Wall clock time and date at job start Tue Mar 31 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30840 * 1 3 3 Si 1.86803 * 119.99522 * 2 1 4 4 H 1.48497 * 109.46973 * 269.99577 * 3 2 1 5 5 H 1.48498 * 109.47146 * 30.00168 * 3 2 1 6 6 H 1.48499 * 109.46669 * 150.00042 * 3 2 1 7 7 C 1.39937 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99925 * 197.99623 * 7 2 1 9 9 C 1.40922 * 119.99927 * 18.00633 * 7 2 1 10 10 C 1.41045 * 120.08635 * 204.74657 * 9 7 2 11 11 C 1.36127 * 119.94180 * 179.73614 * 10 9 7 12 12 C 1.40132 * 120.12292 * 0.53713 * 11 10 9 13 13 C 1.47560 * 119.90452 * 179.75874 * 12 11 10 14 14 C 1.39361 * 120.34014 * 64.76964 * 13 12 11 15 15 C 1.38273 * 120.19573 * 179.97438 * 14 13 12 16 16 C 1.38098 * 120.86873 * 359.95308 * 15 14 13 17 17 C 1.39079 * 120.26295 * 0.02640 * 16 15 14 18 18 N 1.37770 * 133.34299 * 180.30794 * 17 16 15 19 19 H 0.97006 * 125.07435 * 359.95085 * 18 17 16 20 20 C 1.36639 * 109.85477 * 180.10966 * 18 17 16 21 21 C 1.34568 * 109.86181 * 359.59533 * 20 18 17 22 22 C 1.40582 * 119.52206 * 359.97438 * 17 16 15 23 23 C 1.40342 * 120.18392 * 359.48402 * 12 11 10 24 24 F 1.35096 * 119.97929 * 180.25300 * 23 12 11 25 25 C 1.36378 * 120.04800 * 0.23265 * 23 12 11 26 26 H 0.97003 * 120.00204 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.02670 * 0.02562 * 10 9 7 28 28 H 1.08002 * 119.93485 * 180.29745 * 11 10 9 29 29 H 1.08007 * 119.90194 * 359.97438 * 14 13 12 30 30 H 1.07999 * 119.56727 * 179.97438 * 15 14 13 31 31 H 1.07999 * 119.86396 * 180.02562 * 16 15 14 32 32 H 1.07995 * 125.07229 * 179.85663 * 20 18 17 33 33 H 1.08002 * 126.50329 * 180.20511 * 21 20 18 34 34 H 1.07998 * 120.06304 * 180.02562 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4403 0.7000 7 6 2.0081 -1.2119 0.0005 8 1 3.0485 -1.2346 0.2895 9 6 1.3553 -2.4026 -0.3762 10 6 1.8273 -3.6464 0.0922 11 6 1.1912 -4.7944 -0.2692 12 6 0.0750 -4.7436 -1.1149 13 6 -0.6076 -5.9913 -1.5079 14 6 -1.2512 -6.7733 -0.5505 15 6 -1.8904 -7.9417 -0.9222 16 6 -1.9043 -8.3533 -2.2403 17 6 -1.2711 -7.5940 -3.2184 18 7 -1.1230 -7.7399 -4.5803 19 1 -1.4789 -8.4747 -5.1042 20 6 -0.3969 -6.6970 -5.0825 21 6 -0.0633 -5.8521 -4.0897 22 6 -0.6170 -6.4036 -2.8558 23 6 -0.3989 -3.5088 -1.5844 24 9 -1.4784 -3.4643 -2.3954 25 6 0.2294 -2.3538 -1.2223 26 1 -0.4850 0.8400 -0.0004 27 1 2.6898 -3.6876 0.7409 28 1 1.5499 -5.7464 0.0935 29 1 -1.2508 -6.4657 0.4848 30 1 -2.3857 -8.5401 -0.1718 31 1 -2.4088 -9.2686 -2.5126 32 1 -0.1338 -6.5676 -6.1219 33 1 0.5061 -4.9395 -4.1868 34 1 -0.1353 -1.4035 -1.5831 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240711494.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:02 Heat of formation + Delta-G solvation = 9.071877 kcal Electronic energy + Delta-G solvation = -20623.389904 eV Core-core repulsion = 17399.557511 eV Total energy + Delta-G solvation = -3223.832392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.51100 -41.96930 -39.38189 -37.61744 -35.67077 -33.35690 -31.41251 -31.00664 -30.09489 -29.46263 -26.96233 -23.98103 -23.08778 -22.39446 -22.25250 -21.22284 -19.52706 -18.70520 -17.69658 -17.12894 -16.69674 -16.44688 -16.37402 -16.18225 -15.66557 -15.23145 -14.95402 -14.79130 -14.40132 -13.98765 -13.93537 -13.54899 -13.37848 -13.06561 -12.85162 -12.70132 -12.45094 -12.41415 -12.11875 -11.90106 -11.75265 -11.35923 -11.06158 -10.49323 -9.44968 -9.29693 -9.07831 -8.74587 -8.38919 -6.43829 0.15924 0.73183 0.86164 0.99360 1.38562 1.50131 1.53399 1.89112 2.17367 2.34544 2.59614 3.03545 3.56742 3.83186 3.92837 4.09669 4.25863 4.39506 4.40513 4.49696 4.56363 4.80147 4.84035 4.99035 5.02598 5.07893 5.13772 5.20781 5.29172 5.60367 5.66687 5.71383 5.75696 5.85362 5.89151 5.98401 6.03931 6.24769 6.33777 6.55263 6.80098 6.85064 6.87642 8.21896 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.029651 B = 0.004530 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.102821 B = 6179.851366 C = 6509.719727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.034 3.966 3 Si 0.989 3.011 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.481 4.481 8 H 0.091 0.909 9 C 0.107 3.893 10 C -0.241 4.241 11 C -0.045 4.045 12 C -0.220 4.220 13 C 0.010 3.990 14 C -0.160 4.160 15 C -0.098 4.098 16 C -0.139 4.139 17 C 0.080 3.920 18 N -0.583 5.583 19 H 0.432 0.568 20 C 0.069 3.931 21 C -0.239 4.239 22 C -0.127 4.127 23 C 0.120 3.880 24 F -0.166 7.166 25 C -0.234 4.234 26 H 0.292 0.708 27 H 0.115 0.885 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.212 0.788 33 H 0.119 0.881 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 -12.046 -6.498 13.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.174 1.174 7 C -0.509 4.509 8 H 0.109 0.891 9 C 0.104 3.896 10 C -0.260 4.260 11 C -0.063 4.063 12 C -0.222 4.222 13 C 0.010 3.990 14 C -0.179 4.179 15 C -0.117 4.117 16 C -0.160 4.160 17 C -0.027 4.027 18 N -0.188 5.188 19 H 0.273 0.727 20 C -0.058 4.058 21 C -0.264 4.264 22 C -0.132 4.132 23 C 0.101 3.899 24 F -0.145 7.145 25 C -0.254 4.254 26 H 0.103 0.897 27 H 0.133 0.867 28 H 0.143 0.857 29 H 0.136 0.864 30 H 0.173 0.827 31 H 0.170 0.830 32 H 0.229 0.771 33 H 0.137 0.863 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.123 -11.987 -6.613 13.854 hybrid contribution -0.098 0.999 -0.188 1.022 sum -2.221 -10.988 -6.801 13.112 Atomic orbital electron populations 1.69901 1.09479 1.31188 1.33432 1.26954 0.95424 1.05140 0.90802 0.85100 0.79234 0.75190 0.79635 1.18724 1.19199 1.17391 1.19911 0.98951 0.92024 1.39967 0.89082 1.17746 0.90190 0.93750 0.87894 1.20937 1.05081 0.92380 1.07626 1.20474 0.93279 0.97754 0.94806 1.18261 1.03261 0.90189 1.10479 1.18319 0.96052 0.92970 0.91702 1.21238 1.01082 0.96785 0.98815 1.21002 0.98914 0.95751 0.96002 1.20332 1.03413 1.01139 0.91107 1.18422 1.01964 0.96926 0.85356 1.41642 1.48361 1.23800 1.05029 0.72726 1.22282 0.95915 0.87743 0.99812 1.21745 1.09900 1.02721 0.92076 1.19576 1.03275 0.96856 0.93466 1.17573 0.85091 0.94729 0.92520 1.91315 1.53998 1.97547 1.71619 1.20841 1.02871 0.95716 1.05996 0.89705 0.86668 0.85721 0.86374 0.82718 0.83040 0.77149 0.86264 0.87487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.03 10.96 21.83 0.24 -42.79 16 2 C 0.03 1.67 5.12 85.25 0.44 2.11 16 3 Si 0.99 37.20 29.60 68.60 2.03 39.23 16 4 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 5 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 6 H -0.25 -8.97 7.11 99.48 0.71 -8.27 16 7 C -0.48 -25.35 9.02 23.34 0.21 -25.14 16 8 H 0.09 4.50 7.91 -2.91 -0.02 4.48 16 9 C 0.11 5.84 5.57 -21.28 -0.12 5.72 16 10 C -0.24 -11.78 9.73 22.47 0.22 -11.56 16 11 C -0.04 -2.06 9.66 22.24 0.21 -1.84 16 12 C -0.22 -10.56 5.26 -19.85 -0.10 -10.67 16 13 C 0.01 0.43 5.01 -19.88 -0.10 0.33 16 14 C -0.16 -5.77 9.73 22.55 0.22 -5.55 16 15 C -0.10 -2.73 9.99 22.24 0.22 -2.51 16 16 C -0.14 -3.63 10.06 22.44 0.23 -3.40 16 17 C 0.08 2.45 7.27 38.98 0.28 2.74 16 18 N -0.58 -13.20 6.07 -187.57 -1.14 -14.34 16 19 H 0.43 5.85 8.96 -92.70 -0.83 5.02 16 20 C 0.07 1.71 11.83 83.10 0.98 2.70 16 21 C -0.24 -8.60 10.95 23.46 0.26 -8.34 16 22 C -0.13 -4.95 5.97 -20.01 -0.12 -5.07 16 23 C 0.12 6.36 7.19 22.35 0.16 6.52 16 24 F -0.17 -8.73 16.66 44.97 0.75 -7.98 16 25 C -0.23 -13.12 8.59 22.49 0.19 -12.93 16 26 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 27 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 28 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 29 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 30 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 31 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 32 H 0.21 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 34 H 0.11 6.31 6.16 -2.91 -0.02 6.29 16 Total: -1.00 -67.78 303.30 5.38 -62.40 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.32 Total: 30.40 kcal Atomic # 6 Polarization: -70.10 SS G_CDS: 3.18 Total: -66.91 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -0.90 Total: -57.13 kcal Atomic # 9 Polarization: -8.73 SS G_CDS: 0.75 Total: -7.98 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Total: -67.78 5.38 -62.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240711494.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.471 kcal (2) G-P(sol) polarization free energy of solvation -67.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds