * 329.61477 * 7 2 1 10 10 C 1.40754 * 120.31127 * 334.20170 * 9 7 2 11 11 C 1.36424 * 119.95375 * 180.02562 * 10 9 7 12 12 C 1.38936 * 120.60594 * 359.97438 * 11 10 9 13 13 C 1.38105 * 120.63935 * 0.02562 * 12 11 10 14 14 C 1.38824 * 120.02028 * 359.71096 * 13 12 11 15 15 N 1.38657 * 120.29849 * 180.27812 * 14 13 12 16 16 C 1.39227 * 119.99723 * 256.11292 * 15 14 13 17 17 C 1.40732 * 118.80486 * 3.91704 * 16 15 14 18 18 C 1.35523 * 121.77117 * 179.78062 * 17 16 15 19 19 C 1.45327 * 118.85944 * 0.44427 * 18 17 16 20 20 N 1.30776 * 138.70702 * 179.78657 * 19 18 17 21 21 O 1.21501 * 109.10199 * 180.02562 * 20 19 18 22 22 N 1.21481 * 116.30940 * 0.02562 * 21 20 19 23 23 C 1.31126 * 109.06426 * 359.97438 * 22 21 20 24 24 C 1.36280 * 118.79535 * 184.18761 * 16 15 14 25 25 H 0.96998 * 120.00095 * 172.87185 * 1 2 3 26 26 H 1.08004 * 120.02330 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.69527 * 179.97438 * 11 10 9 28 28 H 1.08006 * 119.68042 * 179.97438 * 12 11 10 29 29 H 1.07996 * 119.98929 * 180.02562 * 13 12 11 30 30 H 0.97001 * 119.99786 * 76.11934 * 15 14 13 31 31 H 1.08003 * 119.11068 * 0.02562 * 17 16 15 32 32 H 1.08002 * 120.56723 * 180.23809 * 18 17 16 33 33 H 1.07998 * 120.05223 * 359.95553 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 1.2779 2.7464 -0.0006 5 1 3.0966 1.6964 1.2125 6 1 3.0967 1.6962 -1.2125 7 6 2.0084 -1.2118 0.0005 8 1 2.9770 -1.2763 -0.4725 9 6 1.4486 -2.3487 0.6187 10 6 0.5158 -2.2028 1.6627 11 6 -0.0208 -3.3078 2.2560 12 6 0.3440 -4.5820 1.8393 13 6 1.2569 -4.7539 0.8173 14 6 1.8152 -3.6476 0.1915 15 7 2.7280 -3.8135 -0.8391 16 6 4.0857 -3.6124 -0.6055 17 6 4.5129 -3.3231 0.7039 18 6 5.8199 -3.1211 0.9997 19 6 6.8011 -3.1970 -0.0697 20 7 8.0933 -3.0734 -0.2282 21 8 8.3690 -3.2497 -1.3983 22 7 7.4380 -3.4910 -2.1404 23 6 6.3264 -3.4977 -1.4448 24 6 4.9518 -3.6973 -1.6542 25 1 -0.4850 -0.8335 -0.1042 26 1 0.2258 -1.2167 1.9943 27 1 -0.7359 -3.1910 3.0569 28 1 -0.0899 -5.4465 2.3198 29 1 1.5326 -5.7491 0.5015 30 1 2.4205 -4.0696 -1.7227 31 1 3.7799 -3.2645 1.4949 32 1 6.1267 -2.9040 2.0123 33 1 4.5820 -3.9178 -2.6446 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176327515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:14 Heat of formation + Delta-G solvation = 155.018471 kcal Electronic energy + Delta-G solvation = -20941.338643 eV Core-core repulsion = 17743.754932 eV Total energy + Delta-G solvation = -3197.583712 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.04169 -39.38492 -37.61836 -34.93096 -34.21091 -34.12509 -31.94295 -30.54909 -29.65541 -28.02129 -25.32796 -24.80543 -23.79600 -21.41205 -21.18006 -20.53101 -18.55437 -18.39092 -18.07537 -17.63042 -16.47437 -16.02909 -14.95106 -14.67014 -14.14412 -13.99164 -13.83497 -13.41606 -12.94073 -12.75368 -12.63616 -12.41440 -12.20132 -11.51503 -11.38451 -11.32927 -11.15338 -10.93616 -10.79148 -10.60797 -10.49358 -10.08792 -9.71304 -9.15990 -8.74031 -7.96483 -7.91116 -7.46581 -7.07460 -4.71057 0.52140 1.73380 2.33401 2.41813 2.55714 3.04685 3.11925 3.23534 3.51437 3.78137 3.82917 3.85966 4.14788 4.27597 4.31628 5.06994 5.09104 5.15275 5.45365 5.60105 5.86164 5.99974 6.13673 6.19007 6.20371 6.32366 6.47114 6.61207 6.65761 6.80894 7.02106 7.23233 7.45566 7.52747 7.66304 7.83143 7.84368 8.03032 8.16953 8.51864 8.63033 8.97604 9.74243 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015575 B = 0.006462 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.333783 B = 4331.939998 C = 5511.062564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.046 3.954 3 Si 1.054 2.946 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.503 4.503 8 H 0.081 0.919 9 C 0.101 3.899 10 C -0.208 4.208 11 C -0.076 4.076 12 C -0.255 4.255 13 C -0.065 4.065 14 C -0.033 4.033 15 N -0.635 5.635 16 C 0.281 3.719 17 C -0.090 4.090 18 C -0.045 4.045 19 C -0.018 4.018 20 N -0.349 5.349 21 O 0.335 5.665 22 N -0.386 5.386 23 C 0.085 3.915 24 C -0.240 4.240 25 H 0.300 0.700 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.399 0.601 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.634 -3.742 0.780 6.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.179 4.179 3 Si 0.877 3.123 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.530 4.530 8 H 0.099 0.901 9 C 0.097 3.903 10 C -0.228 4.228 11 C -0.095 4.095 12 C -0.275 4.275 13 C -0.085 4.085 14 C -0.126 4.126 15 N -0.252 5.252 16 C 0.168 3.832 17 C -0.113 4.113 18 C -0.066 4.066 19 C -0.173 4.173 20 N -0.071 5.071 21 O 0.112 5.888 22 N -0.120 5.120 23 C -0.067 4.067 24 C -0.271 4.271 25 H 0.113 0.887 26 H 0.124 0.876 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.235 0.765 31 H 0.169 0.831 32 H 0.163 0.837 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.384 -1.992 0.658 5.779 hybrid contribution -0.958 -1.798 -0.156 2.044 sum 4.426 -3.791 0.502 5.849 Atomic orbital electron populations 1.70489 1.08360 1.34423 1.26271 1.27036 0.95425 1.04453 0.91018 0.83782 0.76010 0.74014 0.78544 1.19618 1.19596 1.19859 1.20483 1.05914 0.94712 1.31853 0.90058 1.17759 0.90383 0.91529 0.90648 1.20837 1.04538 0.97513 0.99906 1.20449 0.97887 0.93104 0.98059 1.20175 1.06959 0.95899 1.04442 1.20784 0.96529 0.96145 0.95062 1.17250 1.03831 0.92613 0.98875 1.41362 1.01300 1.70638 1.11938 1.17477 0.84957 0.88656 0.92100 1.20988 0.95634 0.98111 0.96526 1.20735 0.89365 1.00255 0.96270 1.24000 0.89730 1.06344 0.97255 1.74905 1.15276 1.17464 0.99494 1.85276 1.32410 1.60491 1.10627 1.75167 0.96046 1.23207 1.17563 1.22282 0.95410 1.00032 0.89016 1.18448 0.87458 1.21999 0.99234 0.88672 0.87633 0.89019 0.88923 0.88843 0.76537 0.83120 0.83691 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.52 12.37 55.55 0.69 -17.83 16 2 C 0.05 1.04 4.79 -17.33 -0.08 0.96 16 3 Si 1.05 20.20 30.03 -169.99 -5.10 15.10 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 6 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.50 -11.58 8.25 -37.91 -0.31 -11.89 16 8 H 0.08 1.90 6.57 -52.49 -0.34 1.56 16 9 C 0.10 2.25 4.63 -106.63 -0.49 1.76 16 10 C -0.21 -4.59 8.11 -39.29 -0.32 -4.91 16 11 C -0.08 -1.53 9.96 -39.98 -0.40 -1.92 16 12 C -0.25 -4.85 10.03 -39.37 -0.40 -5.24 16 13 C -0.07 -1.24 9.96 -39.41 -0.39 -1.63 16 14 C -0.03 -0.65 4.49 -83.29 -0.37 -1.02 16 15 N -0.63 -11.20 4.82 -8.33 -0.04 -11.24 16 16 C 0.28 4.88 5.35 -84.26 -0.45 4.43 16 17 C -0.09 -1.52 8.62 -39.61 -0.34 -1.86 16 18 C -0.04 -0.70 10.30 -37.73 -0.39 -1.09 16 19 C -0.02 -0.30 7.95 -81.24 -0.65 -0.95 16 20 N -0.35 -5.92 12.28 32.74 0.40 -5.52 16 21 O 0.34 5.58 11.67 26.93 0.31 5.89 16 22 N -0.39 -6.79 12.29 31.89 0.39 -6.40 16 23 C 0.09 1.52 7.76 -83.07 -0.64 0.87 16 24 C -0.24 -4.08 9.80 -39.45 -0.39 -4.46 16 25 H 0.30 7.32 7.21 -40.82 -0.29 7.03 16 26 H 0.11 2.44 6.72 -52.48 -0.35 2.08 16 27 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.09 1.57 8.06 -52.48 -0.42 1.15 16 29 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.40 6.31 8.77 -40.82 -0.36 5.95 16 31 H 0.15 2.67 6.49 -52.48 -0.34 2.33 16 32 H 0.15 1.85 8.06 -52.49 -0.42 1.42 16 33 H 0.13 2.03 8.04 -52.49 -0.42 1.61 16 LS Contribution 290.83 15.07 4.38 4.38 Total: -1.00 -24.06 290.83 -7.19 -31.26 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -2.60 Total: 11.32 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -5.63 Total: -26.96 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 1.44 Total: -40.98 kcal Atomic # 8 Polarization: 5.58 SS G_CDS: 0.31 Total: 5.89 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.10 Total: 15.10 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -24.06 -7.19 -31.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176327515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.274 kcal (2) G-P(sol) polarization free energy of solvation -24.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds