Wall clock time and date at job start Tue Mar 31 2020 05:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31603 * 1 3 3 Si 1.86810 * 120.00099 * 2 1 4 4 H 1.48503 * 109.46775 * 270.00057 * 3 2 1 5 5 H 1.48509 * 109.46849 * 29.99674 * 3 2 1 6 6 H 1.48496 * 109.47194 * 149.99651 * 3 2 1 7 7 C 1.38584 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99802 * 359.97438 * 7 2 1 9 9 O 1.34810 * 120.00360 * 180.27918 * 7 2 1 10 10 C 1.35678 * 117.00344 * 174.70563 * 9 7 2 11 11 C 1.38703 * 120.14030 * 5.60308 * 10 9 7 12 12 C 1.38150 * 120.06440 * 179.72295 * 11 10 9 13 13 C 1.38466 * 120.34612 * 0.55047 * 12 11 10 14 14 C 1.37985 * 120.28144 * 359.72040 * 13 12 11 15 15 C 1.39410 * 119.93536 * 0.02562 * 14 13 12 16 16 C 1.48038 * 120.17419 * 180.02562 * 15 14 13 17 17 C 1.39926 * 126.40068 * 65.00475 * 16 15 14 18 18 N 1.31112 * 108.86116 * 179.97438 * 17 16 15 19 19 N 1.39905 * 109.26578 * 359.97438 * 18 17 16 20 20 C 1.36552 * 132.37778 * 179.97438 * 19 18 17 21 21 C 1.35590 * 119.12017 * 179.31989 * 20 19 18 22 22 C 1.40170 * 119.42868 * 0.59716 * 21 20 19 23 23 N 1.31346 * 120.22463 * 359.59747 * 22 21 20 24 24 C 1.33621 * 120.84314 * 0.02562 * 23 22 21 25 25 H 0.97003 * 119.99666 * 0.02562 * 1 2 3 26 26 H 1.08006 * 119.96389 * 359.97013 * 11 10 9 27 27 H 1.08000 * 119.82696 * 180.27326 * 12 11 10 28 28 H 1.08007 * 119.85657 * 179.74950 * 13 12 11 29 29 H 1.08003 * 120.03382 * 179.97438 * 14 13 12 30 30 H 1.08002 * 125.56770 * 359.97438 * 17 16 15 31 31 H 1.07999 * 120.43994 * 0.02562 * 20 19 18 32 32 H 1.08007 * 120.28467 * 180.19437 * 21 20 19 33 33 H 1.08001 * 119.89384 * 179.62410 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4474 2.6528 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0090 -1.2001 0.0005 8 1 1.4690 -2.1354 0.0014 9 8 3.3571 -1.2002 0.0062 10 6 3.9726 -2.4041 0.1180 11 6 3.2253 -3.5725 0.1032 12 6 3.8542 -4.7977 0.2113 13 6 5.2304 -4.8682 0.3464 14 6 5.9873 -3.7147 0.3684 15 6 5.3654 -2.4722 0.2549 16 6 6.1723 -1.2313 0.2774 17 6 7.1180 -0.8384 -0.6762 18 7 7.6261 0.3162 -0.3186 19 7 7.0362 0.7283 0.8812 20 6 7.2113 1.8363 1.6599 21 6 6.4713 1.9738 2.7877 22 6 5.5541 0.9727 3.1360 23 7 5.4081 -0.0852 2.3714 24 6 6.1267 -0.2273 1.2539 25 1 -0.4850 0.8401 -0.0004 26 1 2.1509 -3.5244 0.0030 27 1 3.2689 -5.7053 0.1949 28 1 5.7135 -5.8302 0.4344 29 1 7.0605 -3.7742 0.4744 30 1 7.3856 -1.3952 -1.5621 31 1 7.9215 2.5985 1.3752 32 1 6.5922 2.8442 3.4158 33 1 4.9652 1.0716 4.0359 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240931579.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:50 Heat of formation + Delta-G solvation = 103.815604 kcal Electronic energy + Delta-G solvation = -21300.211018 eV Core-core repulsion = 18100.406984 eV Total energy + Delta-G solvation = -3199.804034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.19633 -40.72750 -38.95879 -38.06044 -35.12551 -34.43146 -32.51479 -31.97424 -30.75475 -28.94678 -27.18049 -25.72565 -24.54015 -23.64336 -22.72574 -21.66739 -19.74984 -19.29628 -18.70425 -18.16622 -17.20559 -17.02004 -16.61200 -16.23998 -15.66888 -15.56591 -15.35897 -15.10310 -14.68492 -14.33045 -14.10672 -14.06773 -13.82413 -13.57894 -13.15045 -12.77453 -12.51218 -12.43282 -12.33254 -12.02503 -11.94498 -11.24654 -10.93877 -10.74531 -10.47197 -9.71499 -9.08999 -8.55440 -8.51306 -6.18351 -0.36207 -0.06804 0.55509 0.77849 1.14157 1.16982 1.22819 1.38798 1.61151 2.21412 2.51122 2.77952 3.05263 3.06954 3.16042 3.30252 3.59748 4.07389 4.09977 4.19805 4.24166 4.34682 4.48840 4.54254 4.66780 4.71887 4.79968 5.02057 5.11585 5.27977 5.34019 5.45928 5.59044 5.71393 5.79980 5.85824 5.95292 6.30950 6.41592 6.79192 6.85678 7.68524 8.61288 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.011710 B = 0.010263 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.646231 B = 2727.529700 C = 4411.380346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.015 3.985 3 Si 0.967 3.033 4 H -0.282 1.282 5 H -0.264 1.264 6 H -0.271 1.271 7 C -0.385 4.385 8 H 0.081 0.919 9 O -0.230 6.230 10 C 0.138 3.862 11 C -0.244 4.244 12 C -0.076 4.076 13 C -0.180 4.180 14 C -0.064 4.064 15 C -0.076 4.076 16 C -0.203 4.203 17 C 0.102 3.898 18 N -0.335 5.335 19 N -0.324 5.324 20 C 0.139 3.861 21 C -0.207 4.207 22 C 0.162 3.838 23 N -0.493 5.493 24 C 0.257 3.743 25 H 0.282 0.718 26 H 0.107 0.893 27 H 0.140 0.860 28 H 0.154 0.846 29 H 0.146 0.854 30 H 0.225 0.775 31 H 0.216 0.784 32 H 0.221 0.779 33 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.629 2.009 5.718 17.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.182 4.182 3 Si 0.791 3.209 4 H -0.208 1.208 5 H -0.189 1.189 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.098 0.902 9 O -0.136 6.136 10 C 0.088 3.912 11 C -0.263 4.263 12 C -0.094 4.094 13 C -0.198 4.198 14 C -0.082 4.082 15 C -0.079 4.079 16 C -0.216 4.216 17 C -0.075 4.075 18 N -0.159 5.159 19 N -0.094 5.094 20 C 0.005 3.995 21 C -0.230 4.230 22 C -0.021 4.021 23 N -0.204 5.204 24 C 0.028 3.972 25 H 0.092 0.908 26 H 0.125 0.875 27 H 0.158 0.842 28 H 0.172 0.828 29 H 0.164 0.836 30 H 0.241 0.759 31 H 0.233 0.767 32 H 0.237 0.763 33 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 16.866 2.457 5.330 17.858 hybrid contribution -0.787 0.535 -0.172 0.967 sum 16.079 2.992 5.158 17.149 Atomic orbital electron populations 1.69747 1.06529 1.29114 1.51248 1.25049 0.95664 1.01331 0.96183 0.85269 0.78703 0.78673 0.78228 1.20771 1.18853 1.19583 1.20717 0.78595 0.95865 1.51019 0.90193 1.83556 1.20480 1.27230 1.82369 1.19682 0.92263 0.85115 0.94158 1.21263 1.00070 0.93351 1.11634 1.21189 0.95594 0.96095 0.96565 1.21107 0.93139 0.98905 1.06651 1.21155 1.00213 0.89843 0.96962 1.17282 0.88015 0.92343 1.10214 1.18293 1.07215 0.98219 0.97866 1.24339 0.92488 0.92058 0.98659 1.77481 1.24578 1.16809 0.97040 1.47239 1.27912 1.16336 1.17961 1.22938 0.99569 0.87527 0.89442 1.22408 0.98200 1.04013 0.98398 1.24234 0.93332 0.87115 0.97436 1.68162 1.22227 1.26418 1.03630 1.20740 0.90588 0.91379 0.94458 0.90838 0.87522 0.84198 0.82814 0.83636 0.75854 0.76695 0.76265 0.77695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.90 13.97 21.60 0.30 -56.59 16 2 C 0.02 0.93 5.49 84.81 0.47 1.39 16 3 Si 0.97 48.60 28.62 68.60 1.96 50.57 16 4 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 5 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.27 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.39 -23.61 9.94 67.90 0.68 -22.93 16 8 H 0.08 5.12 5.44 -2.91 -0.02 5.11 16 9 O -0.23 -13.13 8.01 -21.73 -0.17 -13.31 16 10 C 0.14 6.88 6.65 22.84 0.15 7.03 16 11 C -0.24 -11.29 9.16 22.36 0.20 -11.09 16 12 C -0.08 -2.73 10.03 22.30 0.22 -2.50 16 13 C -0.18 -5.53 10.03 22.26 0.22 -5.31 16 14 C -0.06 -2.13 9.78 22.49 0.22 -1.91 16 15 C -0.08 -3.22 5.76 -19.94 -0.11 -3.34 16 16 C -0.20 -8.27 5.14 -19.81 -0.10 -8.37 16 17 C 0.10 3.48 11.93 85.21 1.02 4.49 16 18 N -0.34 -11.51 12.62 -56.84 -0.72 -12.23 16 19 N -0.32 -11.00 3.89 -191.75 -0.75 -11.74 16 20 C 0.14 3.14 11.30 83.35 0.94 4.08 16 21 C -0.21 -3.83 10.05 22.13 0.22 -3.61 16 22 C 0.16 4.34 11.27 85.23 0.96 5.30 16 23 N -0.49 -19.51 10.47 -191.82 -2.01 -21.52 16 24 C 0.26 10.42 7.86 133.58 1.05 11.46 16 25 H 0.28 15.97 8.31 -92.71 -0.77 15.19 16 26 H 0.11 5.39 5.64 -2.91 -0.02 5.37 16 27 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 28 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 29 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 30 H 0.23 5.75 8.06 -2.91 -0.02 5.73 16 31 H 0.22 2.80 8.06 -2.91 -0.02 2.78 16 32 H 0.22 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.21 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -83.35 299.09 5.91 -77.44 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 1.15 Total: 12.68 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: 6.14 Total: -25.30 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -3.17 Total: -102.09 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.17 Total: -13.31 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 1.96 Total: 50.57 kcal Total: -83.35 5.91 -77.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240931579.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.258 kcal (2) G-P(sol) polarization free energy of solvation -83.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds