Wall clock time and date at job start Tue Mar 31 2020 05:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42896 * 109.46912 * 86.06843 * 3 2 1 5 5 C 1.35733 * 116.99885 * 179.97438 * 4 3 2 6 6 C 1.38593 * 120.14911 * 0.30740 * 5 4 3 7 7 C 1.38158 * 120.09287 * 180.27186 * 6 5 4 8 8 C 1.38550 * 120.39469 * 359.72177 * 7 6 5 9 9 C 1.37811 * 120.29746 * 359.97292 * 8 7 6 10 10 C 1.39744 * 119.89695 * 0.02918 * 9 8 7 11 11 C 1.47598 * 120.19088 * 180.02562 * 10 9 8 12 12 N 1.33046 * 120.55051 * 129.76355 * 11 10 9 13 13 C 1.31902 * 120.03093 * 179.97438 * 12 11 10 14 14 C 1.39021 * 121.22291 * 359.97438 * 13 12 11 15 15 N 1.31515 * 121.14482 * 359.97438 * 14 13 12 16 16 C 1.34089 * 119.86213 * 0.02562 * 15 14 13 17 17 C 1.40725 * 120.58192 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00140 * 171.77686 * 17 16 15 19 19 C 1.40156 * 120.00104 * 351.78316 * 17 16 15 20 20 N 1.30701 * 120.00120 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00258 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46760 * 89.99743 * 21 19 17 23 23 H 1.48490 * 109.47105 * 209.99820 * 21 19 17 24 24 H 1.48500 * 109.47036 * 330.00230 * 21 19 17 25 25 H 1.09002 * 109.47061 * 326.06945 * 3 2 1 26 26 H 1.08999 * 109.46564 * 206.07168 * 3 2 1 27 27 H 1.08002 * 119.95216 * 359.97438 * 6 5 4 28 28 H 1.08003 * 119.79932 * 179.74324 * 7 6 5 29 29 H 1.08004 * 119.85541 * 180.02562 * 8 7 6 30 30 H 1.08001 * 120.04880 * 180.02562 * 9 8 7 31 31 H 1.08007 * 119.38996 * 180.02562 * 13 12 11 32 32 H 1.08001 * 119.42817 * 180.28049 * 14 13 12 33 33 H 0.96999 * 119.99807 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 8 3.0844 -0.0915 -1.3441 5 6 4.4300 -0.1026 -1.5216 6 6 5.2771 -0.0329 -0.4269 7 6 6.6466 -0.0385 -0.6092 8 6 7.1837 -0.1195 -1.8838 9 6 6.3564 -0.1958 -2.9833 10 6 4.9694 -0.1910 -2.8131 11 6 4.0774 -0.2730 -3.9861 12 7 3.0889 -1.1628 -4.0231 13 6 2.2974 -1.2268 -5.0764 14 6 2.4726 -0.3765 -6.1622 15 7 3.4337 0.5211 -6.1751 16 6 4.2643 0.6250 -5.1276 17 6 5.2982 1.5797 -5.1256 18 1 5.8768 1.7473 -4.2292 19 6 5.5771 2.3131 -6.2870 20 7 4.8772 2.1100 -7.3720 21 14 6.9491 3.5809 -6.2842 22 1 8.2231 2.9324 -6.6865 23 1 6.6218 4.6664 -7.2431 24 1 7.0930 4.1515 -4.9208 25 1 2.9718 -0.8519 0.5736 26 1 2.9709 0.9239 0.4517 27 1 4.8660 0.0308 0.5698 28 1 7.3023 0.0201 0.2470 29 1 8.2556 -0.1237 -2.0162 30 1 6.7795 -0.2592 -3.9750 31 1 1.4980 -1.9528 -5.0953 32 1 1.8048 -0.4511 -7.0077 33 1 5.0705 2.6174 -8.1758 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243579614.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:28 Heat of formation + Delta-G solvation = 63.561941 kcal Electronic energy + Delta-G solvation = -20782.725142 eV Core-core repulsion = 17581.175578 eV Total energy + Delta-G solvation = -3201.549564 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.91497 -38.53500 -37.22805 -36.15091 -34.16095 -32.51473 -31.35870 -29.95255 -29.09095 -27.91707 -26.13505 -23.36951 -22.23442 -21.54751 -20.78699 -17.98994 -17.94715 -17.63695 -16.18321 -15.97856 -15.87051 -15.13081 -14.81016 -14.40130 -14.07887 -13.69504 -13.39190 -13.24385 -12.84627 -12.74924 -12.64240 -12.09531 -11.99414 -11.89653 -11.55801 -11.43954 -11.10097 -10.93905 -10.74604 -10.52574 -10.26015 -9.88975 -9.54923 -9.20247 -8.47021 -7.98542 -7.52946 -7.29219 -6.59763 -4.75269 1.65672 1.88509 2.26754 2.50202 2.68571 2.93856 2.95767 2.99933 3.22457 3.57758 3.74893 4.19030 4.26519 4.56960 4.88840 5.05488 5.18679 5.19903 5.45460 5.67038 5.69005 5.85378 5.99618 6.15161 6.24491 6.33985 6.50294 6.64860 6.78992 6.84397 6.92308 6.99958 7.13837 7.33184 7.41601 7.64851 7.77821 7.96230 8.30858 8.58893 9.25183 9.80408 9.99580 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.006735 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.420571 B = 4156.480760 C = 5251.330524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C 0.218 3.782 3 C 0.155 3.845 4 O -0.284 6.284 5 C 0.130 3.870 6 C -0.214 4.214 7 C -0.101 4.101 8 C -0.156 4.156 9 C -0.066 4.066 10 C 0.009 3.991 11 C -0.028 4.028 12 N -0.397 5.397 13 C -0.126 4.126 14 C 0.091 3.909 15 N -0.462 5.462 16 C 0.225 3.775 17 C -0.397 4.397 18 H 0.098 0.902 19 C 0.064 3.936 20 N -0.702 5.702 21 Si 0.911 3.089 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.256 1.256 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.123 0.877 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.383 -0.698 9.849 11.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.101 4.101 3 C 0.076 3.924 4 O -0.196 6.196 5 C 0.084 3.916 6 C -0.232 4.232 7 C -0.119 4.119 8 C -0.174 4.174 9 C -0.085 4.085 10 C 0.007 3.993 11 C -0.177 4.177 12 N -0.108 5.108 13 C -0.286 4.286 14 C -0.078 4.078 15 N -0.178 5.178 16 C 0.099 3.901 17 C -0.427 4.427 18 H 0.116 0.884 19 C -0.164 4.164 20 N -0.322 5.322 21 Si 0.734 3.266 22 H -0.189 1.189 23 H -0.198 1.198 24 H -0.180 1.180 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.141 0.859 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.153 0.847 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.468 -0.637 9.390 10.030 hybrid contribution 0.873 0.535 -0.016 1.024 sum 4.342 -0.102 9.373 10.331 Atomic orbital electron populations 1.81186 1.12553 1.08812 1.06041 1.28425 0.94362 0.93141 0.94194 1.19704 0.81999 1.04423 0.86232 1.86264 1.20326 1.88711 1.24311 1.19027 0.80747 0.98093 0.93707 1.20993 0.94509 1.10724 0.97023 1.20771 0.93969 1.00190 0.96997 1.20918 0.99472 1.04591 0.92413 1.21226 0.91338 0.96556 0.99429 1.17689 0.92060 1.00814 0.88714 1.21021 0.99475 1.00997 0.96197 1.67761 1.01197 1.17783 1.24107 1.22363 1.04807 1.07055 0.94377 1.23371 0.95479 0.92228 0.96760 1.69550 1.03976 1.19118 1.25199 1.20366 0.91798 0.91118 0.86776 1.19733 1.11506 1.13712 0.97766 0.88425 1.26240 0.97398 0.97641 0.95104 1.70056 1.30682 1.30665 1.00790 0.86244 0.80640 0.79854 0.79908 1.18894 1.19813 1.17964 0.87749 0.87826 0.85933 0.86521 0.86333 0.84677 0.85920 0.85608 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.81 18.54 42.15 0.78 -6.03 16 2 C 0.22 3.11 15.82 -20.76 -0.33 2.78 16 3 C 0.16 1.80 5.21 34.37 0.18 1.98 16 4 O -0.28 -5.05 9.15 -18.91 -0.17 -5.22 16 5 C 0.13 2.31 6.68 -38.70 -0.26 2.05 16 6 C -0.21 -2.90 9.03 -39.48 -0.36 -3.26 16 7 C -0.10 -1.32 10.03 -39.50 -0.40 -1.71 16 8 C -0.16 -2.28 10.02 -39.62 -0.40 -2.67 16 9 C -0.07 -1.21 7.75 -39.17 -0.30 -1.51 16 10 C 0.01 0.19 5.19 -104.76 -0.54 -0.35 16 11 C -0.03 -0.68 6.18 -80.22 -0.50 -1.17 16 12 N -0.40 -9.88 9.92 -7.86 -0.08 -9.95 16 13 C -0.13 -2.99 11.17 -17.23 -0.19 -3.18 16 14 C 0.09 2.21 11.17 -17.40 -0.19 2.01 16 15 N -0.46 -12.46 8.12 -9.56 -0.08 -12.54 16 16 C 0.23 5.94 6.67 -82.64 -0.55 5.39 16 17 C -0.40 -9.79 7.91 -37.92 -0.30 -10.09 16 18 H 0.10 2.23 5.81 -52.48 -0.31 1.93 16 19 C 0.06 1.51 5.50 -17.31 -0.10 1.41 16 20 N -0.70 -17.53 11.54 55.56 0.64 -16.89 16 21 Si 0.91 17.10 29.56 -169.99 -5.03 12.08 16 22 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 23 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 24 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 25 H 0.10 0.87 7.65 -51.93 -0.40 0.47 16 26 H 0.10 0.87 7.67 -51.93 -0.40 0.47 16 27 H 0.12 1.18 6.30 -52.49 -0.33 0.85 16 28 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 29 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 30 H 0.14 2.52 7.39 -52.49 -0.39 2.14 16 31 H 0.12 2.57 8.06 -52.48 -0.42 2.14 16 32 H 0.13 2.63 8.06 -52.49 -0.42 2.21 16 33 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 LS Contribution 301.82 15.07 4.55 4.55 Total: -1.00 -31.64 301.82 -6.26 -37.90 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -2.64 Total: 4.45 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -4.23 Total: -8.33 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 1.27 Total: -45.42 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.17 Total: -5.22 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.08 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.64 -6.26 -37.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243579614.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.458 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds