Wall clock time and date at job start Tue Mar 31 2020 05:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86793 * 120.00015 * 2 1 4 4 H 1.48497 * 109.47370 * 270.00241 * 3 2 1 5 5 H 1.48493 * 109.47270 * 30.00667 * 3 2 1 6 6 H 1.48500 * 109.46902 * 150.00159 * 3 2 1 7 7 C 1.39900 * 119.99735 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00153 * 197.80878 * 7 2 1 9 9 C 1.41333 * 120.00463 * 17.81247 * 7 2 1 10 10 C 1.40479 * 120.19139 * 24.62467 * 9 7 2 11 11 C 1.38890 * 119.63069 * 179.97438 * 10 9 7 12 12 C 1.47895 * 119.98059 * 180.02562 * 11 10 9 13 13 C 1.35617 * 125.22123 * 359.68572 * 12 11 10 14 14 C 1.46199 * 106.94284 * 180.27022 * 13 12 11 15 15 C 1.39803 * 133.82260 * 180.02562 * 14 13 12 16 16 C 1.36600 * 119.76287 * 179.97438 * 15 14 13 17 17 C 1.38836 * 120.53357 * 359.97438 * 16 15 14 18 18 C 1.37793 * 120.68666 * 359.97438 * 17 16 15 19 19 C 1.39107 * 119.81431 * 0.02562 * 18 17 16 20 20 N 1.37575 * 125.21362 * 180.02562 * 12 11 10 21 21 H 0.97001 * 125.10750 * 359.72575 * 20 12 11 22 22 C 1.40025 * 120.03079 * 0.27175 * 11 10 9 23 23 C 1.38176 * 120.39907 * 359.45182 * 22 11 10 24 24 C 1.38104 * 120.36648 * 0.54818 * 23 22 11 25 25 F 1.35102 * 120.01927 * 179.74627 * 24 23 22 26 26 H 0.97005 * 120.00207 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.18507 * 359.95770 * 10 9 7 28 28 H 1.07995 * 126.52927 * 0.25252 * 13 12 11 29 29 H 1.07994 * 120.11792 * 0.02562 * 15 14 13 30 30 H 1.07995 * 119.73186 * 180.02562 * 16 15 14 31 31 H 1.07997 * 119.65939 * 180.02562 * 17 16 15 32 32 H 1.07996 * 120.08956 * 180.02562 * 18 17 16 33 33 H 1.08001 * 119.79819 * 179.70135 * 22 11 10 34 34 H 1.07990 * 119.81912 * 180.27491 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4901 2.0464 -1.4000 5 1 1.4402 2.6525 0.7001 6 1 3.5402 1.4400 0.7000 7 6 2.0081 -1.2116 -0.0005 8 1 3.0493 -1.2342 0.2855 9 6 1.3523 -2.4061 -0.3755 10 6 0.2255 -2.3604 -1.2131 11 6 -0.4097 -3.5414 -1.5747 12 6 -1.5963 -3.5024 -2.4567 13 6 -2.1552 -2.3768 -2.9664 14 6 -3.3013 -2.7970 -3.7711 15 6 -4.2536 -2.1118 -4.5314 16 6 -5.2283 -2.8096 -5.1863 17 6 -5.2810 -4.1945 -5.1035 18 6 -4.3521 -4.8904 -4.3607 19 6 -3.3501 -4.2014 -3.6851 20 7 -2.3062 -4.6020 -2.8805 21 1 -2.1016 -5.5214 -2.6487 22 6 0.0697 -4.7686 -1.1005 23 6 1.1813 -4.8155 -0.2811 24 6 1.8256 -3.6513 0.0888 25 9 2.9088 -3.7049 0.8944 26 1 -0.4851 0.8401 0.0004 27 1 -0.1450 -1.4121 -1.5737 28 1 -1.8182 -1.3631 -2.8079 29 1 -4.2182 -1.0347 -4.6014 30 1 -5.9634 -2.2798 -5.7738 31 1 -6.0575 -4.7321 -5.6273 32 1 -4.4019 -5.9677 -4.3033 33 1 -0.4300 -5.6843 -1.3801 34 1 1.5457 -5.7674 0.0757 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243107335.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:46 Heat of formation + Delta-G solvation = 4.491306 kcal Electronic energy + Delta-G solvation = -20235.031900 eV Core-core repulsion = 17011.000879 eV Total energy + Delta-G solvation = -3224.031021 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.25076 -42.11850 -39.31778 -37.63226 -35.70431 -33.03919 -32.10122 -31.63362 -30.20584 -28.54598 -27.33760 -24.17400 -23.39842 -22.84840 -21.98245 -21.00144 -19.46048 -18.57611 -17.98202 -17.19135 -17.09724 -16.34433 -16.17069 -16.02146 -15.44737 -15.21257 -14.96215 -14.62376 -14.54441 -14.42996 -13.82169 -13.68775 -13.47580 -13.18055 -12.96501 -12.80039 -12.46701 -12.37167 -12.19017 -11.93445 -11.71739 -11.46565 -11.17148 -10.70255 -9.73555 -9.61691 -8.88597 -8.76956 -8.31479 -6.48411 -0.09203 0.67891 0.80060 0.84044 1.36818 1.44288 1.50469 1.93626 2.15223 2.17291 2.66718 3.04625 3.47945 3.72412 3.88595 3.97171 4.20673 4.25895 4.32994 4.48096 4.52427 4.58922 4.68199 4.85436 4.90389 5.08728 5.12607 5.20035 5.22480 5.41384 5.58051 5.60853 5.67506 5.75961 5.86704 5.91812 5.98906 6.11861 6.28483 6.44967 6.69947 6.71190 6.76949 8.20236 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.004968 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.089306 B = 5634.239464 C = 7066.728294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.041 3.959 3 Si 0.984 3.016 4 H -0.257 1.257 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.489 4.489 8 H 0.074 0.926 9 C 0.058 3.942 10 C -0.134 4.134 11 C -0.036 4.036 12 C 0.133 3.867 13 C -0.213 4.213 14 C -0.133 4.133 15 C -0.089 4.089 16 C -0.148 4.148 17 C -0.100 4.100 18 C -0.136 4.136 19 C 0.084 3.916 20 N -0.584 5.584 21 H 0.423 0.577 22 C -0.204 4.204 23 C -0.113 4.113 24 C -0.058 4.058 25 F -0.168 7.168 26 H 0.295 0.705 27 H 0.123 0.877 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.149 0.851 31 H 0.159 0.841 32 H 0.144 0.856 33 H 0.133 0.867 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.325 -4.908 -8.646 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.176 4.176 3 Si 0.804 3.196 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.518 4.518 8 H 0.092 0.908 9 C 0.055 3.945 10 C -0.154 4.154 11 C -0.038 4.038 12 C 0.026 3.974 13 C -0.238 4.238 14 C -0.137 4.137 15 C -0.108 4.108 16 C -0.167 4.167 17 C -0.118 4.118 18 C -0.157 4.157 19 C -0.023 4.023 20 N -0.189 5.189 21 H 0.263 0.737 22 C -0.224 4.224 23 C -0.131 4.131 24 C -0.078 4.078 25 F -0.147 7.147 26 H 0.106 0.894 27 H 0.141 0.859 28 H 0.151 0.849 29 H 0.145 0.855 30 H 0.167 0.833 31 H 0.176 0.824 32 H 0.161 0.839 33 H 0.151 0.849 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.455 -4.881 -8.544 13.647 hybrid contribution 1.058 0.421 0.763 1.371 sum -8.398 -4.461 -7.781 12.287 Atomic orbital electron populations 1.69834 1.08807 1.31289 1.33499 1.26723 0.95558 1.04405 0.90943 0.85166 0.78987 0.75580 0.79878 1.18170 1.18657 1.18574 1.19713 0.98421 0.92346 1.41297 0.90759 1.17862 0.93238 0.91917 0.91503 1.21180 0.97772 0.96895 0.99540 1.18152 0.93540 0.94411 0.97683 1.18769 0.93735 0.86747 0.98187 1.21809 0.99174 0.97540 1.05267 1.19448 0.98358 0.93248 1.02690 1.20573 0.93849 1.00191 0.96183 1.20967 0.99382 0.94773 1.01528 1.21229 0.98346 0.94237 0.98033 1.20396 0.94586 1.00440 1.00246 1.18633 0.92345 0.94000 0.97364 1.41714 1.25097 1.08450 1.43618 0.73730 1.20483 1.00024 0.96120 1.05733 1.20702 0.96655 0.96190 0.99599 1.18268 0.91708 0.95601 1.02269 1.91246 1.53814 1.97347 1.72320 0.89421 0.85907 0.84905 0.85461 0.83295 0.82390 0.83859 0.84892 0.84612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.07 10.96 21.82 0.24 -40.83 16 2 C 0.04 2.02 5.14 85.24 0.44 2.46 16 3 Si 0.98 37.74 29.59 68.60 2.03 39.77 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 5 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 7 C -0.49 -26.68 8.77 23.43 0.21 -26.47 16 8 H 0.07 4.05 7.73 -2.91 -0.02 4.03 16 9 C 0.06 3.14 5.58 -21.28 -0.12 3.02 16 10 C -0.13 -6.85 8.18 22.97 0.19 -6.66 16 11 C -0.04 -1.63 5.87 -20.13 -0.12 -1.75 16 12 C 0.13 5.33 6.87 40.19 0.28 5.60 16 13 C -0.21 -8.58 10.40 23.73 0.25 -8.33 16 14 C -0.13 -4.59 6.36 -20.21 -0.13 -4.72 16 15 C -0.09 -2.52 10.06 22.27 0.22 -2.29 16 16 C -0.15 -3.21 9.97 22.03 0.22 -2.99 16 17 C -0.10 -1.98 10.01 22.31 0.22 -1.76 16 18 C -0.14 -3.19 10.08 22.37 0.23 -2.96 16 19 C 0.08 2.61 7.27 39.04 0.28 2.89 16 20 N -0.58 -18.81 5.98 -176.96 -1.06 -19.87 16 21 H 0.42 10.96 7.92 -92.71 -0.73 10.23 16 22 C -0.20 -8.22 9.69 22.69 0.22 -8.00 16 23 C -0.11 -4.84 9.99 22.22 0.22 -4.61 16 24 C -0.06 -2.96 7.31 22.93 0.17 -2.79 16 25 F -0.17 -8.56 16.70 44.97 0.75 -7.81 16 26 H 0.29 13.41 8.30 -92.70 -0.77 12.64 16 27 H 0.12 6.49 4.99 -2.91 -0.01 6.48 16 28 H 0.13 5.57 7.16 -2.91 -0.02 5.55 16 29 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 31 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 32 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.13 4.22 7.04 -2.91 -0.02 4.20 16 34 H 0.14 4.87 8.06 -2.92 -0.02 4.85 16 Total: -1.00 -62.28 299.50 5.16 -57.13 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.42 Total: 30.97 kcal Atomic # 6 Polarization: -62.13 SS G_CDS: 2.77 Total: -59.36 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.82 Total: -60.70 kcal Atomic # 9 Polarization: -8.56 SS G_CDS: 0.75 Total: -7.81 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -62.28 5.16 -57.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243107335.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.617 kcal (2) G-P(sol) polarization free energy of solvation -62.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds