Wall clock time and date at job start Tue Mar 31 2020 05:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86801 * 119.99937 * 2 1 4 4 H 1.48500 * 109.46714 * 239.99850 * 3 2 1 5 5 H 1.48496 * 109.47013 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46887 * 120.00157 * 3 2 1 7 7 C 1.38638 * 119.99533 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99474 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00317 * 359.97438 * 7 2 1 10 10 C 1.35676 * 117.00098 * 185.06330 * 9 7 2 11 11 C 1.38749 * 120.13186 * 354.40705 * 10 9 7 12 12 C 1.38118 * 120.04853 * 179.97438 * 11 10 9 13 13 C 1.38437 * 120.32168 * 359.97438 * 12 11 10 14 14 C 1.38026 * 120.26605 * 0.02562 * 13 12 11 15 15 C 1.39268 * 119.94622 * 359.97438 * 14 13 12 16 16 C 1.48323 * 120.15746 * 180.02562 * 15 14 13 17 17 C 1.41270 * 120.40875 * 129.72710 * 16 15 14 18 18 N 1.31034 * 120.13221 * 179.73554 * 17 16 15 19 19 C 1.34053 * 121.00351 * 0.51351 * 18 17 16 20 20 C 1.38869 * 132.37236 * 179.76915 * 19 18 17 21 21 C 1.38690 * 107.65830 * 180.02562 * 20 19 18 22 22 N 1.31401 * 108.98682 * 359.97438 * 21 20 19 23 23 N 1.37150 * 120.75766 * 359.76476 * 19 18 17 24 24 C 1.36407 * 119.91623 * 359.97244 * 23 19 18 25 25 H 0.96998 * 119.99469 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.97526 * 359.97438 * 11 10 9 27 27 H 1.08000 * 119.84392 * 180.27356 * 12 11 10 28 28 H 1.08001 * 119.86941 * 180.02562 * 13 12 11 29 29 H 1.08006 * 120.02255 * 180.02562 * 14 13 12 30 30 H 1.07999 * 119.92921 * 359.97438 * 17 16 15 31 31 H 1.08006 * 126.17348 * 359.97438 * 20 19 18 32 32 H 1.08005 * 125.50911 * 180.02562 * 21 20 19 33 33 H 1.08003 * 120.49239 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1035 1.6963 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3682 -0.0005 10 6 2.0696 -3.5038 0.1056 11 6 3.4556 -3.4404 0.0912 12 6 4.2020 -4.5974 0.1999 13 6 3.5742 -5.8250 0.3242 14 6 2.1963 -5.9033 0.3400 15 6 1.4328 -4.7436 0.2312 16 6 -0.0483 -4.8222 0.2482 17 6 -0.7984 -3.9949 1.1134 18 7 -2.1068 -4.0651 1.1202 19 6 -2.7564 -4.9232 0.3211 20 6 -4.1062 -5.1948 0.1399 21 6 -4.2102 -6.1868 -0.8237 22 7 -3.0044 -6.5202 -1.2259 23 7 -2.0667 -5.7485 -0.5300 24 6 -0.7041 -5.7001 -0.5689 25 1 -0.4849 0.8401 0.0004 26 1 3.9511 -2.4856 -0.0051 27 1 5.2806 -4.5438 0.1928 28 1 4.1650 -6.7251 0.4091 29 1 1.7106 -6.8630 0.4376 30 1 -0.2924 -3.3003 1.7676 31 1 -4.9270 -4.7197 0.6568 32 1 -5.1330 -6.6154 -1.1858 33 1 -0.1516 -6.3460 -1.2353 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240435090.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:54 Heat of formation + Delta-G solvation = 119.504391 kcal Electronic energy + Delta-G solvation = -20748.806886 eV Core-core repulsion = 17549.683168 eV Total energy + Delta-G solvation = -3199.123718 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.86949 -39.40668 -37.55546 -36.52990 -33.75059 -32.51742 -31.94050 -29.53294 -29.00596 -27.94545 -25.54719 -24.46148 -23.26577 -21.66714 -21.29201 -20.82624 -18.17559 -17.79354 -17.43904 -16.56567 -15.73984 -15.60714 -14.84650 -14.65963 -14.54014 -13.99021 -13.84186 -13.73803 -13.23187 -12.90598 -12.77436 -12.54947 -12.13671 -11.83375 -11.53972 -11.15140 -11.05343 -10.97449 -10.84708 -10.77647 -10.56522 -9.63531 -9.46438 -9.20018 -8.98171 -8.28006 -7.64927 -7.27364 -6.59966 -4.20040 0.93465 1.16293 1.96242 2.16373 2.43854 2.91816 3.05282 3.06147 3.09877 3.81917 3.87370 4.31332 4.33764 4.46880 4.79523 4.91457 4.98417 5.10297 5.38686 5.46876 5.61446 5.67553 5.71830 5.85691 5.91980 6.09689 6.16494 6.44364 6.49553 6.55938 6.70571 6.83761 6.87881 7.00588 7.15197 7.20154 7.56393 7.73276 7.81810 8.08685 8.83769 9.46379 10.55580 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.006286 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.723596 B = 4453.074571 C = 6089.795837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.044 3.956 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.398 4.398 8 H 0.094 0.906 9 O -0.164 6.164 10 C 0.168 3.832 11 C -0.229 4.229 12 C -0.062 4.062 13 C -0.214 4.214 14 C -0.055 4.055 15 C -0.135 4.135 16 C -0.094 4.094 17 C 0.228 3.772 18 N -0.469 5.469 19 C 0.262 3.738 20 C -0.283 4.283 21 C 0.081 3.919 22 N -0.331 5.331 23 N -0.305 5.305 24 C 0.139 3.861 25 H 0.274 0.726 26 H 0.132 0.868 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.182 0.818 31 H 0.156 0.844 32 H 0.192 0.808 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.900 -8.531 0.874 8.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.474 4.474 8 H 0.112 0.888 9 O -0.066 6.066 10 C 0.112 3.888 11 C -0.248 4.248 12 C -0.080 4.080 13 C -0.233 4.233 14 C -0.073 4.073 15 C -0.138 4.138 16 C -0.100 4.100 17 C 0.044 3.956 18 N -0.179 5.179 19 C 0.034 3.966 20 C -0.314 4.314 21 C -0.096 4.096 22 N -0.156 5.156 23 N -0.074 5.074 24 C 0.005 3.995 25 H 0.084 0.916 26 H 0.150 0.850 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.132 0.868 30 H 0.199 0.801 31 H 0.174 0.826 32 H 0.208 0.792 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.291 -8.649 0.490 8.668 hybrid contribution 0.628 0.955 -0.122 1.150 sum 0.919 -7.694 0.368 7.757 Atomic orbital electron populations 1.70028 1.05893 1.28274 1.44064 1.25314 0.95861 0.98902 0.96133 0.85772 0.78766 0.79629 0.79277 1.19459 1.20188 1.19329 1.21303 0.91906 0.80466 1.53702 0.88822 1.83942 1.34402 1.11454 1.76838 1.19230 0.90181 0.87137 0.92224 1.21129 0.93289 0.99332 1.11062 1.20885 0.98779 0.92293 0.96074 1.20531 0.93973 0.97221 1.11539 1.20715 0.93665 0.95657 0.97258 1.17263 0.88486 0.91808 1.16278 1.19101 0.94851 0.97667 0.98391 1.23671 0.87867 0.91768 0.92342 1.68258 1.10164 1.18078 1.21398 1.20908 0.93905 0.90912 0.90909 1.20842 0.92726 1.08256 1.09564 1.23670 0.96048 0.95240 0.94640 1.77774 0.97129 1.19405 1.21263 1.47024 1.05755 1.26997 1.27659 1.21969 0.79383 0.99517 0.98671 0.91609 0.85049 0.87142 0.87161 0.86785 0.80114 0.82611 0.79150 0.80921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.43 13.67 55.48 0.76 -22.67 16 2 C 0.04 1.13 5.49 -17.51 -0.10 1.04 16 3 Si 0.94 19.30 29.55 -169.99 -5.02 14.28 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.40 -10.11 9.49 30.88 0.29 -9.82 16 8 H 0.09 2.18 5.21 -52.48 -0.27 1.91 16 9 O -0.16 -4.15 8.17 0.33 0.00 -4.15 16 10 C 0.17 3.58 6.57 -38.75 -0.25 3.33 16 11 C -0.23 -4.39 9.16 -39.44 -0.36 -4.75 16 12 C -0.06 -0.99 10.03 -39.55 -0.40 -1.39 16 13 C -0.21 -3.20 10.03 -39.59 -0.40 -3.60 16 14 C -0.05 -0.86 9.50 -39.28 -0.37 -1.23 16 15 C -0.14 -2.52 5.50 -104.72 -0.58 -3.09 16 16 C -0.09 -1.76 5.24 -105.16 -0.55 -2.31 16 17 C 0.23 4.59 10.06 -16.74 -0.17 4.42 16 18 N -0.47 -9.72 10.47 -11.97 -0.13 -9.85 16 19 C 0.26 5.15 7.91 -155.46 -1.23 3.92 16 20 C -0.28 -4.70 10.91 -39.18 -0.43 -5.13 16 21 C 0.08 1.20 11.94 -17.57 -0.21 0.99 16 22 N -0.33 -5.79 12.66 30.48 0.39 -5.40 16 23 N -0.30 -5.73 3.89 -11.94 -0.05 -5.78 16 24 C 0.14 2.42 10.76 -16.08 -0.17 2.25 16 25 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.13 2.51 5.64 -52.49 -0.30 2.22 16 27 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 29 H 0.11 1.49 8.04 -52.48 -0.42 1.07 16 30 H 0.18 3.68 7.75 -52.49 -0.41 3.27 16 31 H 0.16 2.23 8.06 -52.48 -0.42 1.81 16 32 H 0.19 1.88 8.06 -52.48 -0.42 1.46 16 33 H 0.17 2.51 8.04 -52.48 -0.42 2.09 16 LS Contribution 297.56 15.07 4.48 4.48 Total: -1.00 -29.95 297.56 -7.13 -37.09 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -2.65 Total: 7.37 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -4.92 Total: -15.37 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.97 Total: -43.70 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: 0.00 Total: -4.15 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.95 -7.13 -37.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240435090.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.591 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds