Wall clock time and date at job start Tue Mar 31 2020 05:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00175 * 2 1 4 4 H 1.48497 * 109.47421 * 270.00701 * 3 2 1 5 5 H 1.48507 * 109.46979 * 30.00605 * 3 2 1 6 6 H 1.48504 * 109.46980 * 150.00217 * 3 2 1 7 7 C 1.37877 * 119.99465 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99276 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00502 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47526 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47514 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47339 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21601 * 120.00472 * 359.97438 * 13 12 11 15 15 C 1.47447 * 120.00128 * 179.97438 * 13 12 11 16 16 N 1.32835 * 124.15609 * 359.97438 * 15 13 12 17 17 N 1.27415 * 118.24776 * 179.97438 * 16 15 13 18 18 S 1.56407 * 109.87609 * 359.73366 * 17 16 15 19 19 C 1.37985 * 124.15754 * 180.02562 * 15 13 12 20 20 C 1.50702 * 127.98213 * 359.97438 * 19 15 13 21 21 C 1.53000 * 117.49604 * 120.00090 * 20 19 15 22 22 C 1.52997 * 117.49669 * 188.62530 * 20 19 15 23 23 H 0.97008 * 119.99747 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46713 * 60.00324 * 9 7 2 25 25 H 1.08997 * 109.47029 * 300.00586 * 9 7 2 26 26 H 1.09006 * 109.46541 * 60.00116 * 10 9 7 27 27 H 1.08996 * 109.47077 * 300.00741 * 10 9 7 28 28 H 1.08993 * 109.47223 * 60.00020 * 11 10 9 29 29 H 1.09004 * 109.46865 * 299.99942 * 11 10 9 30 30 H 0.97001 * 120.00422 * 359.97438 * 12 11 10 31 31 H 1.09002 * 115.56044 * 334.30911 * 20 19 15 32 32 H 1.08990 * 117.49990 * 359.97438 * 21 20 19 33 33 H 1.09004 * 117.49237 * 214.97804 * 21 20 19 34 34 H 1.08999 * 117.49685 * 145.02383 * 22 20 19 35 35 H 1.08999 * 117.52022 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4320 -6.1006 -0.0006 13 6 1.9828 -7.3713 -0.0015 14 8 0.7872 -7.5935 -0.0024 15 6 2.9408 -8.4920 -0.0014 16 7 4.2610 -8.3447 -0.0010 17 7 4.9848 -9.3933 -0.0005 18 16 4.0764 -10.6665 0.0063 19 6 2.5763 -9.8229 -0.0029 20 6 1.1857 -10.4036 -0.0042 21 6 0.7960 -11.3009 -1.1805 22 6 1.0508 -11.9142 0.1979 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8896 26 1 2.8717 -3.6044 0.8895 27 1 2.8718 -3.6044 -0.8904 28 1 0.8538 -5.0446 -0.8913 29 1 0.8532 -5.0451 0.8886 30 1 3.3857 -5.9235 -0.0002 31 1 0.4100 -9.7675 0.4223 32 1 1.5452 -11.4709 -1.9536 33 1 -0.2361 -11.2552 -1.5280 34 1 0.1863 -12.2719 0.7572 35 1 1.9677 -12.4883 0.3314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188102133.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:18 Heat of formation + Delta-G solvation = 41.573183 kcal Electronic energy + Delta-G solvation = -18588.866686 eV Core-core repulsion = 15521.807568 eV Total energy + Delta-G solvation = -3067.059117 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.31690 -39.16763 -37.80399 -35.49467 -33.36120 -32.20213 -31.12910 -27.83902 -26.67327 -24.24007 -23.00959 -22.84969 -22.04253 -20.76070 -20.07865 -19.02701 -17.20385 -16.40269 -16.29448 -16.01212 -15.51087 -15.13714 -15.00710 -14.44826 -13.85944 -13.79867 -13.51943 -12.65869 -12.28673 -12.22249 -12.01721 -11.84964 -11.79723 -11.60920 -11.10898 -10.90115 -10.74368 -10.59904 -10.46734 -10.18403 -10.14801 -9.87167 -9.62584 -9.43586 -9.12418 -8.86798 -8.36602 -6.01490 -4.04291 -0.25110 0.56606 1.25870 1.26895 3.08167 3.16167 3.31914 3.38207 3.41483 3.43160 3.66266 3.91896 4.30063 4.45343 4.49190 4.64301 4.88163 5.12616 5.16909 5.34516 5.43338 5.62019 5.67821 5.74369 5.78035 6.13092 6.37333 6.58286 6.78574 6.98588 7.19962 7.61691 7.63667 7.75769 7.97269 8.15947 8.38824 9.02306 9.59957 11.09833 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.035046 B = 0.002886 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.755143 B = 9698.634441 C =10401.883449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.703 5.703 13 C 0.599 3.401 14 O -0.526 6.526 15 C -0.025 4.025 16 N -0.204 5.204 17 N -0.291 5.291 18 S 0.433 5.567 19 C -0.161 4.161 20 C -0.084 4.084 21 C -0.155 4.155 22 C -0.173 4.173 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.408 0.592 31 H 0.150 0.850 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.785 -26.699 -0.356 27.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.006 4.006 12 N -0.353 5.353 13 C 0.379 3.621 14 O -0.402 6.402 15 C -0.172 4.172 16 N -0.074 5.074 17 N -0.271 5.271 18 S 0.572 5.428 19 C -0.300 4.300 20 C -0.105 4.105 21 C -0.194 4.194 22 C -0.211 4.211 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.244 0.756 31 H 0.167 0.833 32 H 0.116 0.884 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.699 -27.152 -0.336 27.745 hybrid contribution -0.347 1.856 -0.010 1.888 sum 5.352 -25.295 -0.346 25.858 Atomic orbital electron populations 1.69968 1.06055 1.26681 1.50639 1.25026 0.94861 0.99306 0.95266 0.86578 0.79828 0.83392 0.78107 1.20655 1.21213 1.19862 1.21211 0.93055 0.90918 1.50861 0.92590 1.19026 0.93805 0.90795 0.97678 1.21915 0.99845 0.93061 1.01222 1.21777 0.91720 0.84769 1.02368 1.46098 1.11840 1.05055 1.72311 1.16620 0.86174 0.81598 0.77687 1.90787 1.14595 1.84097 1.50736 1.22617 0.90836 0.94775 1.09006 1.71521 1.02840 1.20769 1.12237 1.78698 1.26093 0.98668 1.23629 1.81371 0.89756 1.19459 1.52205 1.27052 1.03165 0.96169 1.03585 1.20513 0.91010 0.93328 1.05665 1.23143 1.03763 1.01206 0.91287 1.23226 1.04273 0.93264 1.00312 0.92938 0.96223 0.96220 0.92504 0.92516 0.91256 0.91268 0.75628 0.83270 0.88438 0.87140 0.87111 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 10 C -0.12 -2.43 5.27 -26.74 -0.14 -2.57 16 11 C 0.12 2.03 5.67 -4.05 -0.02 2.01 16 12 N -0.70 -10.90 5.55 -61.39 -0.34 -11.25 16 13 C 0.60 9.34 7.81 -12.51 -0.10 9.25 16 14 O -0.53 -9.18 14.75 5.28 0.08 -9.10 16 15 C -0.03 -0.34 6.87 -83.78 -0.58 -0.92 16 16 N -0.20 -2.79 11.24 32.74 0.37 -2.42 16 17 N -0.29 -3.54 12.49 60.35 0.75 -2.79 16 18 S 0.43 3.65 22.50 -107.50 -2.42 1.23 16 19 C -0.16 -1.73 6.33 -34.40 -0.22 -1.94 16 20 C -0.08 -0.77 5.57 -91.77 -0.51 -1.29 16 21 C -0.16 -1.06 10.23 -26.73 -0.27 -1.34 16 22 C -0.17 -1.01 10.09 -26.73 -0.27 -1.28 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.41 5.79 8.06 -40.82 -0.33 5.46 16 31 H 0.15 1.65 6.64 -51.93 -0.34 1.31 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.44 7.48 -51.93 -0.39 0.05 16 LS Contribution 319.56 15.07 4.82 4.82 Total: -1.00 -32.09 319.56 -8.10 -40.19 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -4.41 Total: -0.14 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -2.66 Total: -11.03 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 1.52 Total: -42.57 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -2.42 Total: 1.23 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.09 -8.10 -40.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188102133.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.760 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds