Wall clock time and date at job start Tue Mar 31 2020 05:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42896 * 109.46912 * 86.06843 * 3 2 1 5 5 C 1.35733 * 116.99885 * 179.97438 * 4 3 2 6 6 C 1.38593 * 120.14911 * 0.30740 * 5 4 3 7 7 C 1.38158 * 120.09287 * 180.27186 * 6 5 4 8 8 C 1.38550 * 120.39469 * 359.72177 * 7 6 5 9 9 C 1.37811 * 120.29746 * 359.97292 * 8 7 6 10 10 C 1.39744 * 119.89695 * 0.02918 * 9 8 7 11 11 C 1.47598 * 120.19088 * 180.02562 * 10 9 8 12 12 N 1.33046 * 120.55051 * 129.76355 * 11 10 9 13 13 C 1.31902 * 120.03093 * 179.97438 * 12 11 10 14 14 C 1.39021 * 121.22291 * 359.97438 * 13 12 11 15 15 N 1.31515 * 121.14482 * 359.97438 * 14 13 12 16 16 C 1.34089 * 119.86213 * 0.02562 * 15 14 13 17 17 C 1.40725 * 120.58192 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00140 * 171.77686 * 17 16 15 19 19 C 1.40156 * 120.00104 * 351.78316 * 17 16 15 20 20 N 1.30701 * 120.00120 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00258 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46760 * 89.99743 * 21 19 17 23 23 H 1.48490 * 109.47105 * 209.99820 * 21 19 17 24 24 H 1.48500 * 109.47036 * 330.00230 * 21 19 17 25 25 H 1.09002 * 109.47061 * 326.06945 * 3 2 1 26 26 H 1.08999 * 109.46564 * 206.07168 * 3 2 1 27 27 H 1.08002 * 119.95216 * 359.97438 * 6 5 4 28 28 H 1.08003 * 119.79932 * 179.74324 * 7 6 5 29 29 H 1.08004 * 119.85541 * 180.02562 * 8 7 6 30 30 H 1.08001 * 120.04880 * 180.02562 * 9 8 7 31 31 H 1.08007 * 119.38996 * 180.02562 * 13 12 11 32 32 H 1.08001 * 119.42817 * 180.28049 * 14 13 12 33 33 H 0.96999 * 119.99807 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 8 3.0844 -0.0915 -1.3441 5 6 4.4300 -0.1026 -1.5216 6 6 5.2771 -0.0329 -0.4269 7 6 6.6466 -0.0385 -0.6092 8 6 7.1837 -0.1195 -1.8838 9 6 6.3564 -0.1958 -2.9833 10 6 4.9694 -0.1910 -2.8131 11 6 4.0774 -0.2730 -3.9861 12 7 3.0889 -1.1628 -4.0231 13 6 2.2974 -1.2268 -5.0764 14 6 2.4726 -0.3765 -6.1622 15 7 3.4337 0.5211 -6.1751 16 6 4.2643 0.6250 -5.1276 17 6 5.2982 1.5797 -5.1256 18 1 5.8768 1.7473 -4.2292 19 6 5.5771 2.3131 -6.2870 20 7 4.8772 2.1100 -7.3720 21 14 6.9491 3.5809 -6.2842 22 1 8.2231 2.9324 -6.6865 23 1 6.6218 4.6664 -7.2431 24 1 7.0930 4.1515 -4.9208 25 1 2.9718 -0.8519 0.5736 26 1 2.9709 0.9239 0.4517 27 1 4.8660 0.0308 0.5698 28 1 7.3023 0.0201 0.2470 29 1 8.2556 -0.1237 -2.0162 30 1 6.7795 -0.2592 -3.9750 31 1 1.4980 -1.9528 -5.0953 32 1 1.8048 -0.4511 -7.0077 33 1 5.0705 2.6174 -8.1758 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243579614.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:28 Heat of formation + Delta-G solvation = 43.064713 kcal Electronic energy + Delta-G solvation = -20783.613969 eV Core-core repulsion = 17581.175578 eV Total energy + Delta-G solvation = -3202.438391 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.19761 -40.23314 -38.43176 -37.35153 -35.95852 -34.20115 -33.00111 -31.09442 -30.55080 -29.10047 -27.93149 -24.92322 -23.89085 -22.93267 -22.22180 -19.53272 -19.08674 -19.07280 -17.84698 -17.23157 -17.07776 -16.76567 -16.16512 -15.95475 -15.45465 -15.01985 -14.71971 -14.51208 -14.35048 -14.30076 -13.97526 -13.52309 -13.29328 -13.19597 -13.10779 -12.97410 -12.49884 -12.25689 -11.99890 -11.79353 -11.72879 -11.54728 -11.44168 -10.99917 -9.94663 -9.42880 -9.26213 -8.81682 -8.37142 -6.60299 0.26604 0.69831 0.82252 1.15025 1.29269 1.40785 1.55496 1.58149 1.60284 2.17883 2.54840 2.77058 3.04946 3.14186 3.79252 3.80105 4.09140 4.19014 4.22470 4.29800 4.31414 4.46232 4.55714 4.71146 4.75522 4.93676 4.96359 5.10953 5.18343 5.32738 5.55864 5.69449 5.78083 5.91899 6.08998 6.15502 6.32907 6.48312 6.63914 6.75701 7.40305 7.94640 8.26831 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.006735 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.420571 B = 4156.480760 C = 5251.330524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.237 3.763 3 C 0.149 3.851 4 O -0.327 6.327 5 C 0.124 3.876 6 C -0.200 4.200 7 C -0.081 4.081 8 C -0.155 4.155 9 C -0.080 4.080 10 C -0.048 4.048 11 C -0.020 4.020 12 N -0.418 5.418 13 C -0.141 4.141 14 C 0.072 3.928 15 N -0.500 5.500 16 C 0.187 3.813 17 C -0.412 4.412 18 H 0.109 0.891 19 C 0.019 3.981 20 N -0.745 5.745 21 Si 0.989 3.011 22 H -0.253 1.253 23 H -0.270 1.270 24 H -0.247 1.247 25 H 0.148 0.852 26 H 0.146 0.854 27 H 0.174 0.826 28 H 0.165 0.835 29 H 0.147 0.853 30 H 0.113 0.887 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.125 0.090 13.284 15.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.081 4.081 3 C 0.072 3.928 4 O -0.239 6.239 5 C 0.079 3.921 6 C -0.218 4.218 7 C -0.099 4.099 8 C -0.173 4.173 9 C -0.100 4.100 10 C -0.050 4.050 11 C -0.171 4.171 12 N -0.129 5.129 13 C -0.299 4.299 14 C -0.095 4.095 15 N -0.217 5.217 16 C 0.060 3.940 17 C -0.442 4.442 18 H 0.127 0.873 19 C -0.205 4.205 20 N -0.365 5.365 21 Si 0.807 3.193 22 H -0.177 1.177 23 H -0.194 1.194 24 H -0.170 1.170 25 H 0.165 0.835 26 H 0.163 0.837 27 H 0.191 0.809 28 H 0.183 0.817 29 H 0.165 0.835 30 H 0.131 0.869 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.167 0.110 12.826 14.232 hybrid contribution 0.062 0.222 -0.929 0.957 sum 6.229 0.332 11.897 13.433 Atomic orbital electron populations 1.81199 1.14394 1.10957 1.07638 1.29058 0.95043 0.91411 0.92614 1.20347 0.79865 1.08331 0.84296 1.86166 1.20773 1.88945 1.28050 1.19111 0.81280 0.98109 0.93644 1.21515 0.94324 1.08190 0.97804 1.21375 0.94433 0.96467 0.97585 1.21259 1.00516 1.03447 0.92093 1.21154 0.90972 0.97871 0.99963 1.17830 0.92582 1.05573 0.89001 1.21655 0.99122 0.99271 0.97049 1.67851 1.02103 1.18445 1.24546 1.22739 1.05445 1.07490 0.94265 1.23733 0.95658 0.92297 0.97836 1.69488 1.05212 1.20665 1.26376 1.20945 0.92744 0.92534 0.87733 1.20060 1.11472 1.13856 0.98801 0.87334 1.27260 0.99727 0.99361 0.94117 1.70158 1.32645 1.32012 1.01691 0.85091 0.77195 0.76754 0.80234 1.17741 1.19433 1.16983 0.83491 0.83672 0.80904 0.81720 0.83489 0.86932 0.83780 0.83437 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -15.43 18.54 20.01 0.37 -15.06 16 2 C 0.24 6.42 15.82 89.44 1.41 7.84 16 3 C 0.15 2.89 5.21 70.18 0.37 3.26 16 4 O -0.33 -11.08 9.15 -90.57 -0.83 -11.91 16 5 C 0.12 4.15 6.68 22.84 0.15 4.30 16 6 C -0.20 -4.34 9.03 22.34 0.20 -4.13 16 7 C -0.08 -1.61 10.03 22.33 0.22 -1.39 16 8 C -0.16 -3.98 10.02 22.24 0.22 -3.75 16 9 C -0.08 -2.89 7.75 22.53 0.17 -2.72 16 10 C -0.05 -1.99 5.19 -19.96 -0.10 -2.10 16 11 C -0.02 -1.03 6.18 43.57 0.27 -0.76 16 12 N -0.42 -21.66 9.92 -178.78 -1.77 -23.43 16 13 C -0.14 -7.03 11.17 84.87 0.95 -6.09 16 14 C 0.07 3.70 11.17 84.93 0.95 4.65 16 15 N -0.50 -28.56 8.12 -184.16 -1.50 -30.06 16 16 C 0.19 10.35 6.67 41.54 0.28 10.63 16 17 C -0.41 -21.03 7.91 23.34 0.18 -20.85 16 18 H 0.11 5.09 5.81 -2.91 -0.02 5.07 16 19 C 0.02 0.93 5.50 85.33 0.47 1.40 16 20 N -0.74 -38.67 11.54 21.86 0.25 -38.42 16 21 Si 0.99 34.98 29.56 68.60 2.03 37.01 16 22 H -0.25 -8.44 7.11 99.48 0.71 -7.74 16 23 H -0.27 -9.28 7.11 99.48 0.71 -8.58 16 24 H -0.25 -8.26 7.11 99.48 0.71 -7.56 16 25 H 0.15 1.64 7.65 -2.39 -0.02 1.62 16 26 H 0.15 1.65 7.67 -2.39 -0.02 1.63 16 27 H 0.17 1.94 6.30 -2.91 -0.02 1.92 16 28 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 29 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 30 H 0.11 4.39 7.39 -2.91 -0.02 4.37 16 31 H 0.14 6.26 8.06 -2.91 -0.02 6.23 16 32 H 0.15 6.53 8.06 -2.91 -0.02 6.51 16 33 H 0.29 13.32 8.29 -92.71 -0.77 12.55 16 Total: -1.00 -76.35 301.82 5.47 -70.88 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 1.16 Total: 20.71 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 5.75 Total: -9.71 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -2.65 Total: -106.97 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -0.83 Total: -11.91 kcal Atomic # 14 Polarization: 34.98 SS G_CDS: 2.03 Total: 37.01 kcal Total: -76.35 5.47 -70.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243579614.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.944 kcal (2) G-P(sol) polarization free energy of solvation -76.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds