Wall clock time and date at job start Tue Mar 31 2020 05:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86801 * 119.99937 * 2 1 4 4 H 1.48500 * 109.46714 * 239.99850 * 3 2 1 5 5 H 1.48496 * 109.47013 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46887 * 120.00157 * 3 2 1 7 7 C 1.38638 * 119.99533 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99474 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00317 * 359.97438 * 7 2 1 10 10 C 1.35676 * 117.00098 * 185.06330 * 9 7 2 11 11 C 1.38749 * 120.13186 * 354.40705 * 10 9 7 12 12 C 1.38118 * 120.04853 * 179.97438 * 11 10 9 13 13 C 1.38437 * 120.32168 * 359.97438 * 12 11 10 14 14 C 1.38026 * 120.26605 * 0.02562 * 13 12 11 15 15 C 1.39268 * 119.94622 * 359.97438 * 14 13 12 16 16 C 1.48323 * 120.15746 * 180.02562 * 15 14 13 17 17 C 1.41270 * 120.40875 * 129.72710 * 16 15 14 18 18 N 1.31034 * 120.13221 * 179.73554 * 17 16 15 19 19 C 1.34053 * 121.00351 * 0.51351 * 18 17 16 20 20 C 1.38869 * 132.37236 * 179.76915 * 19 18 17 21 21 C 1.38690 * 107.65830 * 180.02562 * 20 19 18 22 22 N 1.31401 * 108.98682 * 359.97438 * 21 20 19 23 23 N 1.37150 * 120.75766 * 359.76476 * 19 18 17 24 24 C 1.36407 * 119.91623 * 359.97244 * 23 19 18 25 25 H 0.96998 * 119.99469 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.97526 * 359.97438 * 11 10 9 27 27 H 1.08000 * 119.84392 * 180.27356 * 12 11 10 28 28 H 1.08001 * 119.86941 * 180.02562 * 13 12 11 29 29 H 1.08006 * 120.02255 * 180.02562 * 14 13 12 30 30 H 1.07999 * 119.92921 * 359.97438 * 17 16 15 31 31 H 1.08006 * 126.17348 * 359.97438 * 20 19 18 32 32 H 1.08005 * 125.50911 * 180.02562 * 21 20 19 33 33 H 1.08003 * 120.49239 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1035 1.6963 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3682 -0.0005 10 6 2.0696 -3.5038 0.1056 11 6 3.4556 -3.4404 0.0912 12 6 4.2020 -4.5974 0.1999 13 6 3.5742 -5.8250 0.3242 14 6 2.1963 -5.9033 0.3400 15 6 1.4328 -4.7436 0.2312 16 6 -0.0483 -4.8222 0.2482 17 6 -0.7984 -3.9949 1.1134 18 7 -2.1068 -4.0651 1.1202 19 6 -2.7564 -4.9232 0.3211 20 6 -4.1062 -5.1948 0.1399 21 6 -4.2102 -6.1868 -0.8237 22 7 -3.0044 -6.5202 -1.2259 23 7 -2.0667 -5.7485 -0.5300 24 6 -0.7041 -5.7001 -0.5689 25 1 -0.4849 0.8401 0.0004 26 1 3.9511 -2.4856 -0.0051 27 1 5.2806 -4.5438 0.1928 28 1 4.1650 -6.7251 0.4091 29 1 1.7106 -6.8630 0.4376 30 1 -0.2924 -3.3003 1.7676 31 1 -4.9270 -4.7197 0.6568 32 1 -5.1330 -6.6154 -1.1858 33 1 -0.1516 -6.3460 -1.2353 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240435090.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:54 Heat of formation + Delta-G solvation = 102.141337 kcal Electronic energy + Delta-G solvation = -20749.559804 eV Core-core repulsion = 17549.683168 eV Total energy + Delta-G solvation = -3199.876636 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.24819 -40.90900 -39.00891 -38.02804 -35.17969 -34.29910 -33.35273 -30.93023 -30.42853 -29.35080 -27.32818 -25.89256 -24.67437 -23.16466 -22.66594 -22.15893 -19.83000 -19.22334 -18.97751 -18.05003 -17.16690 -17.03063 -16.37010 -16.16134 -16.02346 -15.46889 -15.32956 -15.06170 -14.66992 -14.39167 -14.17320 -13.96908 -13.59831 -13.53614 -13.04891 -12.56515 -12.52401 -12.40812 -12.25571 -12.18637 -12.08598 -11.25329 -10.93888 -10.78587 -10.58668 -9.66041 -9.09935 -8.71506 -8.44693 -6.11995 -0.47650 -0.28244 0.57769 0.75603 1.08692 1.36816 1.46273 1.51537 1.66499 2.17106 2.39089 2.85097 2.89569 3.12768 3.20857 3.41598 3.45172 3.73791 4.08006 4.23359 4.26960 4.32928 4.41374 4.50939 4.63705 4.71491 4.91057 5.00840 5.07192 5.14949 5.18742 5.35759 5.58089 5.62950 5.68751 5.77636 6.00938 6.20536 6.40937 6.61631 6.99852 7.76598 8.75362 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.006286 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.723596 B = 4453.074571 C = 6089.795837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.016 4.016 3 Si 1.011 2.989 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.411 4.411 8 H 0.104 0.896 9 O -0.213 6.213 10 C 0.133 3.867 11 C -0.244 4.244 12 C -0.059 4.059 13 C -0.188 4.188 14 C -0.052 4.052 15 C -0.134 4.134 16 C -0.110 4.110 17 C 0.215 3.785 18 N -0.495 5.495 19 C 0.226 3.774 20 C -0.283 4.283 21 C 0.100 3.900 22 N -0.342 5.342 23 N -0.318 5.318 24 C 0.152 3.848 25 H 0.270 0.730 26 H 0.123 0.877 27 H 0.146 0.854 28 H 0.155 0.845 29 H 0.149 0.851 30 H 0.162 0.838 31 H 0.176 0.824 32 H 0.245 0.755 33 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 -11.531 0.208 11.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.215 4.215 3 Si 0.831 3.169 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.487 4.487 8 H 0.122 0.878 9 O -0.118 6.118 10 C 0.081 3.919 11 C -0.263 4.263 12 C -0.077 4.077 13 C -0.206 4.206 14 C -0.070 4.070 15 C -0.137 4.137 16 C -0.117 4.117 17 C 0.031 3.969 18 N -0.206 5.206 19 C -0.002 4.002 20 C -0.314 4.314 21 C -0.077 4.077 22 N -0.167 5.167 23 N -0.088 5.088 24 C 0.018 3.982 25 H 0.079 0.921 26 H 0.140 0.860 27 H 0.164 0.836 28 H 0.172 0.828 29 H 0.167 0.833 30 H 0.179 0.821 31 H 0.193 0.807 32 H 0.260 0.740 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 1.513 -11.704 -0.166 11.803 hybrid contribution 0.274 1.463 0.083 1.491 sum 1.786 -10.241 -0.083 10.396 Atomic orbital electron populations 1.70195 1.07818 1.28620 1.48165 1.26433 0.96641 1.02446 0.95961 0.84743 0.77411 0.74861 0.79882 1.18389 1.20372 1.18044 1.21736 0.92545 0.81258 1.53157 0.87834 1.83937 1.35476 1.12204 1.80215 1.19813 0.91419 0.87188 0.93469 1.21271 0.92697 1.00552 1.11772 1.21302 1.00516 0.91430 0.94491 1.21115 0.93910 0.98303 1.07314 1.21155 0.94171 0.95845 0.95839 1.17537 0.88695 0.91938 1.15495 1.19055 0.95077 0.98373 0.99169 1.23483 0.88177 0.92163 0.93080 1.68159 1.10491 1.19240 1.22692 1.21368 0.95261 0.91744 0.91817 1.21341 0.92069 1.08311 1.09667 1.24520 0.96855 0.93577 0.92746 1.77760 0.97944 1.19547 1.21420 1.47229 1.06256 1.27351 1.27973 1.22355 0.79392 0.98694 0.97732 0.92145 0.85974 0.83590 0.82784 0.83345 0.82076 0.80697 0.73955 0.77768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.09 13.67 21.61 0.30 -53.79 16 2 C -0.02 -0.87 5.49 84.83 0.47 -0.40 16 3 Si 1.01 41.37 29.55 68.60 2.03 43.40 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 5 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 7 C -0.41 -22.15 9.49 67.92 0.64 -21.51 16 8 H 0.10 5.08 5.21 -2.91 -0.02 5.06 16 9 O -0.21 -11.52 8.17 -21.73 -0.18 -11.70 16 10 C 0.13 5.85 6.57 22.81 0.15 6.00 16 11 C -0.24 -9.29 9.16 22.36 0.20 -9.09 16 12 C -0.06 -1.70 10.03 22.29 0.22 -1.48 16 13 C -0.19 -4.72 10.03 22.27 0.22 -4.49 16 14 C -0.05 -1.45 9.50 22.47 0.21 -1.24 16 15 C -0.13 -4.95 5.50 -19.93 -0.11 -5.06 16 16 C -0.11 -4.23 5.24 -20.21 -0.11 -4.34 16 17 C 0.22 9.30 10.06 85.56 0.86 10.16 16 18 N -0.49 -21.66 10.47 -191.78 -2.01 -23.67 16 19 C 0.23 8.94 7.91 133.12 1.05 9.99 16 20 C -0.28 -9.01 10.91 22.53 0.25 -8.77 16 21 C 0.10 2.65 11.94 84.87 1.01 3.66 16 22 N -0.34 -11.17 12.66 -57.49 -0.73 -11.90 16 23 N -0.32 -11.71 3.89 -191.68 -0.75 -12.46 16 24 C 0.15 5.21 10.76 83.62 0.90 6.11 16 25 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 26 H 0.12 4.78 5.64 -2.91 -0.02 4.76 16 27 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 28 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 29 H 0.15 3.16 8.04 -2.91 -0.02 3.13 16 30 H 0.16 7.38 7.75 -2.91 -0.02 7.35 16 31 H 0.18 4.73 8.06 -2.91 -0.02 4.71 16 32 H 0.24 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.21 5.42 8.04 -2.91 -0.02 5.39 16 Total: -1.00 -71.37 297.56 5.80 -65.56 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 1.16 Total: 25.01 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: 5.98 Total: -20.45 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -3.19 Total: -101.82 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.18 Total: -11.70 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -71.37 5.80 -65.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240435090.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.704 kcal (2) G-P(sol) polarization free energy of solvation -71.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds