Wall clock time and date at job start Tue Mar 31 2020 05:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86792 * 120.00099 * 2 1 4 4 H 1.48498 * 109.47413 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47619 * 300.00460 * 3 2 1 6 6 H 1.48503 * 109.47026 * 60.00635 * 3 2 1 7 7 C 1.39932 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00401 * 162.70278 * 7 2 1 9 9 C 1.41321 * 119.99912 * 342.42314 * 7 2 1 10 10 C 1.40790 * 120.20637 * 334.86328 * 9 7 2 11 11 C 1.37611 * 120.01739 * 179.78314 * 10 9 7 12 12 C 1.38519 * 120.45120 * 0.47821 * 11 10 9 13 13 C 1.39541 * 120.42135 * 359.77360 * 12 11 10 14 14 C 1.48398 * 120.01759 * 179.97438 * 13 12 11 15 15 C 1.39881 * 119.94202 * 130.02797 * 14 13 12 16 16 C 1.36490 * 120.69578 * 179.97438 * 15 14 13 17 17 C 1.39214 * 120.20413 * 0.02562 * 16 15 14 18 18 N 1.37719 * 133.29102 * 180.02562 * 17 16 15 19 19 H 0.97000 * 125.04300 * 359.97086 * 18 17 16 20 20 C 1.36826 * 109.90823 * 179.97438 * 18 17 16 21 21 C 1.34229 * 109.94500 * 0.02562 * 20 18 17 22 22 C 1.40738 * 119.60833 * 0.02562 * 17 16 15 23 23 C 1.38768 * 119.94307 * 309.75273 * 14 13 12 24 24 C 1.39101 * 119.96687 * 359.97438 * 13 12 11 25 25 F 1.35099 * 120.22238 * 179.97438 * 24 13 12 26 26 H 0.97001 * 119.99946 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.99095 * 0.02605 * 10 9 7 28 28 H 1.08001 * 119.77981 * 180.21275 * 11 10 9 29 29 H 1.08000 * 119.79193 * 179.76371 * 12 11 10 30 30 H 1.08001 * 119.65449 * 359.97438 * 15 14 13 31 31 H 1.07997 * 119.89910 * 180.02562 * 16 15 14 32 32 H 1.08000 * 125.02385 * 179.97438 * 20 18 17 33 33 H 1.07997 * 126.50541 * 179.97438 * 21 20 18 34 34 H 1.07998 * 120.29524 * 359.97438 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.7025 1.3464 -0.0006 5 1 1.8837 2.3965 -1.2124 6 1 1.8838 2.3963 1.2126 7 6 2.0082 -1.2118 -0.0005 8 1 3.0515 -1.2329 -0.2786 9 6 1.3510 -2.4073 0.3685 10 6 0.2252 -2.3652 1.2128 11 6 -0.4144 -3.5313 1.5661 12 6 0.0474 -4.7529 1.1045 13 6 1.1647 -4.8167 0.2710 14 6 1.6521 -6.1303 -0.2179 15 6 1.9038 -6.3183 -1.5810 16 6 2.3529 -7.5199 -2.0474 17 6 2.5660 -8.5774 -1.1674 18 7 3.0033 -9.8724 -1.3355 19 1 3.2503 -10.2710 -2.1847 20 6 3.0376 -10.5132 -0.1271 21 6 2.6339 -9.6799 0.8447 22 6 2.3152 -8.4003 0.2061 23 6 1.8628 -7.1683 0.6786 24 6 1.8215 -3.6484 -0.1013 25 9 2.9040 -3.7042 -0.9076 26 1 -0.4850 0.8401 0.0004 27 1 -0.1390 -1.4170 1.5801 28 1 -1.2798 -3.4942 2.2112 29 1 -0.4605 -5.6618 1.3915 30 1 1.7411 -5.5041 -2.2717 31 1 2.5435 -7.6507 -3.1023 32 1 3.3434 -11.5382 0.0225 33 1 2.5581 -9.9093 1.8973 34 1 1.6741 -7.0249 1.7323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239696371.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:10 Heat of formation + Delta-G solvation = 7.950651 kcal Electronic energy + Delta-G solvation = -20329.820888 eV Core-core repulsion = 17105.939876 eV Total energy + Delta-G solvation = -3223.881012 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.17386 -42.03121 -39.41782 -37.73458 -35.58592 -33.00634 -32.21406 -31.42673 -29.64447 -28.81154 -27.23245 -24.28365 -23.25755 -22.49170 -21.90316 -21.25807 -19.12801 -18.86513 -17.91766 -17.26915 -17.03382 -16.42370 -16.24092 -15.88758 -15.30754 -15.22278 -15.00186 -14.64157 -14.58335 -13.96294 -13.74463 -13.59885 -13.43832 -13.36838 -13.01253 -12.68473 -12.61113 -12.41501 -12.12435 -11.81699 -11.63964 -11.37507 -11.10968 -10.68194 -9.64003 -9.33706 -8.84754 -8.70922 -8.46987 -6.42530 0.17524 0.38891 0.82576 1.09481 1.36821 1.47446 1.52407 1.89482 2.19274 2.31295 2.62165 2.96235 3.52762 3.79305 3.90983 4.01826 4.08538 4.29637 4.44170 4.51097 4.53233 4.73344 4.79872 4.86508 4.97658 5.08499 5.13036 5.21407 5.28870 5.38165 5.63474 5.67611 5.76003 5.83885 5.85715 6.02110 6.05084 6.16053 6.26105 6.55602 6.77323 6.79856 6.88118 8.26193 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.034710 B = 0.004068 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.496661 B = 6881.160946 C = 7339.696355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.040 3.960 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.262 1.262 6 H -0.256 1.256 7 C -0.497 4.497 8 H 0.067 0.933 9 C 0.057 3.943 10 C -0.165 4.165 11 C -0.106 4.106 12 C -0.198 4.198 13 C -0.053 4.053 14 C -0.075 4.075 15 C -0.101 4.101 16 C -0.124 4.124 17 C 0.077 3.923 18 N -0.586 5.586 19 H 0.431 0.569 20 C 0.072 3.928 21 C -0.233 4.233 22 C -0.129 4.129 23 C -0.072 4.072 24 C -0.046 4.046 25 F -0.166 7.166 26 H 0.293 0.707 27 H 0.115 0.885 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.109 0.891 31 H 0.144 0.856 32 H 0.218 0.782 33 H 0.160 0.840 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.088 -15.957 -0.680 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.175 4.175 3 Si 0.805 3.195 4 H -0.188 1.188 5 H -0.187 1.187 6 H -0.180 1.180 7 C -0.525 4.525 8 H 0.086 0.914 9 C 0.055 3.945 10 C -0.184 4.184 11 C -0.125 4.125 12 C -0.218 4.218 13 C -0.054 4.054 14 C -0.076 4.076 15 C -0.120 4.120 16 C -0.144 4.144 17 C -0.031 4.031 18 N -0.190 5.190 19 H 0.270 0.730 20 C -0.055 4.055 21 C -0.257 4.257 22 C -0.134 4.134 23 C -0.091 4.091 24 C -0.066 4.066 25 F -0.145 7.145 26 H 0.104 0.896 27 H 0.133 0.867 28 H 0.147 0.853 29 H 0.145 0.855 30 H 0.127 0.873 31 H 0.162 0.838 32 H 0.235 0.765 33 H 0.178 0.822 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.961 -15.904 -0.837 16.199 hybrid contribution 0.462 1.083 -0.625 1.333 sum 3.423 -14.821 -1.463 15.281 Atomic orbital electron populations 1.69842 1.08790 1.30967 1.34614 1.26702 0.95582 1.04289 0.90968 0.85129 0.79102 0.75894 0.79425 1.18818 1.18685 1.17996 1.19667 0.98002 0.92528 1.42352 0.91433 1.17929 0.93678 0.91355 0.91581 1.21211 0.98662 0.97996 1.00556 1.21003 0.99445 0.92163 0.99853 1.20648 0.98940 0.97617 1.04548 1.18623 0.96900 0.90257 0.99604 1.18611 1.02616 0.92577 0.93812 1.20636 0.99687 0.97077 0.94597 1.19792 1.04243 0.90849 0.99526 1.18362 1.02704 0.87162 0.94876 1.41826 1.58096 1.08537 1.10550 0.72980 1.22496 1.00665 0.99595 0.82719 1.21994 1.11823 0.91421 1.00490 1.19527 1.05117 0.95184 0.93602 1.20623 0.98671 0.90773 0.98999 1.18160 0.91421 0.94693 1.02322 1.91222 1.53841 1.97269 1.72211 0.89612 0.86710 0.85338 0.85483 0.87308 0.83784 0.76538 0.82206 0.85710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.55 10.98 21.83 0.24 -42.32 16 2 C 0.04 2.08 5.14 85.25 0.44 2.52 16 3 Si 0.98 39.01 29.59 68.60 2.03 41.04 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 6 H -0.26 -9.46 7.11 99.48 0.71 -8.76 16 7 C -0.50 -28.31 8.77 23.44 0.21 -28.10 16 8 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 9 C 0.06 3.27 5.57 -21.27 -0.12 3.15 16 10 C -0.16 -8.68 8.68 22.75 0.20 -8.48 16 11 C -0.11 -4.85 10.01 22.19 0.22 -4.63 16 12 C -0.20 -8.79 9.50 22.65 0.22 -8.57 16 13 C -0.05 -2.54 5.47 -20.05 -0.11 -2.65 16 14 C -0.07 -3.14 5.31 -20.05 -0.11 -3.25 16 15 C -0.10 -3.90 8.77 22.26 0.20 -3.70 16 16 C -0.12 -3.81 10.00 22.10 0.22 -3.59 16 17 C 0.08 2.18 7.27 39.06 0.28 2.47 16 18 N -0.59 -10.85 6.07 -187.47 -1.14 -11.99 16 19 H 0.43 4.78 8.96 -92.71 -0.83 3.95 16 20 C 0.07 1.14 11.81 83.00 0.98 2.12 16 21 C -0.23 -5.32 11.08 23.51 0.26 -5.06 16 22 C -0.13 -4.08 6.37 -20.21 -0.13 -4.21 16 23 C -0.07 -2.65 9.55 22.70 0.22 -2.43 16 24 C -0.05 -2.50 7.15 23.10 0.17 -2.33 16 25 F -0.17 -9.10 15.31 44.97 0.69 -8.41 16 26 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 27 H 0.12 6.17 6.19 -2.91 -0.02 6.15 16 28 H 0.13 4.92 8.06 -2.91 -0.02 4.89 16 29 H 0.13 4.84 8.03 -2.91 -0.02 4.82 16 30 H 0.11 4.45 7.75 -2.91 -0.02 4.43 16 31 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 32 H 0.22 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.12 4.33 8.04 -2.91 -0.02 4.31 16 Total: -1.00 -68.71 300.95 5.28 -63.43 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.32 Total: 24.99 kcal Atomic # 6 Polarization: -69.88 SS G_CDS: 3.14 Total: -66.74 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.90 Total: -54.30 kcal Atomic # 9 Polarization: -9.10 SS G_CDS: 0.69 Total: -8.41 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -68.71 5.28 -63.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239696371.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.380 kcal (2) G-P(sol) polarization free energy of solvation -68.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds