Wall clock time and date at job start Tue Mar 31 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86800 * 119.99998 * 2 1 4 4 H 1.48495 * 109.47226 * 275.39303 * 3 2 1 5 5 H 1.48504 * 109.46846 * 35.39632 * 3 2 1 6 6 H 1.48498 * 109.47096 * 155.39277 * 3 2 1 7 7 C 1.40020 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99946 * 341.97182 * 7 2 1 9 9 C 1.40738 * 120.00222 * 161.95885 * 7 2 1 10 10 C 1.40785 * 120.34613 * 329.87630 * 9 7 2 11 11 C 1.36357 * 119.99997 * 179.97438 * 10 9 7 12 12 C 1.39048 * 120.73946 * 359.97438 * 11 10 9 13 13 C 1.37888 * 120.70886 * 0.02562 * 12 11 10 14 14 C 1.39456 * 119.96894 * 0.02562 * 13 12 11 15 15 C 1.47379 * 120.36564 * 179.97438 * 14 13 12 16 16 C 1.41076 * 120.35721 * 269.75312 * 15 14 13 17 17 C 1.46041 * 133.98178 * 359.97438 * 16 15 14 18 18 C 1.34569 * 107.00346 * 180.02562 * 17 16 15 19 19 N 1.36617 * 109.84809 * 359.45537 * 18 17 16 20 20 H 0.97001 * 125.07909 * 179.97438 * 19 18 17 21 21 C 1.37845 * 109.84132 * 0.65411 * 19 18 17 22 22 C 1.39155 * 133.29463 * 179.27401 * 21 19 18 23 23 C 1.38005 * 120.31493 * 179.97438 * 22 21 19 24 24 C 1.38544 * 120.85058 * 0.02562 * 23 22 21 25 25 F 1.35099 * 119.93700 * 180.02562 * 24 23 22 26 26 H 0.97000 * 119.99881 * 0.02562 * 1 2 3 27 27 H 1.07992 * 120.00253 * 359.97271 * 10 9 7 28 28 H 1.07996 * 119.62856 * 179.97438 * 11 10 9 29 29 H 1.07995 * 119.64043 * 179.71862 * 12 11 10 30 30 H 1.08006 * 120.01323 * 179.97438 * 13 12 11 31 31 H 1.08007 * 126.49887 * 0.02562 * 17 16 15 32 32 H 1.08001 * 125.07758 * 180.02562 * 18 17 16 33 33 H 1.07991 * 119.84233 * 0.02562 * 22 21 19 34 34 H 1.07997 * 119.57578 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3757 2.1122 -1.3938 5 1 1.5012 2.6170 0.8110 6 1 3.5920 1.4100 0.5830 7 6 2.0083 -1.2126 0.0005 8 1 1.5081 -2.1248 0.2904 9 6 3.3638 -1.2427 -0.3769 10 6 3.8629 -0.3147 -1.3106 11 6 5.1776 -0.3499 -1.6709 12 6 6.0389 -1.2954 -1.1253 13 6 5.5819 -2.2183 -0.2084 14 6 4.2426 -2.2097 0.1803 15 6 3.7447 -3.1924 1.1592 16 6 3.2310 -4.4329 0.7261 17 6 3.0487 -5.0536 -0.5833 18 6 2.5029 -6.2653 -0.3718 19 7 2.3343 -6.4706 0.9683 20 1 1.9583 -7.2711 1.3667 21 6 2.7644 -5.3641 1.6689 22 6 2.8034 -5.0482 3.0236 23 6 3.3026 -3.8312 3.4409 24 6 3.7720 -2.9039 2.5248 25 9 4.2572 -1.7184 2.9539 26 1 -0.4850 0.8401 -0.0004 27 1 3.2046 0.4250 -1.7415 28 1 5.5540 0.3645 -2.3879 29 1 7.0758 -1.3101 -1.4267 30 1 6.2607 -2.9479 0.2079 31 1 3.3036 -4.6219 -1.5400 32 1 2.2458 -6.9737 -1.1453 33 1 2.4421 -5.7592 3.7518 34 1 3.3277 -3.5986 4.4953 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240213447.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:43 Heat of formation + Delta-G solvation = 12.914406 kcal Electronic energy + Delta-G solvation = -21296.964143 eV Core-core repulsion = 18073.298375 eV Total energy + Delta-G solvation = -3223.665768 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.55662 -42.01200 -39.63848 -37.30179 -35.53216 -33.72549 -32.25974 -31.26545 -29.75564 -29.11455 -26.95137 -24.28519 -23.10714 -22.72179 -22.04676 -21.14030 -19.32005 -18.92173 -18.07268 -17.65109 -16.96727 -16.45345 -16.03949 -16.02825 -15.66760 -15.45655 -15.08028 -14.62127 -14.42542 -14.16359 -13.97547 -13.78509 -13.57306 -13.39123 -13.27555 -12.70054 -12.58887 -12.22483 -12.13142 -11.90851 -11.62295 -11.32589 -11.03895 -10.43339 -9.48201 -9.37048 -9.03425 -8.90869 -8.44378 -6.45527 0.12536 0.55447 0.73451 0.87083 1.21963 1.36758 1.45986 1.86499 2.10492 2.30474 2.61645 2.82600 3.45776 3.57741 3.84478 4.04098 4.24454 4.32030 4.36065 4.39891 4.46779 4.69437 4.74475 4.83316 4.94186 5.07828 5.14066 5.16532 5.32474 5.34622 5.47966 5.58987 5.75558 5.83484 5.86529 5.93528 6.02002 6.22842 6.27611 6.43043 6.78118 6.83561 6.85113 8.17372 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.007491 C = 0.007021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.054712 B = 3736.780855 C = 3987.068506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.051 3.949 3 Si 0.956 3.044 4 H -0.253 1.253 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.460 4.460 8 H 0.053 0.947 9 C 0.091 3.909 10 C -0.250 4.250 11 C -0.081 4.081 12 C -0.229 4.229 13 C -0.070 4.070 14 C -0.168 4.168 15 C -0.005 4.005 16 C -0.103 4.103 17 C -0.235 4.235 18 C 0.079 3.921 19 N -0.577 5.577 20 H 0.435 0.565 21 C 0.072 3.928 22 C -0.103 4.103 23 C -0.137 4.137 24 C 0.038 3.962 25 F -0.157 7.157 26 H 0.293 0.707 27 H 0.097 0.903 28 H 0.128 0.872 29 H 0.131 0.869 30 H 0.113 0.887 31 H 0.129 0.871 32 H 0.218 0.782 33 H 0.169 0.831 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.748 -11.429 2.444 12.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.164 4.164 3 Si 0.780 3.220 4 H -0.178 1.178 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.489 4.489 8 H 0.071 0.929 9 C 0.088 3.912 10 C -0.269 4.269 11 C -0.099 4.099 12 C -0.248 4.248 13 C -0.088 4.088 14 C -0.169 4.169 15 C -0.006 4.006 16 C -0.108 4.108 17 C -0.260 4.260 18 C -0.048 4.048 19 N -0.182 5.182 20 H 0.276 0.724 21 C -0.036 4.036 22 C -0.123 4.123 23 C -0.157 4.157 24 C 0.018 3.982 25 F -0.136 7.136 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.131 0.869 31 H 0.147 0.853 32 H 0.235 0.765 33 H 0.186 0.814 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.418 -11.438 2.503 12.514 hybrid contribution -0.232 0.987 0.113 1.020 sum 4.186 -10.450 2.616 11.558 Atomic orbital electron populations 1.69714 1.08950 1.31224 1.37180 1.26756 0.95291 1.03825 0.90532 0.85633 0.79598 0.77178 0.79606 1.17797 1.20344 1.18464 1.19179 0.94165 0.95162 1.40409 0.92881 1.17802 0.92240 0.91236 0.89893 1.20894 0.97221 1.04631 1.04146 1.20783 0.92867 0.97857 0.98391 1.20735 0.99883 1.00078 1.04111 1.20971 0.93539 0.97752 0.96572 1.18722 0.93734 1.01598 1.02880 1.18255 0.98243 0.93088 0.91045 1.19352 1.02957 0.93367 0.95132 1.21750 1.11479 0.96916 0.95892 1.22390 0.99406 0.97681 0.85367 1.41620 1.55466 1.15796 1.05364 0.72427 1.18377 1.02614 0.89086 0.93476 1.20115 1.02913 0.97280 0.92006 1.20896 1.01608 0.93313 0.99894 1.17979 1.04663 0.83059 0.92463 1.91375 1.86364 1.45711 1.90191 0.89701 0.88474 0.85432 0.85070 0.86945 0.85301 0.76526 0.81396 0.82354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.09 13.93 21.84 0.30 -47.79 16 2 C 0.05 2.86 5.40 85.28 0.46 3.32 16 3 Si 0.96 45.61 24.52 68.60 1.68 47.29 16 4 H -0.25 -11.19 6.71 99.48 0.67 -10.52 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.26 -13.08 6.86 99.48 0.68 -12.40 16 7 C -0.46 -27.14 8.94 23.31 0.21 -26.94 16 8 H 0.05 3.44 7.55 -2.91 -0.02 3.42 16 9 C 0.09 4.94 5.12 -21.10 -0.11 4.83 16 10 C -0.25 -12.49 7.11 22.45 0.16 -12.33 16 11 C -0.08 -3.48 9.96 22.03 0.22 -3.26 16 12 C -0.23 -9.36 10.02 22.38 0.22 -9.14 16 13 C -0.07 -3.11 9.78 22.48 0.22 -2.89 16 14 C -0.17 -8.40 4.91 -19.63 -0.10 -8.49 16 15 C 0.00 -0.22 4.14 -19.85 -0.08 -0.31 16 16 C -0.10 -4.24 6.19 -20.01 -0.12 -4.37 16 17 C -0.24 -8.50 10.95 23.45 0.26 -8.24 16 18 C 0.08 1.94 11.83 83.11 0.98 2.92 16 19 N -0.58 -13.40 6.07 -187.53 -1.14 -14.54 16 20 H 0.43 6.00 8.96 -92.71 -0.83 5.17 16 21 C 0.07 2.33 7.27 38.97 0.28 2.61 16 22 C -0.10 -2.97 10.06 22.43 0.23 -2.74 16 23 C -0.14 -4.68 9.97 22.29 0.22 -4.46 16 24 C 0.04 1.70 7.28 22.67 0.17 1.86 16 25 F -0.16 -7.51 16.82 44.97 0.76 -6.75 16 26 H 0.29 14.98 8.30 -92.71 -0.77 14.21 16 27 H 0.10 4.82 4.76 -2.91 -0.01 4.80 16 28 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 29 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 30 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 31 H 0.13 4.90 8.06 -2.91 -0.02 4.87 16 32 H 0.22 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.17 3.17 8.06 -2.92 -0.02 3.15 16 34 H 0.16 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -72.89 296.93 5.08 -67.81 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.26 Total: 21.58 kcal Atomic # 6 Polarization: -70.83 SS G_CDS: 3.22 Total: -67.61 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: -0.83 Total: -62.33 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 0.76 Total: -6.75 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.68 Total: 47.29 kcal Total: -72.89 5.08 -67.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240213447.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.725 kcal (2) G-P(sol) polarization free energy of solvation -72.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds