Wall clock time and date at job start Tue Mar 31 2020 05:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00175 * 2 1 4 4 H 1.48497 * 109.47421 * 270.00701 * 3 2 1 5 5 H 1.48507 * 109.46979 * 30.00605 * 3 2 1 6 6 H 1.48504 * 109.46980 * 150.00217 * 3 2 1 7 7 C 1.37877 * 119.99465 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99276 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00502 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47526 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47514 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47339 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21601 * 120.00472 * 359.97438 * 13 12 11 15 15 C 1.47447 * 120.00128 * 179.97438 * 13 12 11 16 16 N 1.32835 * 124.15609 * 359.97438 * 15 13 12 17 17 N 1.27415 * 118.24776 * 179.97438 * 16 15 13 18 18 S 1.56407 * 109.87609 * 359.73366 * 17 16 15 19 19 C 1.37985 * 124.15754 * 180.02562 * 15 13 12 20 20 C 1.50702 * 127.98213 * 359.97438 * 19 15 13 21 21 C 1.53000 * 117.49604 * 120.00090 * 20 19 15 22 22 C 1.52997 * 117.49669 * 188.62530 * 20 19 15 23 23 H 0.97008 * 119.99747 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46713 * 60.00324 * 9 7 2 25 25 H 1.08997 * 109.47029 * 300.00586 * 9 7 2 26 26 H 1.09006 * 109.46541 * 60.00116 * 10 9 7 27 27 H 1.08996 * 109.47077 * 300.00741 * 10 9 7 28 28 H 1.08993 * 109.47223 * 60.00020 * 11 10 9 29 29 H 1.09004 * 109.46865 * 299.99942 * 11 10 9 30 30 H 0.97001 * 120.00422 * 359.97438 * 12 11 10 31 31 H 1.09002 * 115.56044 * 334.30911 * 20 19 15 32 32 H 1.08990 * 117.49990 * 359.97438 * 21 20 19 33 33 H 1.09004 * 117.49237 * 214.97804 * 21 20 19 34 34 H 1.08999 * 117.49685 * 145.02383 * 22 20 19 35 35 H 1.08999 * 117.52022 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4320 -6.1006 -0.0006 13 6 1.9828 -7.3713 -0.0015 14 8 0.7872 -7.5935 -0.0024 15 6 2.9408 -8.4920 -0.0014 16 7 4.2610 -8.3447 -0.0010 17 7 4.9848 -9.3933 -0.0005 18 16 4.0764 -10.6665 0.0063 19 6 2.5763 -9.8229 -0.0029 20 6 1.1857 -10.4036 -0.0042 21 6 0.7960 -11.3009 -1.1805 22 6 1.0508 -11.9142 0.1979 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5570 0.8896 26 1 2.8717 -3.6044 0.8895 27 1 2.8718 -3.6044 -0.8904 28 1 0.8538 -5.0446 -0.8913 29 1 0.8532 -5.0451 0.8886 30 1 3.3857 -5.9235 -0.0002 31 1 0.4100 -9.7675 0.4223 32 1 1.5452 -11.4709 -1.9536 33 1 -0.2361 -11.2552 -1.5280 34 1 0.1863 -12.2719 0.7572 35 1 1.9677 -12.4883 0.3314 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188102133.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:17 Heat of formation + Delta-G solvation = 20.089816 kcal Electronic energy + Delta-G solvation = -18589.798274 eV Core-core repulsion = 15521.807568 eV Total energy + Delta-G solvation = -3067.990706 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.26578 -40.37697 -38.42823 -37.02733 -35.24671 -33.39177 -32.68640 -29.11323 -28.09587 -25.71804 -24.21113 -23.33696 -23.14326 -22.36100 -21.17056 -20.06770 -18.60481 -18.00330 -17.32419 -17.04280 -16.69506 -16.48143 -16.41628 -15.65133 -15.27163 -15.11760 -14.30854 -14.27840 -13.79554 -13.55562 -13.42989 -12.91737 -12.76394 -12.58132 -12.51632 -12.40314 -12.30313 -11.91880 -11.70554 -11.54901 -11.27857 -11.23733 -11.05876 -11.04318 -10.55510 -10.39500 -10.17418 -8.20124 -6.31180 -1.06540 -0.22645 0.24025 0.45163 1.41256 1.42424 1.53528 1.94512 1.99243 2.41863 2.68484 2.82623 3.13649 3.21158 3.52464 3.87137 3.94626 4.01686 4.13784 4.18111 4.43697 4.52533 4.71320 4.88971 4.91368 4.96532 5.11178 5.14308 5.17519 5.30588 5.50869 5.69874 5.83582 6.17088 6.23532 6.49595 6.85619 6.94611 7.38152 8.91927 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.035046 B = 0.002886 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.755143 B = 9698.634441 C =10401.883449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.026 3.974 10 C -0.105 4.105 11 C 0.130 3.870 12 N -0.700 5.700 13 C 0.599 3.401 14 O -0.551 6.551 15 C -0.052 4.052 16 N -0.226 5.226 17 N -0.329 5.329 18 S 0.542 5.458 19 C -0.165 4.165 20 C -0.117 4.117 21 C -0.151 4.151 22 C -0.147 4.147 23 H 0.264 0.736 24 H -0.004 1.004 25 H -0.004 1.004 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.416 0.584 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.125 0.875 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.362 -28.668 -0.446 29.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.012 4.012 10 C -0.143 4.143 11 C 0.007 3.993 12 N -0.351 5.351 13 C 0.381 3.619 14 O -0.429 6.429 15 C -0.199 4.199 16 N -0.095 5.095 17 N -0.309 5.309 18 S 0.681 5.319 19 C -0.303 4.303 20 C -0.138 4.138 21 C -0.190 4.190 22 C -0.184 4.184 23 H 0.072 0.928 24 H 0.014 0.986 25 H 0.014 0.986 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.253 0.747 31 H 0.142 0.858 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.143 0.857 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.310 -29.133 -0.426 30.039 hybrid contribution -0.881 2.277 0.017 2.442 sum 6.429 -26.856 -0.409 27.617 Atomic orbital electron populations 1.70105 1.07824 1.27805 1.51626 1.25990 0.95766 1.03423 0.94750 0.85434 0.78666 0.78395 0.78470 1.19804 1.20851 1.18658 1.21677 0.93688 0.92147 1.50574 0.91833 1.18922 0.94310 0.92581 0.95361 1.21625 0.98604 0.92007 1.02035 1.21390 0.91586 0.84656 1.01655 1.45915 1.11781 1.04735 1.72637 1.16883 0.86349 0.81923 0.76721 1.90769 1.15798 1.84560 1.51754 1.22288 0.90817 0.94982 1.11840 1.71550 1.02784 1.21881 1.13277 1.78342 1.27654 0.99978 1.24879 1.80892 0.86374 1.15729 1.48942 1.27397 1.05207 0.95916 1.01829 1.20493 0.89775 0.95100 1.08477 1.23292 1.04367 0.99707 0.91659 1.23403 1.05662 0.90238 0.99133 0.92756 0.98582 0.98581 0.91625 0.91614 0.92061 0.92072 0.74739 0.85826 0.87438 0.86712 0.85673 0.86412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.54 -30.79 9.11 25.60 0.23 -30.56 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.10 -4.20 5.27 30.59 0.16 -4.04 16 11 C 0.13 4.71 5.67 86.38 0.49 5.20 16 12 N -0.70 -22.11 5.55 -466.38 -2.59 -24.69 16 13 C 0.60 19.14 7.81 86.67 0.68 19.81 16 14 O -0.55 -19.92 14.75 -4.04 -0.06 -19.98 16 15 C -0.05 -1.39 6.87 41.36 0.28 -1.11 16 16 N -0.23 -6.08 11.24 -50.34 -0.57 -6.64 16 17 N -0.33 -7.50 12.49 37.02 0.46 -7.04 16 18 S 0.54 7.64 22.50 -56.49 -1.27 6.37 16 19 C -0.17 -3.33 6.33 25.63 0.16 -3.17 16 20 C -0.12 -2.02 5.57 -11.54 -0.06 -2.09 16 21 C -0.15 -1.74 10.23 30.60 0.31 -1.43 16 22 C -0.15 -1.26 10.09 30.60 0.31 -0.96 16 23 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 24 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 25 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 27 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.42 11.85 8.06 -92.71 -0.75 11.10 16 31 H 0.12 2.82 6.64 -2.39 -0.02 2.80 16 32 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.12 0.54 7.48 -2.39 -0.02 0.52 16 Total: -1.00 -70.78 319.56 1.84 -68.94 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.37 Total: 9.98 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 3.18 Total: -16.45 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -2.41 Total: -95.27 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.06 Total: -19.98 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 7.64 SS G_CDS: -1.27 Total: 6.37 kcal Total: -70.78 1.84 -68.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188102133.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.030 kcal (2) G-P(sol) polarization free energy of solvation -70.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds