Wall clock time and date at job start Tue Mar 31 2020 05:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86803 * 119.99826 * 2 1 4 4 H 1.48497 * 109.47366 * 239.99804 * 3 2 1 5 5 H 1.48504 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47245 * 119.99963 * 3 2 1 7 7 C 1.39918 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00212 * 162.63335 * 7 2 1 9 9 C 1.41429 * 120.00082 * 342.63955 * 7 2 1 10 10 C 1.40809 * 120.18431 * 154.92805 * 9 7 2 11 11 C 1.37693 * 120.01144 * 179.97438 * 10 9 7 12 12 C 1.38414 * 120.38669 * 359.74071 * 11 10 9 13 13 C 1.39786 * 120.36711 * 0.51547 * 12 11 10 14 14 C 1.48203 * 120.00500 * 179.76113 * 13 12 11 15 15 C 1.38887 * 120.27787 * 129.70620 * 14 13 12 16 16 C 1.38698 * 120.20740 * 180.02562 * 15 14 13 17 17 F 1.35100 * 119.61627 * 180.02562 * 16 15 14 18 18 C 1.38087 * 120.76621 * 0.07074 * 16 15 14 19 19 C 1.39102 * 120.16177 * 359.89538 * 18 16 15 20 20 N 1.37748 * 133.33457 * 180.02562 * 19 18 16 21 21 H 0.97002 * 125.06984 * 0.02562 * 20 19 18 22 22 C 1.36845 * 109.84865 * 180.02562 * 20 19 18 23 23 C 1.34322 * 109.87921 * 0.24503 * 22 20 19 24 24 C 1.40568 * 119.53214 * 0.08609 * 19 18 16 25 25 C 1.38870 * 119.98249 * 359.48918 * 13 12 11 26 26 H 0.96999 * 120.00163 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.98865 * 0.02562 * 10 9 7 28 28 H 1.08003 * 119.80473 * 180.02562 * 11 10 9 29 29 H 1.08006 * 119.81135 * 180.25479 * 12 11 10 30 30 H 1.07995 * 119.89293 * 0.02562 * 15 14 13 31 31 H 1.08000 * 119.92145 * 180.02562 * 18 16 15 32 32 H 1.07998 * 125.05835 * 179.97438 * 22 20 19 33 33 H 1.08009 * 126.49394 * 179.75450 * 23 22 20 34 34 H 1.07996 * 120.19479 * 180.27460 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6965 -1.2124 5 1 1.2772 2.7465 0.0006 6 1 3.0961 1.6965 1.2125 7 6 2.0080 -1.2117 0.0005 8 1 3.0511 -1.2331 -0.2786 9 6 1.3492 -2.4085 0.3665 10 6 1.8193 -3.6486 -0.1067 11 6 1.1755 -4.8116 0.2523 12 6 0.0687 -4.7716 1.0824 13 6 -0.4148 -3.5490 1.5572 14 6 -1.6037 -3.5151 2.4413 15 6 -1.5688 -2.8058 3.6349 16 6 -2.6821 -2.7755 4.4615 17 9 -2.6352 -2.0813 5.6195 18 6 -3.8377 -3.4474 4.1149 19 6 -3.8989 -4.1646 2.9246 20 7 -4.8847 -4.9153 2.3229 21 1 -5.7718 -5.0642 2.6861 22 6 -4.4258 -5.4196 1.1365 23 6 -3.1567 -5.0285 0.9343 24 6 -2.7763 -4.2015 2.0794 25 6 0.2227 -2.3666 1.2047 26 1 -0.4850 0.8400 -0.0004 27 1 2.6854 -3.6874 -0.7508 28 1 1.5392 -5.7610 -0.1124 29 1 -0.4267 -5.6899 1.3614 30 1 -0.6719 -2.2762 3.9202 31 1 -4.6967 -3.4143 4.7686 32 1 -4.9972 -6.0431 0.4649 33 1 -2.5356 -5.2761 0.0861 34 1 -0.1453 -1.4205 1.5732 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240032657.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:00 Heat of formation + Delta-G solvation = 23.531282 kcal Electronic energy + Delta-G solvation = -20535.229736 eV Core-core repulsion = 17312.024350 eV Total energy + Delta-G solvation = -3223.205386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.54633 -40.90671 -37.73053 -36.04769 -33.70672 -32.09434 -29.92218 -29.59724 -28.65662 -27.39404 -25.24779 -23.06025 -21.66720 -20.76091 -20.58434 -19.84206 -17.97273 -17.01416 -16.50567 -15.77449 -15.31073 -15.26720 -14.86793 -14.67834 -14.03480 -13.81671 -13.58173 -13.30905 -13.07020 -12.63782 -12.38115 -12.29068 -11.64391 -11.55685 -11.25443 -11.06275 -10.88547 -10.77416 -10.58496 -10.43051 -9.66479 -9.51010 -9.36812 -9.12460 -7.91400 -7.73458 -7.40485 -7.01198 -6.73269 -4.35393 1.23349 1.80784 2.78228 2.92304 3.00009 3.08918 3.11068 3.23142 3.24157 3.94926 4.14744 4.60334 4.71874 4.99632 5.05668 5.41763 5.51906 5.55642 5.71301 5.71887 6.05732 6.21481 6.26310 6.41218 6.50918 6.52626 6.78060 6.84704 6.97749 7.02908 7.06884 7.22614 7.34578 7.41287 7.55595 7.68950 7.85668 8.02473 8.04133 8.26345 8.59580 8.88940 8.93846 10.20629 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016400 B = 0.005647 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.895415 B = 4956.978325 C = 5836.957840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.078 0.922 9 C 0.106 3.894 10 C -0.218 4.218 11 C -0.098 4.098 12 C -0.214 4.214 13 C -0.053 4.053 14 C 0.076 3.924 15 C -0.183 4.183 16 C 0.127 3.873 17 F -0.144 7.144 18 C -0.193 4.193 19 C 0.120 3.880 20 N -0.599 5.599 21 H 0.412 0.588 22 C 0.027 3.973 23 C -0.171 4.171 24 C -0.110 4.110 25 C -0.134 4.134 26 H 0.281 0.719 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.136 0.864 31 H 0.124 0.876 32 H 0.168 0.832 33 H 0.150 0.850 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.724 -6.240 4.067 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.494 4.494 8 H 0.096 0.904 9 C 0.104 3.896 10 C -0.238 4.238 11 C -0.116 4.116 12 C -0.234 4.234 13 C -0.053 4.053 14 C 0.075 3.925 15 C -0.203 4.203 16 C 0.107 3.893 17 F -0.122 7.122 18 C -0.215 4.215 19 C 0.013 3.987 20 N -0.203 5.203 21 H 0.248 0.752 22 C -0.097 4.097 23 C -0.196 4.196 24 C -0.115 4.115 25 C -0.153 4.153 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.154 0.846 31 H 0.142 0.858 32 H 0.185 0.815 33 H 0.167 0.833 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.050 -6.088 4.094 11.650 hybrid contribution -0.179 0.864 0.262 0.921 sum -9.229 -5.224 4.357 11.465 Atomic orbital electron populations 1.69806 1.07489 1.29376 1.35128 1.25885 0.94714 1.01232 0.92306 0.86399 0.80171 0.80388 0.79964 1.19041 1.20358 1.18808 1.19517 0.97955 0.91123 1.40838 0.90427 1.17529 0.91081 0.92182 0.88831 1.21061 1.03563 0.92931 1.06247 1.20452 0.96246 0.96541 0.98392 1.20345 1.01172 0.95098 1.06748 1.18383 0.93882 0.94558 0.98505 1.18341 0.91909 0.90590 0.91611 1.20972 0.98536 1.05232 0.95511 1.17033 0.94548 0.94733 0.83029 1.91455 1.96989 1.77182 1.46621 1.19519 0.98687 1.05543 0.97785 1.17689 0.89425 0.96968 0.94660 1.41655 1.13831 1.45490 1.19319 0.75222 1.21754 0.96123 1.02749 0.89067 1.21804 0.95272 1.02803 0.99747 1.19180 0.93111 1.02915 0.96306 1.21454 0.98062 0.95787 1.00012 0.90767 0.88971 0.89202 0.89060 0.84598 0.85769 0.81477 0.83269 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.55 10.97 55.55 0.61 -19.94 16 2 C 0.08 1.91 5.14 -17.35 -0.09 1.82 16 3 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.46 -12.21 9.05 -37.74 -0.34 -12.56 16 8 H 0.08 1.96 7.90 -52.48 -0.41 1.54 16 9 C 0.11 2.79 5.57 -106.87 -0.59 2.20 16 10 C -0.22 -5.28 9.79 -38.81 -0.38 -5.66 16 11 C -0.10 -2.16 10.01 -39.72 -0.40 -2.56 16 12 C -0.21 -4.71 8.88 -38.94 -0.35 -5.05 16 13 C -0.05 -1.23 5.42 -104.99 -0.57 -1.80 16 14 C 0.08 1.59 5.48 -104.67 -0.57 1.01 16 15 C -0.18 -3.57 9.46 -39.17 -0.37 -3.94 16 16 C 0.13 2.22 7.27 -39.47 -0.29 1.94 16 17 F -0.14 -2.44 17.25 2.25 0.04 -2.40 16 18 C -0.19 -3.02 10.03 -39.32 -0.39 -3.42 16 19 C 0.12 1.93 7.27 -84.01 -0.61 1.32 16 20 N -0.60 -7.35 6.07 -10.65 -0.06 -7.42 16 21 H 0.41 3.47 8.96 -40.82 -0.37 3.11 16 22 C 0.03 0.34 11.82 -16.70 -0.20 0.14 16 23 C -0.17 -2.79 10.28 -37.73 -0.39 -3.18 16 24 C -0.11 -2.07 6.02 -104.89 -0.63 -2.70 16 25 C -0.13 -3.44 8.14 -38.50 -0.31 -3.75 16 26 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 27 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 28 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 29 H 0.09 1.83 7.85 -52.48 -0.41 1.42 16 30 H 0.14 2.64 8.03 -52.49 -0.42 2.22 16 31 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 32 H 0.17 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.15 2.43 7.84 -52.48 -0.41 2.02 16 34 H 0.12 3.27 6.16 -52.49 -0.32 2.95 16 LS Contribution 302.12 15.07 4.55 4.55 Total: -1.00 -28.67 302.12 -9.55 -38.23 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -3.17 Total: 9.47 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: -6.48 Total: -36.17 kcal Atomic # 7 Polarization: -27.90 SS G_CDS: 0.54 Total: -27.36 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.67 -9.55 -38.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240032657.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.758 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds