Wall clock time and date at job start Tue Mar 31 2020 05:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 117.00256 * 2 1 4 4 O 1.20827 * 119.99842 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00253 * 179.97438 * 3 2 1 6 6 C 1.50695 * 109.47327 * 180.02562 * 5 3 2 7 7 O 1.21295 * 119.99850 * 0.02562 * 6 5 3 8 8 N 1.34774 * 120.00473 * 180.02562 * 6 5 3 9 9 C 1.40003 * 120.00769 * 175.68401 * 8 6 5 10 10 C 1.39365 * 119.91580 * 215.20778 * 9 8 6 11 11 C 1.38360 * 120.47246 * 180.02562 * 10 9 8 12 12 C 1.38014 * 120.28760 * 0.02562 * 11 10 9 13 13 F 1.35098 * 120.09172 * 179.97438 * 12 11 10 14 14 C 1.41002 * 119.80996 * 359.97438 * 12 11 10 15 15 C 1.41295 * 120.22791 * 179.97438 * 14 12 11 16 16 H 1.08003 * 120.00114 * 324.96033 * 15 14 12 17 17 C 1.39916 * 120.00135 * 145.23432 * 15 14 12 18 18 N 1.30852 * 120.00143 * 4.44322 * 17 15 14 19 19 Si 1.86800 * 120.00133 * 184.44249 * 17 15 14 20 20 H 1.48501 * 109.47194 * 0.02562 * 19 17 15 21 21 H 1.48510 * 109.47252 * 120.00195 * 19 17 15 22 22 H 1.48499 * 109.47449 * 240.00061 * 19 17 15 23 23 C 1.38146 * 119.90757 * 35.44206 * 9 8 6 24 24 H 1.08996 * 109.47216 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46924 * 299.99903 * 1 2 3 26 26 H 1.09003 * 109.46871 * 59.99482 * 1 2 3 27 27 H 1.09001 * 109.46771 * 60.00412 * 5 3 2 28 28 H 1.08998 * 109.46949 * 300.00506 * 5 3 2 29 29 H 0.97001 * 119.99423 * 355.68190 * 8 6 5 30 30 H 1.08002 * 119.76322 * 359.97438 * 10 9 8 31 31 H 1.07999 * 119.85990 * 179.97438 * 11 10 9 32 32 H 0.97005 * 120.00444 * 179.97438 * 18 17 15 33 33 H 1.08000 * 120.14562 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 3.9937 2.7199 0.0011 7 8 3.1583 3.5993 0.0015 8 7 5.3040 3.0353 0.0011 9 6 5.7019 4.3745 -0.0896 10 6 6.8578 4.7101 -0.7922 11 6 7.2619 6.0298 -0.8887 12 6 6.5235 7.0296 -0.2888 13 9 6.9220 8.3168 -0.3851 14 6 5.3520 6.7036 0.4250 15 6 4.5896 7.7200 1.0432 16 1 5.0830 8.5783 1.4749 17 6 3.1958 7.6120 1.1010 18 7 2.6046 6.5307 0.6612 19 14 2.1790 9.0113 1.8062 20 1 3.0799 10.1128 2.2308 21 1 1.2400 9.5120 0.7702 22 1 1.4085 8.5220 2.9775 23 6 4.9502 5.3593 0.5216 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.9564 0.7806 -0.8892 28 1 3.9557 0.7808 0.8908 29 1 5.9715 2.3342 0.0641 30 1 7.4427 3.9343 -1.2639 31 1 8.1595 6.2787 -1.4353 32 1 1.6383 6.4556 0.7016 33 1 4.0569 5.0982 1.0695 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181388926.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:07 Heat of formation + Delta-G solvation = -134.706442 kcal Electronic energy + Delta-G solvation = -21620.832682 eV Core-core repulsion = 17947.623580 eV Total energy + Delta-G solvation = -3673.209102 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.15242 -40.52765 -39.23544 -37.06260 -36.08561 -34.17387 -33.09171 -31.17491 -29.67160 -28.06255 -27.05433 -25.29404 -22.35426 -21.45299 -20.57555 -19.48148 -17.74421 -17.62646 -16.61191 -16.46468 -16.05381 -15.94922 -15.58034 -15.00762 -14.70356 -14.15791 -13.93230 -13.49668 -13.25932 -13.10368 -12.83798 -12.48642 -12.09537 -12.04469 -11.73151 -11.67844 -11.41623 -11.07152 -10.91768 -10.72916 -10.55740 -10.37740 -10.15596 -9.63752 -9.17441 -9.02546 -8.75653 -7.40195 -6.87338 -6.44246 -4.34882 2.37464 2.49269 2.60886 2.82754 3.13846 3.17268 3.22813 3.34183 3.78044 4.04950 4.65812 4.70897 5.04983 5.08289 5.11719 5.20285 5.26274 5.47643 5.53183 5.91215 6.13438 6.40235 6.42760 6.79380 6.93780 7.01943 7.30561 7.46472 7.57428 7.75543 7.92210 8.07596 8.15448 8.34380 8.56829 8.90016 8.90540 8.91405 10.36325 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015958 B = 0.005885 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.155114 B = 4756.582609 C = 6396.380474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.369 6.369 3 C 0.452 3.548 4 O -0.448 6.448 5 C -0.133 4.133 6 C 0.483 3.517 7 O -0.436 6.436 8 N -0.671 5.671 9 C 0.132 3.868 10 C -0.236 4.236 11 C -0.115 4.115 12 C -0.033 4.033 13 F -0.164 7.164 14 C 0.090 3.910 15 C -0.457 4.457 16 H 0.080 0.920 17 C 0.066 3.934 18 N -0.764 5.764 19 Si 0.913 3.087 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.132 4.132 24 H 0.098 0.902 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.396 0.604 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.282 0.718 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.413 -14.214 -0.299 14.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.287 6.287 3 C 0.290 3.710 4 O -0.330 6.330 5 C -0.174 4.174 6 C 0.266 3.734 7 O -0.304 6.304 8 N -0.317 5.317 9 C 0.040 3.960 10 C -0.257 4.257 11 C -0.135 4.135 12 C -0.054 4.054 13 F -0.143 7.143 14 C 0.086 3.914 15 C -0.487 4.487 16 H 0.098 0.902 17 C -0.154 4.154 18 N -0.388 5.388 19 Si 0.738 3.262 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.200 1.200 23 C -0.153 4.153 24 H 0.116 0.884 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.230 0.770 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.592 -13.317 -0.342 13.416 hybrid contribution -0.190 0.308 0.111 0.379 sum -1.782 -13.009 -0.231 13.132 Atomic orbital electron populations 1.23197 0.76466 1.03205 1.02715 1.86447 1.23297 1.33812 1.85186 1.22983 0.91335 0.81712 0.74927 1.90900 1.66031 1.35227 1.40820 1.21184 0.90343 0.98407 1.07434 1.19919 0.83527 0.89942 0.80055 1.91117 1.49674 1.47500 1.42081 1.43225 1.06580 1.07511 1.74431 1.17632 0.96324 0.82347 0.99737 1.19875 1.00852 0.95053 1.09919 1.20243 0.99306 0.92318 1.01638 1.18037 1.01345 0.77448 1.08533 1.91265 1.90793 1.36756 1.95476 1.17568 0.89592 0.93299 0.90896 1.19433 0.91189 1.05194 1.32850 0.90229 1.25962 0.98622 0.96829 0.93983 1.69841 1.11818 1.24514 1.32640 0.86178 0.79683 0.81331 0.79035 1.18535 1.19920 1.19987 1.21703 1.01925 0.90054 1.01658 0.88382 0.91932 0.91964 0.85432 0.85440 0.77024 0.88320 0.87880 0.90604 0.82466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.44 16 2 O -0.37 -4.51 10.56 -39.25 -0.41 -4.93 16 3 C 0.45 6.76 7.95 36.01 0.29 7.05 16 4 O -0.45 -9.02 13.93 -26.86 -0.37 -9.40 16 5 C -0.13 -1.57 6.30 -29.04 -0.18 -1.76 16 6 C 0.48 8.72 7.66 -10.99 -0.08 8.64 16 7 O -0.44 -10.55 11.58 -18.97 -0.22 -10.77 16 8 N -0.67 -11.47 5.34 -9.90 -0.05 -11.52 16 9 C 0.13 2.94 6.29 -83.74 -0.53 2.41 16 10 C -0.24 -4.93 9.96 -39.12 -0.39 -5.32 16 11 C -0.12 -2.61 10.00 -39.62 -0.40 -3.00 16 12 C -0.03 -0.86 7.31 -38.62 -0.28 -1.15 16 13 F -0.16 -4.25 16.82 2.25 0.04 -4.21 16 14 C 0.09 2.51 5.55 -106.78 -0.59 1.92 16 15 C -0.46 -12.85 8.69 -37.79 -0.33 -13.17 16 16 H 0.08 2.20 7.84 -52.48 -0.41 1.78 16 17 C 0.07 1.76 5.42 -17.34 -0.09 1.66 16 18 N -0.76 -21.37 10.55 55.55 0.59 -20.79 16 19 Si 0.91 20.19 29.56 -169.99 -5.03 15.17 16 20 H -0.26 -5.70 7.11 56.52 0.40 -5.29 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 C -0.13 -3.49 7.30 -38.71 -0.28 -3.77 16 24 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 26 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 27 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.40 4.80 8.82 -40.82 -0.36 4.44 16 30 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 32 H 0.28 7.50 8.30 -40.82 -0.34 7.16 16 33 H 0.16 4.48 4.34 -52.49 -0.23 4.25 16 LS Contribution 298.75 15.07 4.50 4.50 Total: -1.00 -35.10 298.75 -5.86 -40.96 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -3.09 Total: 6.02 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.81 Total: -5.05 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.53 Total: -32.31 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -1.01 Total: -25.09 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.04 Total: -4.21 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.10 -5.86 -40.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181388926.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.748 kcal (2) G-P(sol) polarization free energy of solvation -35.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds