Wall clock time and date at job start Tue Mar 31 2020 05:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39490 * 120.11205 * 320.89556 * 3 2 1 5 5 C 1.39002 * 119.74867 * 179.97438 * 4 3 2 6 6 C 1.48401 * 120.01322 * 180.02562 * 5 4 3 7 7 C 1.39332 * 120.12111 * 359.70149 * 6 5 4 8 8 C 1.38019 * 119.87606 * 179.76611 * 7 6 5 9 9 C 1.38316 * 120.11957 * 0.53210 * 8 7 6 10 10 C 1.50710 * 119.87617 * 179.72109 * 9 8 7 11 11 C 1.50702 * 109.47037 * 269.97606 * 10 9 8 12 12 H 1.08001 * 119.99651 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00153 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00004 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99704 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47112 * 90.00080 * 15 13 11 17 17 H 1.48495 * 109.46804 * 210.00038 * 15 13 11 18 18 H 1.48498 * 109.47007 * 329.99775 * 15 13 11 19 19 C 1.38318 * 120.24702 * 359.69933 * 9 8 7 20 20 C 1.38016 * 120.11882 * 0.04139 * 19 9 8 21 21 C 1.39516 * 119.96977 * 359.97438 * 5 4 3 22 22 C 1.38006 * 120.22751 * 0.02562 * 21 5 4 23 23 C 1.38363 * 120.25225 * 0.25952 * 22 21 5 24 24 F 1.35095 * 119.98771 * 179.72524 * 23 22 21 25 25 H 1.08007 * 120.12613 * 359.97438 * 4 3 2 26 26 H 1.08001 * 120.06401 * 0.02562 * 7 6 5 27 27 H 1.08002 * 119.94139 * 180.25072 * 8 7 6 28 28 H 1.08995 * 109.47352 * 29.97589 * 10 9 8 29 29 H 1.09002 * 109.46831 * 149.97912 * 10 9 8 30 30 H 0.96995 * 119.99786 * 180.02562 * 14 13 11 31 31 H 1.08004 * 119.94204 * 180.02562 * 19 9 8 32 32 H 1.07997 * 120.06678 * 180.02562 * 20 19 9 33 33 H 1.07999 * 119.88291 * 179.97438 * 21 5 4 34 34 H 1.08002 * 119.87040 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 -0.9354 0.7611 5 6 4.6582 -0.9283 0.7551 6 6 5.4091 -1.9218 1.5622 7 6 4.7234 -2.8592 2.3319 8 6 5.4268 -3.7840 3.0768 9 6 6.8099 -3.7743 3.0688 10 6 7.5725 -4.7827 3.8891 11 6 7.8273 -4.2218 5.2645 12 1 7.4722 -3.2341 5.5191 13 6 8.5138 -4.9694 6.1976 14 7 8.7357 -4.4801 7.3980 15 14 9.1286 -6.6775 5.7568 16 1 10.4987 -6.5800 5.1926 17 1 9.1545 -7.5242 6.9764 18 1 8.2211 -7.2858 4.7511 19 6 7.4958 -2.8430 2.3102 20 6 6.8025 -1.9170 1.5574 21 6 5.3471 0.0126 -0.0108 22 6 4.6532 0.9382 -0.7634 23 6 3.2695 0.9433 -0.7597 24 9 2.5957 1.8553 -1.4940 25 1 2.7324 -1.6630 1.3528 26 1 3.6434 -2.8648 2.3424 27 1 4.8963 -4.5136 3.6707 28 1 6.9885 -5.6992 3.9730 29 1 8.5237 -5.0011 3.4038 30 1 9.2190 -5.0060 8.0543 31 1 8.5758 -2.8402 2.3072 32 1 7.3388 -1.1905 0.9651 33 1 6.4270 0.0172 -0.0141 34 1 5.1923 1.6643 -1.3539 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235894305.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:04 Heat of formation + Delta-G solvation = 25.662268 kcal Electronic energy + Delta-G solvation = -19354.645958 eV Core-core repulsion = 16131.532979 eV Total energy + Delta-G solvation = -3223.112979 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.33419 -40.02923 -38.42464 -36.71741 -33.90734 -32.34478 -32.05108 -30.51921 -30.17860 -27.14807 -24.71436 -23.82653 -22.36973 -21.74240 -20.42135 -19.08652 -17.72108 -16.86644 -16.83844 -16.27407 -16.10357 -15.12324 -14.57490 -14.39388 -14.25932 -14.04490 -13.89890 -13.66240 -13.56738 -13.06884 -13.03078 -12.93748 -12.62603 -12.20469 -11.94099 -11.76448 -11.63368 -11.35057 -10.74927 -10.39365 -10.26816 -10.07575 -9.55639 -9.50535 -9.25024 -8.67065 -8.56653 -7.66843 -6.15710 -4.16063 0.21866 0.59002 1.81030 1.83279 2.32177 2.70697 3.22307 3.31019 3.32404 3.41770 3.43022 3.73031 4.29174 4.30079 4.33683 4.45013 4.69103 4.81259 5.08083 5.17170 5.19363 5.35954 5.52535 5.58474 5.66149 5.69543 5.77668 5.94138 6.12212 6.27258 6.33431 6.44157 6.78628 6.81116 6.87391 6.89653 7.14252 7.38216 7.42243 7.59821 8.39247 8.88743 9.43849 10.97023 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.035141 B = 0.003072 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.596167 B = 9112.528570 C = 9512.540010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C 0.255 3.745 3 C -0.056 4.056 4 C -0.046 4.046 5 C -0.025 4.025 6 C -0.092 4.092 7 C -0.102 4.102 8 C -0.121 4.121 9 C -0.013 4.013 10 C 0.010 3.990 11 C -0.516 4.516 12 H 0.074 0.926 13 C 0.070 3.930 14 N -0.897 5.897 15 Si 0.878 3.122 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.264 1.264 19 C -0.122 4.122 20 C -0.101 4.101 21 C -0.062 4.062 22 C -0.145 4.145 23 C 0.130 3.870 24 F -0.131 7.131 25 H 0.146 0.854 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.030 0.970 29 H 0.026 0.974 30 H 0.265 0.735 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.874 7.852 -16.589 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.081 5.081 2 C -0.060 4.060 3 C -0.060 4.060 4 C -0.066 4.066 5 C -0.025 4.025 6 C -0.092 4.092 7 C -0.120 4.120 8 C -0.139 4.139 9 C -0.013 4.013 10 C -0.027 4.027 11 C -0.554 4.554 12 H 0.092 0.908 13 C -0.132 4.132 14 N -0.536 5.536 15 Si 0.705 3.295 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.189 1.189 19 C -0.140 4.140 20 C -0.119 4.119 21 C -0.081 4.081 22 C -0.164 4.164 23 C 0.109 3.891 24 F -0.109 7.109 25 H 0.164 0.836 26 H 0.136 0.864 27 H 0.142 0.858 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.163 0.837 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.593 7.851 -16.435 19.733 hybrid contribution 0.709 -0.642 -0.080 0.960 sum -6.884 7.208 -16.516 19.290 Atomic orbital electron populations 1.81242 1.11776 1.07349 1.07773 1.25351 0.92333 0.94212 0.94144 1.15860 0.84890 1.00718 1.04521 1.21201 0.93497 0.96112 0.95810 1.18800 0.91968 0.95381 0.96346 1.18360 0.93049 0.97254 1.00583 1.21097 0.99134 0.95069 0.96736 1.21039 0.94158 0.99451 0.99267 1.20464 0.93660 0.95253 0.91908 1.18882 0.94917 0.93522 0.95347 1.20888 1.36585 1.04022 0.93933 0.90752 1.24998 0.95385 0.98021 0.94760 1.69890 1.41100 1.37932 1.04642 0.86806 0.79752 0.84731 0.78239 1.20103 1.21201 1.18903 1.21040 1.00212 0.95481 0.97241 1.21075 0.92734 0.98714 0.99357 1.21387 1.01146 0.92296 0.93239 1.21017 0.91217 1.01693 1.02440 1.17640 0.90105 0.88354 0.93049 1.91536 1.80453 1.64347 1.74609 0.83629 0.86448 0.85849 0.95209 0.95626 0.92483 0.85818 0.86293 0.83686 0.83503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.56 18.54 41.84 0.78 -4.78 16 2 C 0.26 2.98 14.96 -22.47 -0.34 2.64 16 3 C -0.06 -0.55 5.73 -106.87 -0.61 -1.16 16 4 C -0.05 -0.44 9.13 -38.83 -0.35 -0.79 16 5 C -0.02 -0.25 5.87 -104.95 -0.62 -0.86 16 6 C -0.09 -1.17 5.88 -104.90 -0.62 -1.79 16 7 C -0.10 -1.40 9.42 -39.25 -0.37 -1.77 16 8 C -0.12 -2.02 9.68 -39.63 -0.38 -2.40 16 9 C -0.01 -0.24 5.07 -104.56 -0.53 -0.77 16 10 C 0.01 0.23 4.17 -29.03 -0.12 0.11 16 11 C -0.52 -13.89 9.65 -34.44 -0.33 -14.22 16 12 H 0.07 2.20 7.98 -52.49 -0.42 1.78 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 15 Si 0.88 20.44 27.47 -169.99 -4.67 15.77 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 19 C -0.12 -1.99 9.68 -39.63 -0.38 -2.37 16 20 C -0.10 -1.33 9.43 -39.25 -0.37 -1.70 16 21 C -0.06 -0.50 9.42 -39.19 -0.37 -0.87 16 22 C -0.14 -1.07 10.00 -39.62 -0.40 -1.46 16 23 C 0.13 1.20 7.28 -38.90 -0.28 0.92 16 24 F -0.13 -1.34 16.80 2.25 0.04 -1.30 16 25 H 0.15 1.23 6.19 -52.48 -0.33 0.90 16 26 H 0.12 1.28 6.20 -52.49 -0.33 0.96 16 27 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 28 H 0.03 0.65 7.14 -51.93 -0.37 0.28 16 29 H 0.03 0.55 7.51 -51.93 -0.39 0.16 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.12 1.93 8.06 -52.48 -0.42 1.51 16 32 H 0.12 1.17 6.19 -52.49 -0.33 0.84 16 33 H 0.15 0.90 6.19 -52.49 -0.32 0.57 16 34 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 308.25 15.07 4.65 4.65 Total: -1.00 -30.39 308.25 -7.53 -37.91 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -2.92 Total: -1.76 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -6.17 Total: -24.65 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: 1.55 Total: -30.61 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.67 Total: 15.77 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.39 -7.53 -37.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235894305.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.576 kcal (2) G-P(sol) polarization free energy of solvation -30.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds