Wall clock time and date at job start Tue Mar 31 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30840 * 1 3 3 Si 1.86803 * 119.99522 * 2 1 4 4 H 1.48497 * 109.46973 * 269.99577 * 3 2 1 5 5 H 1.48498 * 109.47146 * 30.00168 * 3 2 1 6 6 H 1.48499 * 109.46669 * 150.00042 * 3 2 1 7 7 C 1.39937 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99925 * 197.99623 * 7 2 1 9 9 C 1.40922 * 119.99927 * 18.00633 * 7 2 1 10 10 C 1.41045 * 120.08635 * 204.74657 * 9 7 2 11 11 C 1.36127 * 119.94180 * 179.73614 * 10 9 7 12 12 C 1.40132 * 120.12292 * 0.53713 * 11 10 9 13 13 C 1.47560 * 119.90452 * 179.75874 * 12 11 10 14 14 C 1.39361 * 120.34014 * 64.76964 * 13 12 11 15 15 C 1.38273 * 120.19573 * 179.97438 * 14 13 12 16 16 C 1.38098 * 120.86873 * 359.95308 * 15 14 13 17 17 C 1.39079 * 120.26295 * 0.02640 * 16 15 14 18 18 N 1.37770 * 133.34299 * 180.30794 * 17 16 15 19 19 H 0.97006 * 125.07435 * 359.95085 * 18 17 16 20 20 C 1.36639 * 109.85477 * 180.10966 * 18 17 16 21 21 C 1.34568 * 109.86181 * 359.59533 * 20 18 17 22 22 C 1.40582 * 119.52206 * 359.97438 * 17 16 15 23 23 C 1.40342 * 120.18392 * 359.48402 * 12 11 10 24 24 F 1.35096 * 119.97929 * 180.25300 * 23 12 11 25 25 C 1.36378 * 120.04800 * 0.23265 * 23 12 11 26 26 H 0.97003 * 120.00204 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.02670 * 0.02562 * 10 9 7 28 28 H 1.08002 * 119.93485 * 180.29745 * 11 10 9 29 29 H 1.08007 * 119.90194 * 359.97438 * 14 13 12 30 30 H 1.07999 * 119.56727 * 179.97438 * 15 14 13 31 31 H 1.07999 * 119.86396 * 180.02562 * 16 15 14 32 32 H 1.07995 * 125.07229 * 179.85663 * 20 18 17 33 33 H 1.08002 * 126.50329 * 180.20511 * 21 20 18 34 34 H 1.07998 * 120.06304 * 180.02562 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4403 0.7000 7 6 2.0081 -1.2119 0.0005 8 1 3.0485 -1.2346 0.2895 9 6 1.3553 -2.4026 -0.3762 10 6 1.8273 -3.6464 0.0922 11 6 1.1912 -4.7944 -0.2692 12 6 0.0750 -4.7436 -1.1149 13 6 -0.6076 -5.9913 -1.5079 14 6 -1.2512 -6.7733 -0.5505 15 6 -1.8904 -7.9417 -0.9222 16 6 -1.9043 -8.3533 -2.2403 17 6 -1.2711 -7.5940 -3.2184 18 7 -1.1230 -7.7399 -4.5803 19 1 -1.4789 -8.4747 -5.1042 20 6 -0.3969 -6.6970 -5.0825 21 6 -0.0633 -5.8521 -4.0897 22 6 -0.6170 -6.4036 -2.8558 23 6 -0.3989 -3.5088 -1.5844 24 9 -1.4784 -3.4643 -2.3954 25 6 0.2294 -2.3538 -1.2223 26 1 -0.4850 0.8400 -0.0004 27 1 2.6898 -3.6876 0.7409 28 1 1.5499 -5.7464 0.0935 29 1 -1.2508 -6.4657 0.4848 30 1 -2.3857 -8.5401 -0.1718 31 1 -2.4088 -9.2686 -2.5126 32 1 -0.1338 -6.5676 -6.1219 33 1 0.5061 -4.9395 -4.1868 34 1 -0.1353 -1.4035 -1.5831 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240711494.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:02 Heat of formation + Delta-G solvation = 23.132982 kcal Electronic energy + Delta-G solvation = -20622.780168 eV Core-core repulsion = 17399.557511 eV Total energy + Delta-G solvation = -3223.222657 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.53956 -40.73570 -37.59627 -36.24381 -33.89771 -31.87954 -29.87424 -29.11429 -28.76849 -27.99930 -25.24343 -22.45081 -21.49242 -20.89725 -20.65353 -19.86668 -17.64557 -17.37077 -15.95345 -15.73528 -15.05775 -14.86695 -14.61849 -14.30758 -14.17581 -13.98408 -13.58688 -13.06306 -12.70693 -12.61449 -12.35343 -12.03126 -11.72345 -11.38132 -11.29827 -11.19970 -11.04995 -10.85466 -10.45924 -10.35891 -9.94463 -9.62634 -9.25767 -9.14666 -7.81990 -7.60861 -7.43425 -7.06476 -6.88109 -4.51993 1.49418 2.08214 2.59744 2.92482 3.00494 3.03888 3.07252 3.14009 3.43508 3.81675 4.33565 4.47417 5.16781 5.17223 5.42562 5.48456 5.62254 5.73761 5.77537 5.89995 6.02187 6.20991 6.25987 6.46601 6.54619 6.69580 6.89385 6.91106 6.93250 7.06971 7.11715 7.13786 7.31703 7.52938 7.55543 7.72769 7.80962 7.84442 7.89169 8.14901 8.46199 8.70004 8.77863 9.99839 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.029651 B = 0.004530 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.102821 B = 6179.851366 C = 6509.719727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.449 4.449 8 H 0.085 0.915 9 C 0.135 3.865 10 C -0.235 4.235 11 C -0.042 4.042 12 C -0.234 4.234 13 C 0.062 3.938 14 C -0.156 4.156 15 C -0.092 4.092 16 C -0.159 4.159 17 C 0.095 3.905 18 N -0.603 5.603 19 H 0.409 0.591 20 C 0.025 3.975 21 C -0.177 4.177 22 C -0.100 4.100 23 C 0.137 3.863 24 F -0.161 7.161 25 C -0.211 4.211 26 H 0.285 0.715 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.164 0.836 33 H 0.142 0.858 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.514 -9.608 -5.509 11.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.477 4.477 8 H 0.103 0.897 9 C 0.132 3.868 10 C -0.255 4.255 11 C -0.061 4.061 12 C -0.237 4.237 13 C 0.061 3.939 14 C -0.175 4.175 15 C -0.111 4.111 16 C -0.180 4.180 17 C -0.012 4.012 18 N -0.207 5.207 19 H 0.244 0.756 20 C -0.099 4.099 21 C -0.202 4.202 22 C -0.105 4.105 23 C 0.118 3.882 24 F -0.140 7.140 25 C -0.232 4.232 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.128 0.872 32 H 0.182 0.818 33 H 0.160 0.840 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.793 -9.500 -5.615 11.180 hybrid contribution -0.097 0.473 -0.387 0.619 sum -1.889 -9.026 -6.002 11.003 Atomic orbital electron populations 1.69834 1.07785 1.29877 1.32589 1.26035 0.94773 1.01765 0.92012 0.86235 0.80502 0.80082 0.79564 1.19026 1.20114 1.18358 1.19627 0.98467 0.91150 1.38420 0.89704 1.17422 0.89778 0.92350 0.87268 1.20693 1.04587 0.92611 1.07587 1.20160 0.93759 0.97001 0.95168 1.17924 1.03825 0.89600 1.12303 1.18269 0.92854 0.92741 0.90012 1.21091 1.01182 0.95933 0.99325 1.20634 0.99329 0.96559 0.94617 1.19826 1.05641 1.00682 0.91881 1.18208 1.01734 0.97548 0.83679 1.41638 1.49515 1.23515 1.06001 0.75556 1.21711 0.99558 0.89849 0.98810 1.21734 1.06451 1.01310 0.90738 1.19297 1.02396 0.95179 0.93607 1.17346 0.84894 0.94004 0.91931 1.91352 1.53769 1.97480 1.71404 1.20918 1.01594 0.96082 1.04559 0.90356 0.88265 0.88429 0.86172 0.86393 0.87239 0.81828 0.83983 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.56 10.96 55.55 0.61 -18.96 16 2 C 0.07 1.79 5.12 -17.34 -0.09 1.70 16 3 Si 0.91 17.82 29.60 -169.99 -5.03 12.79 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.45 -11.35 9.02 -37.93 -0.34 -11.69 16 8 H 0.08 2.03 7.91 -52.49 -0.42 1.62 16 9 C 0.13 3.49 5.57 -106.80 -0.60 2.89 16 10 C -0.24 -5.56 9.73 -39.28 -0.38 -5.94 16 11 C -0.04 -0.95 9.66 -39.63 -0.38 -1.33 16 12 C -0.23 -5.41 5.26 -104.59 -0.55 -5.96 16 13 C 0.06 1.29 5.01 -104.65 -0.52 0.76 16 14 C -0.16 -2.87 9.73 -39.15 -0.38 -3.25 16 15 C -0.09 -1.43 9.99 -39.62 -0.40 -1.83 16 16 C -0.16 -2.40 10.06 -39.32 -0.40 -2.80 16 17 C 0.09 1.58 7.27 -84.00 -0.61 0.97 16 18 N -0.60 -8.01 6.07 -10.64 -0.06 -8.08 16 19 H 0.41 3.83 8.96 -40.82 -0.37 3.46 16 20 C 0.03 0.35 11.83 -16.71 -0.20 0.15 16 21 C -0.18 -3.16 10.95 -37.75 -0.41 -3.58 16 22 C -0.10 -1.97 5.97 -104.85 -0.63 -2.59 16 23 C 0.14 3.43 7.19 -39.46 -0.28 3.14 16 24 F -0.16 -3.99 16.66 2.25 0.04 -3.95 16 25 C -0.21 -5.54 8.59 -39.24 -0.34 -5.87 16 26 H 0.29 6.51 8.30 -40.82 -0.34 6.17 16 27 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 28 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.12 2.11 8.06 -52.48 -0.42 1.69 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 32 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.14 2.60 8.06 -52.49 -0.42 2.18 16 34 H 0.13 3.47 6.16 -52.49 -0.32 3.15 16 LS Contribution 303.30 15.07 4.57 4.57 Total: -1.00 -28.88 303.30 -9.58 -38.46 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -3.20 Total: 10.36 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: -6.51 Total: -35.20 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.54 Total: -27.03 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.04 Total: -3.95 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.88 -9.58 -38.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240711494.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.595 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds