Wall clock time and date at job start Tue Mar 31 2020 05:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42895 * 114.17025 * 139.67367 * 12 11 10 14 14 C 1.42899 * 114.00481 * 116.15468 * 13 12 11 15 15 H 1.09006 * 109.47029 * 300.00104 * 14 13 12 16 16 Cl 1.80305 * 109.47119 * 59.99833 * 14 13 12 17 17 C 1.50701 * 109.47741 * 179.97438 * 14 13 12 18 18 C 1.38235 * 119.99588 * 329.73072 * 17 14 13 19 19 C 1.38237 * 119.99518 * 179.81022 * 18 17 14 20 20 C 1.38236 * 120.00121 * 0.39153 * 19 18 17 21 21 C 1.38238 * 120.00015 * 359.85628 * 20 19 18 22 22 C 1.38231 * 119.99728 * 359.95882 * 21 20 19 23 23 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 26 26 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 27 27 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 28 28 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 29 29 H 1.09011 * 114.34125 * 272.36207 * 12 11 10 30 30 H 1.07993 * 120.00368 * 359.97438 * 18 17 14 31 31 H 1.08001 * 120.00139 * 180.23080 * 19 18 17 32 32 H 1.07998 * 120.00166 * 179.84045 * 20 19 18 33 33 H 1.07998 * 119.99778 * 179.97438 * 21 20 19 34 34 H 1.08001 * 119.99878 * 179.97438 * 22 21 20 35 35 H 1.09000 * 113.47556 * 253.46531 * 23 10 9 36 36 H 1.08997 * 113.47949 * 23.93922 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 1.7491 -6.4380 -1.7035 14 6 2.5901 -7.4751 -2.2127 15 1 3.4065 -7.0332 -2.7840 16 17 3.2649 -8.4299 -0.8401 17 6 1.7842 -8.3820 -3.1066 18 6 0.4354 -8.5675 -2.8675 19 6 -0.3047 -9.3964 -3.6898 20 6 0.3058 -10.0461 -4.7463 21 6 1.6557 -9.8646 -4.9822 22 6 2.3949 -9.0328 -4.1622 23 6 1.5184 -4.8986 0.2386 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 0.8897 26 1 0.6240 -2.5568 -0.8903 27 1 1.6756 -3.8466 -2.0765 28 1 3.4598 -3.7930 -1.7440 29 1 3.3701 -5.8955 -0.4633 30 1 -0.0408 -8.0628 -2.0400 31 1 -1.3593 -9.5384 -3.5054 32 1 -0.2719 -10.6957 -5.3872 33 1 2.1327 -10.3726 -5.8074 34 1 3.4497 -8.8913 -4.3463 35 1 1.6915 -5.3047 1.2352 36 1 0.4631 -4.8832 -0.0336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223831893.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:20 Heat of formation + Delta-G solvation = 11.253757 kcal Electronic energy + Delta-G solvation = -18957.007607 eV Core-core repulsion = 15854.297283 eV Total energy + Delta-G solvation = -3102.710324 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.91649 -39.29062 -37.03123 -35.55134 -32.90400 -31.99998 -31.13313 -29.16960 -26.22816 -25.47225 -24.85798 -22.86220 -21.64284 -21.51569 -19.55079 -17.44599 -17.13076 -16.28879 -16.06690 -15.80722 -15.08123 -14.86919 -14.39185 -14.16446 -13.81020 -13.60501 -13.39172 -12.85672 -12.37328 -12.17564 -12.01890 -11.76222 -11.59345 -11.40078 -11.26642 -10.95931 -10.94077 -10.58362 -10.43956 -10.24240 -9.79701 -9.47412 -9.24619 -9.14863 -9.05565 -8.44773 -7.97231 -6.04742 -4.06182 0.85708 1.18228 2.14009 3.26158 3.31869 3.37456 3.41858 3.63339 4.31690 4.42064 4.54463 4.73320 4.77077 4.87865 4.90800 4.94183 5.22817 5.26943 5.30648 5.35285 5.63783 5.71717 5.82617 6.00650 6.09113 6.17283 6.21335 6.27704 6.29530 6.33128 6.54187 6.71494 7.04192 7.16972 7.61949 7.82623 8.06987 8.41998 9.01009 9.57869 11.06383 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.028225 B = 0.003366 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.793848 B = 8315.961345 C = 8727.801610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.287 1.287 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.161 3.839 10 N -0.461 5.461 11 C -0.003 4.003 12 C 0.042 3.958 13 O -0.346 6.346 14 C 0.212 3.788 15 H 0.106 0.894 16 Cl -0.198 7.198 17 C -0.099 4.099 18 C -0.075 4.075 19 C -0.125 4.125 20 C -0.109 4.109 21 C -0.125 4.125 22 C -0.096 4.096 23 C 0.001 3.999 24 H 0.262 0.738 25 H 0.030 0.970 26 H 0.006 0.994 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.133 0.867 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.872 -20.827 -8.963 22.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.213 1.213 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.035 3.965 10 N -0.186 5.186 11 C -0.133 4.133 12 C -0.015 4.015 13 O -0.263 6.263 14 C 0.128 3.872 15 H 0.123 0.877 16 Cl -0.172 7.172 17 C -0.100 4.100 18 C -0.093 4.093 19 C -0.143 4.143 20 C -0.127 4.127 21 C -0.143 4.143 22 C -0.114 4.114 23 C -0.128 4.128 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.023 0.977 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.100 0.900 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.090 -20.475 -8.454 22.366 hybrid contribution -0.141 0.810 -0.374 0.904 sum 2.949 -19.664 -8.828 21.756 Atomic orbital electron populations 1.69960 1.06081 1.26859 1.51012 1.25014 0.94905 0.99426 0.95392 0.86458 0.79691 0.82880 0.78155 1.20588 1.19814 1.21280 1.21090 0.93608 0.89696 1.50039 0.91812 1.20275 0.90530 0.88783 0.96875 1.68996 1.33814 1.01544 1.14204 1.24257 1.02565 0.91951 0.94482 1.24351 0.97431 0.87920 0.91819 1.88107 1.36734 1.37266 1.64209 1.23918 0.92798 0.84918 0.85534 0.87673 1.98769 1.87192 1.76839 1.54431 1.19458 0.94762 0.99362 0.96402 1.21099 0.93116 0.96047 0.99036 1.21215 1.00206 0.97339 0.95524 1.21255 0.94996 0.99051 0.97427 1.21069 0.94361 0.99128 0.99734 1.20913 1.00029 0.96397 0.94066 1.24038 0.97867 0.92716 0.98181 0.92873 0.95146 0.97651 0.90896 0.90308 0.87534 0.84871 0.85627 0.85889 0.85659 0.85644 0.90002 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.52 9.39 -34.44 -0.32 -14.84 16 8 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.16 4.26 4.57 -4.98 -0.02 4.24 16 10 N -0.46 -10.13 6.32 -246.08 -1.55 -11.68 16 11 C 0.00 -0.06 7.55 -7.54 -0.06 -0.12 16 12 C 0.04 0.67 4.26 -26.20 -0.11 0.55 16 13 O -0.35 -5.06 9.26 -35.23 -0.33 -5.39 16 14 C 0.21 2.55 3.52 36.01 0.13 2.68 16 15 H 0.11 1.10 8.09 -51.93 -0.42 0.68 16 16 Cl -0.20 -2.46 27.46 -51.86 -1.42 -3.89 16 17 C -0.10 -1.12 5.16 -104.62 -0.54 -1.66 16 18 C -0.07 -0.85 9.35 -39.58 -0.37 -1.22 16 19 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 20 C -0.11 -0.92 10.05 -39.58 -0.40 -1.32 16 21 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 22 C -0.10 -0.90 9.70 -39.59 -0.38 -1.29 16 23 C 0.00 0.02 7.52 -7.53 -0.06 -0.03 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.03 0.86 8.08 -51.92 -0.42 0.44 16 26 H 0.01 0.16 7.30 -51.93 -0.38 -0.22 16 27 H 0.07 1.44 7.42 -51.93 -0.39 1.06 16 28 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 29 H 0.11 1.58 6.93 -51.92 -0.36 1.22 16 30 H 0.13 1.59 7.49 -52.49 -0.39 1.20 16 31 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 LS Contribution 321.66 15.07 4.85 4.85 Total: -1.00 -30.97 321.66 -10.62 -41.59 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -4.85 Total: -1.52 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -3.03 Total: -14.59 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.82 Total: -37.89 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.33 Total: -5.39 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 17 Polarization: -2.46 SS G_CDS: -1.42 Total: -3.89 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.97 -10.62 -41.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223831893.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.844 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds