Wall clock time and date at job start Tue Mar 31 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 O 1.42895 * 114.17025 * 139.67367 * 12 11 10 14 14 C 1.42899 * 114.00481 * 116.15468 * 13 12 11 15 15 H 1.09006 * 109.47029 * 300.00104 * 14 13 12 16 16 Cl 1.80305 * 109.47119 * 59.99833 * 14 13 12 17 17 C 1.50701 * 109.47741 * 179.97438 * 14 13 12 18 18 C 1.38235 * 119.99588 * 329.73072 * 17 14 13 19 19 C 1.38237 * 119.99518 * 179.81022 * 18 17 14 20 20 C 1.38236 * 120.00121 * 0.39153 * 19 18 17 21 21 C 1.38238 * 120.00015 * 359.85628 * 20 19 18 22 22 C 1.38231 * 119.99728 * 359.95882 * 21 20 19 23 23 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 26 26 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 27 27 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 28 28 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 29 29 H 1.09011 * 114.34125 * 272.36207 * 12 11 10 30 30 H 1.07993 * 120.00368 * 359.97438 * 18 17 14 31 31 H 1.08001 * 120.00139 * 180.23080 * 19 18 17 32 32 H 1.07998 * 120.00166 * 179.84045 * 20 19 18 33 33 H 1.07998 * 119.99778 * 179.97438 * 21 20 19 34 34 H 1.08001 * 119.99878 * 179.97438 * 22 21 20 35 35 H 1.09000 * 113.47556 * 253.46531 * 23 10 9 36 36 H 1.08997 * 113.47949 * 23.93922 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 8 1.7491 -6.4380 -1.7035 14 6 2.5901 -7.4751 -2.2127 15 1 3.4065 -7.0332 -2.7840 16 17 3.2649 -8.4299 -0.8401 17 6 1.7842 -8.3820 -3.1066 18 6 0.4354 -8.5675 -2.8675 19 6 -0.3047 -9.3964 -3.6898 20 6 0.3058 -10.0461 -4.7463 21 6 1.6557 -9.8646 -4.9822 22 6 2.3949 -9.0328 -4.1622 23 6 1.5184 -4.8986 0.2386 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 0.8897 26 1 0.6240 -2.5568 -0.8903 27 1 1.6756 -3.8466 -2.0765 28 1 3.4598 -3.7930 -1.7440 29 1 3.3701 -5.8955 -0.4633 30 1 -0.0408 -8.0628 -2.0400 31 1 -1.3593 -9.5384 -3.5054 32 1 -0.2719 -10.6957 -5.3872 33 1 2.1327 -10.3726 -5.8074 34 1 3.4497 -8.8913 -4.3463 35 1 1.6915 -5.3047 1.2352 36 1 0.4631 -4.8832 -0.0336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223831893.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:19 Heat of formation + Delta-G solvation = -8.521352 kcal Electronic energy + Delta-G solvation = -18957.865120 eV Core-core repulsion = 15854.297283 eV Total energy + Delta-G solvation = -3103.567837 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.25549 -40.21437 -38.20888 -36.59186 -35.02775 -32.87568 -31.84502 -31.02487 -27.49791 -27.00889 -26.43082 -23.79668 -23.26661 -22.35322 -21.04883 -18.77052 -18.35424 -17.94537 -17.15817 -16.95714 -16.44810 -16.14420 -15.74567 -15.52690 -15.12300 -14.61495 -14.28535 -14.19099 -13.78971 -13.73444 -13.54470 -13.13574 -13.06276 -12.72960 -12.49823 -12.27994 -12.18907 -12.01686 -11.91590 -11.70982 -11.44835 -11.22097 -10.78540 -10.63443 -9.85961 -9.82498 -9.76871 -8.24808 -6.35708 0.08471 0.46956 1.23573 1.39828 1.41809 1.53233 2.15430 2.39217 2.88122 3.07448 3.29010 3.34636 3.43752 3.78938 3.92177 4.08207 4.14159 4.21670 4.28044 4.45559 4.56941 4.60102 4.64297 4.67516 4.78585 4.86616 4.95385 5.01333 5.12331 5.48897 5.49655 5.53298 5.58408 5.71656 5.87250 6.02417 6.03485 6.35977 6.78178 7.33950 8.86705 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.028225 B = 0.003366 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.793848 B = 8315.961345 C = 8727.801610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.264 1.264 6 H -0.280 1.280 7 C -0.528 4.528 8 H 0.062 0.938 9 C 0.177 3.823 10 N -0.477 5.477 11 C -0.007 4.007 12 C 0.075 3.925 13 O -0.356 6.356 14 C 0.211 3.789 15 H 0.126 0.874 16 Cl -0.202 7.202 17 C -0.118 4.118 18 C -0.099 4.099 19 C -0.134 4.134 20 C -0.109 4.109 21 C -0.125 4.125 22 C -0.100 4.100 23 C -0.004 4.004 24 H 0.266 0.734 25 H 0.002 0.998 26 H -0.020 1.020 27 H 0.057 0.943 28 H 0.092 0.908 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.139 0.861 32 H 0.150 0.850 33 H 0.154 0.846 34 H 0.145 0.855 35 H 0.096 0.904 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.345 -21.822 -10.264 24.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.188 1.188 6 H -0.205 1.205 7 C -0.566 4.566 8 H 0.080 0.920 9 C 0.050 3.950 10 N -0.201 5.201 11 C -0.136 4.136 12 C 0.017 3.983 13 O -0.273 6.273 14 C 0.128 3.872 15 H 0.143 0.857 16 Cl -0.176 7.176 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.152 4.152 20 C -0.127 4.127 21 C -0.142 4.142 22 C -0.118 4.118 23 C -0.133 4.133 24 H 0.075 0.925 25 H 0.021 0.979 26 H -0.002 1.002 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.143 0.857 30 H 0.134 0.866 31 H 0.157 0.843 32 H 0.168 0.832 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.115 0.885 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.571 -21.498 -9.758 24.047 hybrid contribution -0.647 0.988 -0.029 1.182 sum 3.924 -20.509 -9.786 23.061 Atomic orbital electron populations 1.70085 1.07778 1.28094 1.51518 1.25976 0.95824 1.03410 0.94565 0.85317 0.78511 0.77852 0.78548 1.19736 1.18777 1.20522 1.21414 0.93682 0.91020 1.50481 0.92016 1.19927 0.90537 0.90286 0.94266 1.68883 1.32904 1.01721 1.16563 1.24282 1.02553 0.94094 0.92718 1.23919 0.97155 0.86903 0.90289 1.88104 1.37477 1.37731 1.64000 1.24195 0.93282 0.84416 0.85336 0.85698 1.98768 1.87139 1.76897 1.54827 1.19523 0.94749 1.00239 0.97327 1.21122 0.93733 0.97327 0.99560 1.21448 1.00960 0.97083 0.95687 1.21629 0.95446 0.98609 0.96977 1.21472 0.94388 0.98402 0.99966 1.21198 1.01164 0.96073 0.93410 1.24085 0.97689 0.91393 1.00098 0.92531 0.97950 1.00193 0.92434 0.89017 0.85746 0.86590 0.84319 0.83212 0.82813 0.83711 0.88541 0.92190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.53 -30.89 9.39 25.60 0.24 -30.65 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.53 16 9 C 0.18 9.73 4.57 85.55 0.39 10.12 16 10 N -0.48 -21.34 6.32 -932.85 -5.89 -27.23 16 11 C -0.01 -0.27 7.55 83.58 0.63 0.36 16 12 C 0.08 2.33 4.26 30.94 0.13 2.46 16 13 O -0.36 -10.29 9.26 -148.98 -1.38 -11.66 16 14 C 0.21 4.82 3.52 71.24 0.25 5.07 16 15 H 0.13 2.35 8.09 -2.38 -0.02 2.33 16 16 Cl -0.20 -4.76 27.46 -2.72 -0.07 -4.84 16 17 C -0.12 -2.54 5.16 -19.87 -0.10 -2.64 16 18 C -0.10 -2.25 9.35 22.27 0.21 -2.04 16 19 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 20 C -0.11 -1.56 10.05 22.27 0.22 -1.33 16 21 C -0.12 -1.72 10.05 22.27 0.22 -1.49 16 22 C -0.10 -1.67 9.70 22.27 0.22 -1.45 16 23 C 0.00 -0.13 7.52 83.58 0.63 0.50 16 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 25 H 0.00 0.14 8.08 -2.38 -0.02 0.12 16 26 H -0.02 -1.16 7.30 -2.39 -0.02 -1.17 16 27 H 0.06 2.35 7.42 -2.39 -0.02 2.33 16 28 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 29 H 0.13 3.46 6.93 -2.38 -0.02 3.45 16 30 H 0.12 2.92 7.49 -2.91 -0.02 2.90 16 31 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 32 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 35 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 36 H 0.06 2.34 7.91 -2.39 -0.02 2.32 16 Total: -1.00 -67.58 321.66 -0.24 -67.82 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 1.06 Total: 8.64 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 3.73 Total: -22.80 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -5.61 Total: -84.05 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -1.38 Total: -11.66 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 17 Polarization: -4.76 SS G_CDS: -0.07 Total: -4.84 kcal Total: -67.58 -0.24 -67.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223831893.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.303 kcal (2) G-P(sol) polarization free energy of solvation -67.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds