Wall clock time and date at job start Tue Mar 31 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86800 * 120.00369 * 2 1 4 4 H 1.48502 * 109.46898 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47345 * 119.99705 * 3 2 1 6 6 H 1.48501 * 109.46938 * 239.99820 * 3 2 1 7 7 C 1.39923 * 119.99812 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99940 * 149.61277 * 7 2 1 9 9 C 1.40994 * 119.99834 * 329.61477 * 7 2 1 10 10 C 1.40754 * 120.31127 * 334.20170 * 9 7 2 11 11 C 1.36424 * 119.95375 * 180.02562 * 10 9 7 12 12 C 1.38936 * 120.60594 * 359.97438 * 11 10 9 13 13 C 1.38105 * 120.63935 * 0.02562 * 12 11 10 14 14 C 1.38824 * 120.02028 * 359.71096 * 13 12 11 15 15 N 1.38657 * 120.29849 * 180.27812 * 14 13 12 16 16 C 1.39227 * 119.99723 * 256.11292 * 15 14 13 17 17 C 1.40732 * 118.80486 * 3.91704 * 16 15 14 18 18 C 1.35523 * 121.77117 * 179.78062 * 17 16 15 19 19 C 1.45327 * 118.85944 * 0.44427 * 18 17 16 20 20 N 1.30776 * 138.70702 * 179.78657 * 19 18 17 21 21 O 1.21501 * 109.10199 * 180.02562 * 20 19 18 22 22 N 1.21481 * 116.30940 * 0.02562 * 21 20 19 23 23 C 1.31126 * 109.06426 * 359.97438 * 22 21 20 24 24 C 1.36280 * 118.79535 * 184.18761 * 16 15 14 25 25 H 0.96998 * 120.00095 * 172.87185 * 1 2 3 26 26 H 1.08004 * 120.02330 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.69527 * 179.97438 * 11 10 9 28 28 H 1.08006 * 119.68042 * 179.97438 * 12 11 10 29 29 H 1.07996 * 119.98929 * 180.02562 * 13 12 11 30 30 H 0.97001 * 119.99786 * 76.11934 * 15 14 13 31 31 H 1.08003 * 119.11068 * 0.02562 * 17 16 15 32 32 H 1.08002 * 120.56723 * 180.23809 * 18 17 16 33 33 H 1.07998 * 120.05223 * 359.95553 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 1.2779 2.7464 -0.0006 5 1 3.0966 1.6964 1.2125 6 1 3.0967 1.6962 -1.2125 7 6 2.0084 -1.2118 0.0005 8 1 2.9770 -1.2763 -0.4725 9 6 1.4486 -2.3487 0.6187 10 6 0.5158 -2.2028 1.6627 11 6 -0.0208 -3.3078 2.2560 12 6 0.3440 -4.5820 1.8393 13 6 1.2569 -4.7539 0.8173 14 6 1.8152 -3.6476 0.1915 15 7 2.7280 -3.8135 -0.8391 16 6 4.0857 -3.6124 -0.6055 17 6 4.5129 -3.3231 0.7039 18 6 5.8199 -3.1211 0.9997 19 6 6.8011 -3.1970 -0.0697 20 7 8.0933 -3.0734 -0.2282 21 8 8.3690 -3.2497 -1.3983 22 7 7.4380 -3.4910 -2.1404 23 6 6.3264 -3.4977 -1.4448 24 6 4.9518 -3.6973 -1.6542 25 1 -0.4850 -0.8335 -0.1042 26 1 0.2258 -1.2167 1.9943 27 1 -0.7359 -3.1910 3.0569 28 1 -0.0899 -5.4465 2.3198 29 1 1.5326 -5.7491 0.5015 30 1 2.4205 -4.0696 -1.7227 31 1 3.7799 -3.2645 1.4949 32 1 6.1267 -2.9040 2.0123 33 1 4.5820 -3.9178 -2.6446 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176327515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:13 Heat of formation + Delta-G solvation = 144.394108 kcal Electronic energy + Delta-G solvation = -20941.799350 eV Core-core repulsion = 17743.754932 eV Total energy + Delta-G solvation = -3198.044419 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -47.40208 -40.83307 -39.10049 -36.37305 -35.76892 -35.56865 -33.29846 -31.95968 -31.28049 -29.52438 -26.95197 -26.15366 -25.20263 -22.96967 -22.68248 -21.95351 -20.03587 -19.75457 -19.61025 -19.03574 -17.82929 -17.50613 -16.52581 -16.25860 -15.67318 -15.32235 -15.22508 -14.71795 -14.45991 -14.31010 -14.06360 -13.94779 -13.68724 -13.10140 -12.75286 -12.70279 -12.69130 -12.45851 -12.14054 -12.08469 -11.97403 -11.65431 -11.26767 -10.81780 -10.07961 -9.56291 -9.53091 -9.16654 -8.47450 -6.42109 -0.80046 0.35615 0.80705 0.93607 1.02806 1.48444 1.59222 1.73421 2.14839 2.26679 2.43904 2.51212 2.62849 2.81426 2.96720 3.48440 3.75849 3.78565 4.10422 4.35051 4.38032 4.45397 4.74992 4.80911 4.88395 4.95747 5.01544 5.11838 5.17997 5.32717 5.43042 5.60319 5.80021 5.87660 6.02633 6.19639 6.28975 6.52402 6.65342 6.87871 7.05901 7.62392 7.99511 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015575 B = 0.006462 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.333783 B = 4331.939998 C = 5511.062564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.017 3.983 3 Si 1.093 2.907 4 H -0.272 1.272 5 H -0.263 1.263 6 H -0.268 1.268 7 C -0.528 4.528 8 H 0.072 0.928 9 C 0.085 3.915 10 C -0.228 4.228 11 C -0.081 4.081 12 C -0.244 4.244 13 C -0.071 4.071 14 C -0.019 4.019 15 N -0.637 5.637 16 C 0.278 3.722 17 C -0.103 4.103 18 C -0.030 4.030 19 C -0.027 4.027 20 N -0.348 5.348 21 O 0.346 5.654 22 N -0.392 5.392 23 C 0.070 3.930 24 C -0.240 4.240 25 H 0.286 0.714 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.407 0.593 31 H 0.143 0.857 32 H 0.175 0.825 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.376 -4.874 1.278 7.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.203 4.203 3 Si 0.912 3.088 4 H -0.197 1.197 5 H -0.187 1.187 6 H -0.193 1.193 7 C -0.556 4.556 8 H 0.090 0.910 9 C 0.080 3.920 10 C -0.248 4.248 11 C -0.100 4.100 12 C -0.263 4.263 13 C -0.091 4.091 14 C -0.113 4.113 15 N -0.256 5.256 16 C 0.165 3.835 17 C -0.126 4.126 18 C -0.051 4.051 19 C -0.182 4.182 20 N -0.070 5.070 21 O 0.120 5.880 22 N -0.124 5.124 23 C -0.082 4.082 24 C -0.270 4.270 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.130 0.870 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.244 0.756 31 H 0.160 0.840 32 H 0.192 0.808 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.129 -3.142 1.152 6.983 hybrid contribution -1.133 -1.648 -0.279 2.019 sum 4.996 -4.790 0.873 6.976 Atomic orbital electron populations 1.70584 1.08961 1.33413 1.29380 1.27969 0.95467 1.06852 0.90020 0.83275 0.75201 0.71336 0.78941 1.19674 1.18718 1.19275 1.20441 1.05894 0.95610 1.33638 0.90979 1.17990 0.90692 0.92471 0.90797 1.20803 1.05720 0.97420 1.00833 1.20716 0.97939 0.92976 0.98334 1.20574 1.05783 0.96341 1.03622 1.21090 0.96192 0.96980 0.94796 1.17354 1.03183 0.92138 0.98596 1.41295 1.01249 1.71140 1.11942 1.17530 0.84707 0.88731 0.92500 1.20947 0.96032 0.99454 0.96171 1.21021 0.88459 0.98371 0.97225 1.24238 0.89941 1.06545 0.97516 1.74898 1.15207 1.17346 0.99528 1.85269 1.32135 1.60045 1.10536 1.75152 0.96176 1.23313 1.17796 1.22478 0.95737 1.00515 0.89498 1.18557 0.87203 1.21539 0.99738 0.90165 0.89653 0.86993 0.86068 0.86359 0.75582 0.83973 0.80751 0.83808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.55 12.37 21.83 0.27 -39.28 16 2 C 0.02 0.77 4.79 85.24 0.41 1.18 16 3 Si 1.09 41.24 30.03 68.60 2.06 43.30 16 4 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 6 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.53 -24.71 8.25 23.35 0.19 -24.52 16 8 H 0.07 3.42 6.57 -2.91 -0.02 3.40 16 9 C 0.08 3.77 4.63 -21.17 -0.10 3.67 16 10 C -0.23 -10.11 8.11 22.46 0.18 -9.93 16 11 C -0.08 -3.13 9.96 22.01 0.22 -2.91 16 12 C -0.24 -8.56 10.03 22.41 0.22 -8.33 16 13 C -0.07 -2.50 9.96 22.38 0.22 -2.28 16 14 C -0.02 -0.74 4.49 39.03 0.18 -0.56 16 15 N -0.64 -21.75 4.82 -180.26 -0.87 -22.62 16 16 C 0.28 9.30 5.35 38.12 0.20 9.50 16 17 C -0.10 -3.35 8.62 22.25 0.19 -3.16 16 18 C -0.03 -0.87 10.30 23.47 0.24 -0.63 16 19 C -0.03 -0.88 7.95 43.88 0.35 -0.53 16 20 N -0.35 -11.17 12.28 -55.05 -0.68 -11.85 16 21 O 0.35 10.95 11.67 139.29 1.63 12.58 16 22 N -0.39 -13.19 12.29 -57.27 -0.70 -13.89 16 23 C 0.07 2.39 7.76 42.55 0.33 2.72 16 24 C -0.24 -7.81 9.80 22.36 0.22 -7.59 16 25 H 0.29 14.56 7.21 -92.71 -0.67 13.89 16 26 H 0.09 4.08 6.72 -2.91 -0.02 4.06 16 27 H 0.11 3.78 8.06 -2.91 -0.02 3.75 16 28 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 29 H 0.12 3.60 8.06 -2.91 -0.02 3.57 16 30 H 0.41 12.41 8.77 -92.71 -0.81 11.59 16 31 H 0.14 4.90 6.49 -2.91 -0.02 4.88 16 32 H 0.18 3.95 8.06 -2.91 -0.02 3.93 16 33 H 0.14 4.23 8.04 -2.91 -0.02 4.21 16 Total: -1.00 -50.75 290.83 5.23 -45.52 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.46 Total: 29.63 kcal Atomic # 6 Polarization: -46.44 SS G_CDS: 3.06 Total: -43.37 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -1.98 Total: -87.64 kcal Atomic # 8 Polarization: 10.95 SS G_CDS: 1.63 Total: 12.58 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.06 Total: 43.30 kcal Total: -50.75 5.23 -45.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176327515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.912 kcal (2) G-P(sol) polarization free energy of solvation -50.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds