Wall clock time and date at job start Tue Mar 31 2020 05:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86793 * 120.00015 * 2 1 4 4 H 1.48497 * 109.47370 * 270.00241 * 3 2 1 5 5 H 1.48493 * 109.47270 * 30.00667 * 3 2 1 6 6 H 1.48500 * 109.46902 * 150.00159 * 3 2 1 7 7 C 1.39900 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00153 * 197.80878 * 7 2 1 9 9 C 1.41333 * 120.00463 * 17.81247 * 7 2 1 10 10 C 1.40479 * 120.19139 * 24.62467 * 9 7 2 11 11 C 1.38890 * 119.63069 * 179.97438 * 10 9 7 12 12 C 1.47895 * 119.98059 * 180.02562 * 11 10 9 13 13 C 1.35617 * 125.22123 * 359.68572 * 12 11 10 14 14 C 1.46199 * 106.94284 * 180.27022 * 13 12 11 15 15 C 1.39803 * 133.82260 * 180.02562 * 14 13 12 16 16 C 1.36600 * 119.76287 * 179.97438 * 15 14 13 17 17 C 1.38836 * 120.53357 * 359.97438 * 16 15 14 18 18 C 1.37793 * 120.68666 * 359.97438 * 17 16 15 19 19 C 1.39107 * 119.81431 * 0.02562 * 18 17 16 20 20 N 1.37575 * 125.21362 * 180.02562 * 12 11 10 21 21 H 0.97001 * 125.10750 * 359.72575 * 20 12 11 22 22 C 1.40025 * 120.03079 * 0.27175 * 11 10 9 23 23 C 1.38176 * 120.39907 * 359.45182 * 22 11 10 24 24 C 1.38104 * 120.36648 * 0.54818 * 23 22 11 25 25 F 1.35102 * 120.01927 * 179.74627 * 24 23 22 26 26 H 0.97005 * 120.00207 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.18507 * 359.95770 * 10 9 7 28 28 H 1.07995 * 126.52927 * 0.25252 * 13 12 11 29 29 H 1.07994 * 120.11792 * 0.02562 * 15 14 13 30 30 H 1.07995 * 119.73186 * 180.02562 * 16 15 14 31 31 H 1.07997 * 119.65939 * 180.02562 * 17 16 15 32 32 H 1.07996 * 120.08956 * 180.02562 * 18 17 16 33 33 H 1.08001 * 119.79819 * 179.70135 * 22 11 10 34 34 H 1.07990 * 119.81912 * 180.27491 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4901 2.0464 -1.4000 5 1 1.4402 2.6525 0.7001 6 1 3.5402 1.4400 0.7000 7 6 2.0081 -1.2116 -0.0005 8 1 3.0493 -1.2342 0.2855 9 6 1.3523 -2.4061 -0.3755 10 6 0.2255 -2.3604 -1.2131 11 6 -0.4097 -3.5414 -1.5747 12 6 -1.5963 -3.5024 -2.4567 13 6 -2.1552 -2.3768 -2.9664 14 6 -3.3013 -2.7970 -3.7711 15 6 -4.2536 -2.1118 -4.5314 16 6 -5.2283 -2.8096 -5.1863 17 6 -5.2810 -4.1945 -5.1035 18 6 -4.3521 -4.8904 -4.3607 19 6 -3.3501 -4.2014 -3.6851 20 7 -2.3062 -4.6020 -2.8805 21 1 -2.1016 -5.5214 -2.6487 22 6 0.0697 -4.7686 -1.1005 23 6 1.1813 -4.8155 -0.2811 24 6 1.8256 -3.6513 0.0888 25 9 2.9088 -3.7049 0.8944 26 1 -0.4851 0.8401 0.0004 27 1 -0.1450 -1.4121 -1.5737 28 1 -1.8182 -1.3631 -2.8079 29 1 -4.2182 -1.0347 -4.6014 30 1 -5.9634 -2.2798 -5.7738 31 1 -6.0575 -4.7321 -5.6273 32 1 -4.4019 -5.9677 -4.3033 33 1 -0.4300 -5.6843 -1.3801 34 1 1.5457 -5.7674 0.0757 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243107335.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:46 Heat of formation + Delta-G solvation = 16.523848 kcal Electronic energy + Delta-G solvation = -20234.510130 eV Core-core repulsion = 17011.000879 eV Total energy + Delta-G solvation = -3223.509251 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -47.35484 -40.83384 -37.67840 -36.35861 -33.92412 -31.75431 -30.48868 -29.95756 -28.98053 -27.13549 -25.51854 -22.73775 -21.81603 -21.49779 -20.58278 -19.46976 -17.86405 -17.15094 -16.17513 -15.78250 -15.45687 -15.04376 -14.48871 -14.22002 -14.05229 -13.89995 -13.65562 -13.37195 -12.88317 -12.82152 -12.35306 -11.95608 -11.83886 -11.69121 -11.53573 -11.21542 -11.16017 -10.87495 -10.61756 -10.59653 -10.17754 -9.69817 -9.49546 -9.34893 -8.24431 -7.79574 -7.62723 -7.03314 -6.77533 -4.57800 1.25425 1.87448 2.26012 2.58831 2.99077 3.01845 3.03908 3.43747 3.49766 3.80599 4.17937 4.43540 4.97003 5.17068 5.21116 5.31669 5.43048 5.65453 5.69872 5.71034 5.86948 5.95566 6.12125 6.20244 6.30709 6.40521 6.66847 6.72568 6.73990 6.83279 6.98422 7.11167 7.14684 7.30077 7.34410 7.45487 7.70759 7.76269 7.85467 7.95349 8.32540 8.55695 8.61998 9.95669 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.004968 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.089306 B = 5634.239464 C = 7066.728294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.448 4.448 8 H 0.086 0.914 9 C 0.085 3.915 10 C -0.110 4.110 11 C -0.040 4.040 12 C 0.159 3.841 13 C -0.202 4.202 14 C -0.100 4.100 15 C -0.074 4.074 16 C -0.154 4.154 17 C -0.112 4.112 18 C -0.131 4.131 19 C 0.093 3.907 20 N -0.594 5.594 21 H 0.412 0.588 22 C -0.214 4.214 23 C -0.117 4.117 24 C -0.025 4.025 25 F -0.161 7.161 26 H 0.287 0.713 27 H 0.137 0.863 28 H 0.149 0.851 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.914 -3.585 -6.855 10.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.144 4.144 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.476 4.476 8 H 0.104 0.896 9 C 0.082 3.918 10 C -0.130 4.130 11 C -0.041 4.041 12 C 0.052 3.948 13 C -0.226 4.226 14 C -0.105 4.105 15 C -0.092 4.092 16 C -0.174 4.174 17 C -0.131 4.131 18 C -0.152 4.152 19 C -0.014 4.014 20 N -0.197 5.197 21 H 0.249 0.751 22 C -0.234 4.234 23 C -0.136 4.136 24 C -0.045 4.045 25 F -0.140 7.140 26 H 0.098 0.902 27 H 0.154 0.846 28 H 0.167 0.833 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.111 0.889 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.033 -3.522 -6.751 10.365 hybrid contribution 0.542 0.127 0.359 0.662 sum -6.491 -3.395 -6.392 9.722 Atomic orbital electron populations 1.69798 1.07613 1.30028 1.33176 1.25950 0.94831 1.01665 0.91960 0.86184 0.80530 0.79829 0.79625 1.18915 1.20020 1.18372 1.19568 0.98567 0.90801 1.38688 0.89553 1.17522 0.92353 0.91127 0.90842 1.21250 0.97095 0.96249 0.98415 1.17920 0.93317 0.94647 0.98265 1.19083 0.93382 0.85403 0.96951 1.21734 0.98057 0.98054 1.04750 1.19254 0.97868 0.92066 1.01307 1.20295 0.93626 0.99332 0.95982 1.20514 0.99998 0.94144 1.02713 1.20672 0.98550 0.94249 0.99647 1.19967 0.95507 0.98797 1.00933 1.18253 0.91885 0.94143 0.97141 1.41883 1.25342 1.08703 1.43734 0.75121 1.20025 1.00814 0.95136 1.07433 1.20345 0.97024 0.95901 1.00290 1.17921 0.90915 0.94676 1.01008 1.91283 1.53431 1.97291 1.72010 0.90217 0.84591 0.83294 0.86315 0.86582 0.86359 0.86762 0.88893 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.91 10.96 55.54 0.61 -18.30 16 2 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 3 Si 0.91 17.83 29.59 -169.99 -5.03 12.80 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 5 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.45 -11.49 8.77 -37.78 -0.33 -11.82 16 8 H 0.09 2.19 7.73 -52.49 -0.41 1.79 16 9 C 0.08 2.18 5.58 -106.80 -0.60 1.59 16 10 C -0.11 -2.67 8.18 -38.50 -0.31 -2.98 16 11 C -0.04 -0.88 5.87 -105.03 -0.62 -1.49 16 12 C 0.16 3.13 6.87 -82.27 -0.56 2.57 16 13 C -0.20 -3.92 10.40 -37.32 -0.39 -4.31 16 14 C -0.10 -1.75 6.36 -105.15 -0.67 -2.42 16 15 C -0.07 -1.10 10.06 -39.59 -0.40 -1.50 16 16 C -0.15 -1.99 9.97 -39.95 -0.40 -2.38 16 17 C -0.11 -1.39 10.01 -39.52 -0.40 -1.79 16 18 C -0.13 -1.80 10.08 -39.42 -0.40 -2.19 16 19 C 0.09 1.54 7.27 -83.92 -0.61 0.93 16 20 N -0.59 -9.95 5.98 -7.28 -0.04 -10.00 16 21 H 0.41 5.81 7.92 -40.82 -0.32 5.48 16 22 C -0.21 -4.42 9.69 -38.93 -0.38 -4.79 16 23 C -0.12 -2.53 9.99 -39.65 -0.40 -2.92 16 24 C -0.02 -0.61 7.31 -38.56 -0.28 -0.89 16 25 F -0.16 -3.94 16.70 2.25 0.04 -3.91 16 26 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 27 H 0.14 3.33 4.99 -52.48 -0.26 3.07 16 28 H 0.15 2.87 7.16 -52.49 -0.38 2.50 16 29 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 31 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.09 1.61 7.04 -52.49 -0.37 1.25 16 34 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 299.50 15.07 4.51 4.51 Total: -1.00 -27.03 299.50 -9.72 -36.76 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -2.98 Total: 10.84 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: -6.82 Total: -32.70 kcal Atomic # 7 Polarization: -28.86 SS G_CDS: 0.57 Total: -28.29 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.04 Total: -3.91 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.03 -9.72 -36.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243107335.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.281 kcal (2) G-P(sol) polarization free energy of solvation -27.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds